National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15     1                              
C   9                                    
D   15     1                              
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                   1                
M   12               2                    
N   9                       2     1      
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                 2  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Turkey 11843 T 489 489
1 Turkey 11844 C 489 489
2 Turkey 11845 T 489 489
3 Turkey 11846 A 489 489
4 Turkey 11847 A 489 489
5 Turkey 11848 A 489 489
6 Turkey 11849 A 489 489
7 Turkey 11850 T 489 489
8 Turkey 11851 G T 489 487 Met3862Ile
9 Turkey 11852 T 489 489
10 Turkey 11853 C 489 489
11 Turkey 11854 A 489 489
12 Turkey 11855 G 489 489
13 Turkey 11856 A 489 489
14 Turkey 11857 T 489 489
15 Turkey 11858 G 489 489
16 Turkey 11859 T 489 489
17 Turkey 11860 A 489 489
18 Turkey 11861 A 489 489
19 Turkey 11862 A 489 489
20 Turkey 11863 G 489 489
21 Turkey 11864 T 489 489
22 Turkey 11865 G 489 489
23 Turkey 11866 C 489 489
24 Turkey 11867 A 489 489
25 Turkey 11868 C 489 489
26 Turkey 11869 A 489 489
27 Turkey 11870 T 489 489
28 Turkey 11871 C 489 489
29 Turkey 11872 A 489 489
30 Turkey 11873 G 489 489
31 Turkey 11874 T 489 489
32 Turkey 11875 A 489 489
33 Turkey 11876 G 489 489
34 Turkey 11877 T 489 489
35 Turkey 11878 C 489 489
36 Turkey 11879 T 489 489
37 Turkey 11880 T 489 489
38 Turkey 11881 A 489 489
39 Turkey 11882 C 489 489
40 Turkey 11883 T 489 489
41 Turkey 11884 C T 489 488 Leu3873Leu
42 Turkey 11885 T 489 489
43 Turkey 11886 C 489 489
44 Turkey 11887 A 489 489
45 Turkey 11888 G 489 489
46 Turkey 11889 T 489 489
47 Turkey 11890 T 489 489
48 Turkey 11891 T 489 489
49 Turkey 11892 T 489 489
50 Turkey 11893 G 489 489
51 Turkey 11894 C 489 489
52 Turkey 11895 A 489 489
53 Turkey 11896 A 489 489
54 Turkey 11897 C 489 489
55 Turkey 11898 A 489 489
56 Turkey 11899 A 489 488
57 Turkey 11900 C 489 488
58 Turkey 11901 T 489 488
59 Turkey 11902 C 489 488
60 Turkey 11903 A 489 488
61 Turkey 11904 G 489 488
62 Turkey 11905 A 489 488
63 Turkey 11906 G 489 488
64 Turkey 11907 T 489 488
65 Turkey 11908 A G 489 487 Val3881Val
66 Turkey 11909 G 489 488
67 Turkey 11910 A 489 488
68 Turkey 11911 A 489 488
69 Turkey 11912 T 489 488
70 Turkey 11913 C 489 488
71 Turkey 11914 A 489 488
72 Turkey 11915 T 489 488
73 Turkey 11916 C 489 488
74 Turkey 11917 A 489 488
75 Turkey 11918 T 489 488
76 Turkey 11919 C 489 488
77 Turkey 11920 T 489 488
78 Turkey 11921 A 489 488
79 Turkey 11922 A 489 488
80 Turkey 11923 A 489 488
81 Turkey 11924 T 489 488
82 Turkey 11925 T 489 488
83 Turkey 11926 G 489 488
84 Turkey 11927 T 489 488
85 Turkey 11928 G 489 488
86 Turkey 11929 G 489 489
87 Turkey 11930 G 489 489
88 Turkey 11931 C A 489 488 Ala3889Asp
89 Turkey 11932 T 489 489
90 Turkey 11933 C 489 489
91 Turkey 11934 A 489 489
92 Turkey 11935 A 489 489
93 Turkey 11936 T 489 489
94 Turkey 11937 G 489 489
95 Turkey 11938 T 489 489
96 Turkey 11939 G 489 489
97 Turkey 11940 T 489 489
98 Turkey 11941 C T 489 487 Val3892Val
99 Turkey 11942 C 489 489
100 Turkey 11943 A 489 489
101 Turkey 11944 G 489 489
102 Turkey 11945 T 489 489
103 Turkey 11946 T 489 489
104 Turkey 11947 A 489 489
105 Turkey 11948 C 489 489
106 Turkey 11949 A 489 489
107 Turkey 11950 C 489 489
108 Turkey 11951 A 489 489
109 Turkey 11952 A 489 489
110 Turkey 11953 T 489 489
111 Turkey 11954 G 489 489
112 Turkey 11955 A 489 489
113 Turkey 11956 C 489 489
114 Turkey 11957 A 489 489
115 Turkey 11958 T 489 489
116 Turkey 11959 T 489 489
117 Turkey 11960 C 489 489
