National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45         1         1                
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                   2                
T   12                                    
V   27         1                       1  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Taiwan 11843 T 150 150
1 Taiwan 11844 C 150 150
2 Taiwan 11845 T 150 150
3 Taiwan 11846 A 150 150
4 Taiwan 11847 A 150 150
5 Taiwan 11848 A 150 150
6 Taiwan 11849 A 150 150
7 Taiwan 11850 T 150 150
8 Taiwan 11851 G 150 150
9 Taiwan 11852 T 150 150
10 Taiwan 11853 C 150 150
11 Taiwan 11854 A 150 150
12 Taiwan 11855 G 150 150
13 Taiwan 11856 A 150 150
14 Taiwan 11857 T 150 150
15 Taiwan 11858 G 150 150
16 Taiwan 11859 T 150 150
17 Taiwan 11860 A 150 150
18 Taiwan 11861 A 150 150
19 Taiwan 11862 A 150 150
20 Taiwan 11863 G 150 150
21 Taiwan 11864 T 150 150
22 Taiwan 11865 G 150 150
23 Taiwan 11866 C 150 150
24 Taiwan 11867 A 150 150
25 Taiwan 11868 C 150 150
26 Taiwan 11869 A 150 150
27 Taiwan 11870 T 150 150
28 Taiwan 11871 C 150 150
29 Taiwan 11872 A 150 150
30 Taiwan 11873 G 150 150
31 Taiwan 11874 T 150 150
32 Taiwan 11875 A 150 150
33 Taiwan 11876 G 150 150
34 Taiwan 11877 T 150 150
35 Taiwan 11878 C 150 150
36 Taiwan 11879 T 150 150
37 Taiwan 11880 T 150 150
38 Taiwan 11881 A 150 150
39 Taiwan 11882 C 150 150
40 Taiwan 11883 T 150 150
41 Taiwan 11884 C 150 150
42 Taiwan 11885 T 150 150
43 Taiwan 11886 C 150 150
44 Taiwan 11887 A 150 150
45 Taiwan 11888 G 150 150
46 Taiwan 11889 T 150 150
47 Taiwan 11890 T 150 150
48 Taiwan 11891 T 150 150
49 Taiwan 11892 T 150 150
50 Taiwan 11893 G T 150 149 Leu3876Phe
51 Taiwan 11894 C 150 150
52 Taiwan 11895 A 150 150
53 Taiwan 11896 A 150 150
54 Taiwan 11897 C 150 150
55 Taiwan 11898 A 150 150
56 Taiwan 11899 A 150 150
57 Taiwan 11900 C 150 150
58 Taiwan 11901 T 150 150
59 Taiwan 11902 C 150 150
60 Taiwan 11903 A 150 150
61 Taiwan 11904 G 150 150
62 Taiwan 11905 A 150 150
63 Taiwan 11906 G 150 150
64 Taiwan 11907 T 150 150
65 Taiwan 11908 A 150 150
66 Taiwan 11909 G 150 150
67 Taiwan 11910 A 150 150
68 Taiwan 11911 A 150 150
69 Taiwan 11912 T 150 150
70 Taiwan 11913 C 150 150
71 Taiwan 11914 A 150 150
72 Taiwan 11915 T 150 150
73 Taiwan 11916 C T 150 148 Ser3884Leu
74 Taiwan 11917 A 150 150
75 Taiwan 11918 T 150 150
76 Taiwan 11919 C 150 150
77 Taiwan 11920 T 150 150
78 Taiwan 11921 A 150 150
79 Taiwan 11922 A 150 150
80 Taiwan 11923 A 150 150
81 Taiwan 11924 T 150 150
82 Taiwan 11925 T 150 150
83 Taiwan 11926 G 150 150
84 Taiwan 11927 T 150 150
85 Taiwan 11928 G 150 150
86 Taiwan 11929 G 150 150
87 Taiwan 11930 G 150 150
88 Taiwan 11931 C 150 150
89 Taiwan 11932 T 150 150
90 Taiwan 11933 C 150 150
91 Taiwan 11934 A 150 150
92 Taiwan 11935 A 150 150
93 Taiwan 11936 T 150 150
94 Taiwan 11937 G 150 150
95 Taiwan 11938 T 150 150
96 Taiwan 11939 G 150 150
97 Taiwan 11940 T 150 150
98 Taiwan 11941 C T 150 147 Val3892Val
99 Taiwan 11942 C 150 150
100 Taiwan 11943 A 150 149