118 Turkey 11961 T 489 489
119 Turkey 11962 C 489 489
120 Turkey 11963 T 489 489
121 Turkey 11964 T 489 489
122 Turkey 11965 A 489 489
123 Turkey 11966 G 489 489
124 Turkey 11967 C 489 489
125 Turkey 11968 T 489 489
126 Turkey 11969 A 489 489
127 Turkey 11970 A 489 489
128 Turkey 11971 A 489 489
129 Turkey 11972 G 489 489
130 Turkey 11973 A 489 489
131 Turkey 11974 T 489 489
132 Turkey 11975 A 489 489
133 Turkey 11976 C 489 489
134 Turkey 11977 T 489 489
135 Turkey 11978 A 489 489
136 Turkey 11979 C 489 489
137 Turkey 11980 T 489 489
138 Turkey 11981 G 489 489
139 Turkey 11982 A 489 489
140 Turkey 11983 A 489 489
141 Turkey 11984 G 489 489
142 Turkey 11985 C 489 489
143 Turkey 11986 C 489 489
144 Turkey 11987 T 489 489
145 Turkey 11988 T 489 489
146 Turkey 11989 T 489 489
147 Turkey 11990 G 489 489
148 Turkey 11991 A 489 487
149 Turkey 11992 A 489 489
150 Turkey 11993 A 490 490
151 Turkey 11994 A 490 490
152 Turkey 11995 A 490 490
153 Turkey 11996 A 490 489
154 Turkey 11997 T 490 490
155 Turkey 11998 G 490 490
156 Turkey 11999 G 490 490
157 Turkey 12000 T 490 489
158 Turkey 12001 T 490 490
159 Turkey 12002 T 489 489
160 Turkey 12003 C 489 489
161 Turkey 12004 A 489 489
162 Turkey 12005 C 489 489
163 Turkey 12006 T 489 489
164 Turkey 12007 A 489 489
165 Turkey 12008 C 489 489
166 Turkey 12009 T 489 489
167 Turkey 12010 T 489 489
168 Turkey 12011 T 489 489
169 Turkey 12012 C 489 489
170 Turkey 12013 T 489 489
171 Turkey 12014 G 489 489
172 Turkey 12015 T 489 489
173 Turkey 12016 T 489 489
174 Turkey 12017 T 489 489
175 Turkey 12018 T 489 489
176 Turkey 12019 G 489 489
177 Turkey 12020 C 489 489
178 Turkey 12021 T 489 489
179 Turkey 12022 T 489 489
180 Turkey 12023 T 489 489
181 Turkey 12024 C 489 489
182 Turkey 12025 C 489 489
183 Turkey 12026 A 489 489
184 Turkey 12027 T 489 488
185 Turkey 12028 G 489 488
186 Turkey 12029 C 489 488
187 Turkey 12030 A 489 488
188 Turkey 12031 G 489 488
189 Turkey 12032 G 489 488
190 Turkey 12033 G 489 488
191 Turkey 12034 T 489 488
192 Turkey 12035 G 489 488
193 Turkey 12036 C 489 488
194 Turkey 12037 T 489 488
195 Turkey 12038 G 489 488
196 Turkey 12039 T 489 488
197 Turkey 12040 A 489 488
198 Turkey 12041 G 489 488
199 Turkey 12042 A 489 489
200 Turkey 12043 C T 489 487 Asp3926Asp
201 Turkey 12044 A 489 489
202 Turkey 12045 T 489 489
203 Turkey 12046 A 489 489
204 Turkey 12047 A 489 489
205 Turkey 12048 A 489 489
206 Turkey 12049 C T 489 488 Asn3928Asn
207 Turkey 12050 A 489 489
208 Turkey 12051 A 489 489
209 Turkey 12052 G 489 489
210 Turkey 12053 C 489 489
211 Turkey 12054 T 489 489
212 Turkey 12055 T 489 489
213 Turkey 12056 T 489 489
214 Turkey 12057 G 489 489
215 Turkey 12058 T 489 489
216 Turkey 12059 G 489 489
217 Turkey 12060 A 489 489
218 Turkey 12061 A 489 489
219 Turkey 12062 G 489 489
220 Turkey 12063 A 489 489
221 Turkey 12064 A 489 489
222 Turkey 12065 A 489 489
223 Turkey 12066 T 489 489
224 Turkey 12067 G T 489 488 Met3934Ile
225 Turkey 12068 C 489 489
226 Turkey 12069 T 489 488
227 Turkey 12070 G 489 489
228 Turkey 12071 G 489 489
229 Turkey 12072 A 489 489
230 Turkey 12073 C 489 489
231 Turkey 12074 A 489 489
232 Turkey 12075 A G 489 483 Asn3937Ser
233 Turkey 12076 C T 489 488 Asn3937Asn
234 Turkey 12077 A 489 489
235 Turkey 12078 G 489 489
236 Turkey 12079 G 489 489
237 Turkey 12080 G 489 489
238 Turkey 12081 C 489 489
239 Turkey 12082 A 489 489
240 Turkey 12083 A 489 489
241 Turkey 12084 C 489 489
242 Turkey 12085 C 489 489
243 Turkey 12086 T 489 489
244 Turkey 12087 T 489 489
245 Turkey 12088 A 489 489
246 Turkey 12089 C 489 489
247 Turkey 12090 A 489 489
248 Turkey 12091 A 489 489