101 Taiwan 11944 G 150 150
102 Taiwan 11945 T 150 150
103 Taiwan 11946 T 150 150
104 Taiwan 11947 A 150 150
105 Taiwan 11948 C 150 150
106 Taiwan 11949 A 150 150
107 Taiwan 11950 C 150 150
108 Taiwan 11951 A 150 150
109 Taiwan 11952 A 150 150
110 Taiwan 11953 T 150 150
111 Taiwan 11954 G 150 150
112 Taiwan 11955 A 150 150
113 Taiwan 11956 C 150 150
114 Taiwan 11957 A 150 150
115 Taiwan 11958 T 150 150
116 Taiwan 11959 T 150 150
117 Taiwan 11960 C 150 150
118 Taiwan 11961 T 150 150
119 Taiwan 11962 C 150 150
120 Taiwan 11963 T 150 150
121 Taiwan 11964 T 150 150
122 Taiwan 11965 A 150 150
123 Taiwan 11966 G 150 150
124 Taiwan 11967 C 150 150
125 Taiwan 11968 T 150 150
126 Taiwan 11969 A 150 150
127 Taiwan 11970 A 150 150
128 Taiwan 11971 A 150 150
129 Taiwan 11972 G 150 150
130 Taiwan 11973 A 150 150
131 Taiwan 11974 T 150 150
132 Taiwan 11975 A 150 150
133 Taiwan 11976 C 150 150
134 Taiwan 11977 T 150 150
135 Taiwan 11978 A 150 150
136 Taiwan 11979 C 150 150
137 Taiwan 11980 T 150 150
138 Taiwan 11981 G 150 150
139 Taiwan 11982 A 150 150
140 Taiwan 11983 A 150 150
141 Taiwan 11984 G 150 150
142 Taiwan 11985 C 150 150
143 Taiwan 11986 C 150 150
144 Taiwan 11987 T 150 150
145 Taiwan 11988 T 150 150
146 Taiwan 11989 T 150 150
147 Taiwan 11990 G 150 150
148 Taiwan 11991 A 150 150
149 Taiwan 11992 A 150 150
150 Taiwan 11993 A 150 150
151 Taiwan 11994 A 150 150
152 Taiwan 11995 A 150 150
153 Taiwan 11996 A 150 150
154 Taiwan 11997 T 150 150
155 Taiwan 11998 G 150 150
156 Taiwan 11999 G 150 150
157 Taiwan 12000 T 150 150
158 Taiwan 12001 T 150 150
159 Taiwan 12002 T 150 150
160 Taiwan 12003 C T 150 149 Ser3913Leu
161 Taiwan 12004 A 150 150
162 Taiwan 12005 C 150 150
163 Taiwan 12006 T 150 150
164 Taiwan 12007 A 150 150
165 Taiwan 12008 C 150 150
166 Taiwan 12009 T 150 150
167 Taiwan 12010 T 150 150
168 Taiwan 12011 T 150 150
169 Taiwan 12012 C 150 150
170 Taiwan 12013 T 150 150
171 Taiwan 12014 G T 150 149 Val3917Phe
172 Taiwan 12015 T 150 150
173 Taiwan 12016 T 150 150
174 Taiwan 12017 T 150 150
175 Taiwan 12018 T 150 150
176 Taiwan 12019 G 150 150
177 Taiwan 12020 C 150 150
178 Taiwan 12021 T 150 150
179 Taiwan 12022 T 150 150
180 Taiwan 12023 T 150 150
181 Taiwan 12024 C 150 150
182 Taiwan 12025 C 150 150
183 Taiwan 12026 A 150 150
184 Taiwan 12027 T 150 150
185 Taiwan 12028 G 150 150
186 Taiwan 12029 C 150 150
187 Taiwan 12030 A 150 150
188 Taiwan 12031 G 150 150
189 Taiwan 12032 G 150 150
190 Taiwan 12033 G 150 150
191 Taiwan 12034 T 150 150
192 Taiwan 12035 G 150 150
193 Taiwan 12036 C 150 150
194 Taiwan 12037 T 150 150
195 Taiwan 12038 G 150 150
196 Taiwan 12039 T 150 150
197 Taiwan 12040 A 150 150
198 Taiwan 12041 G 150 150
199 Taiwan 12042 A 150 150
200 Taiwan 12043 C 150 150
201 Taiwan 12044 A 150 150
202 Taiwan 12045 T 150 150
203 Taiwan 12046 A 150 150
204 Taiwan 12047 A 150 150
205 Taiwan 12048 A 150 150
206 Taiwan 12049 C 150 150
207 Taiwan 12050 A 150 150
208 Taiwan 12051 A 150 150
209 Taiwan 12052 G 150 150
210 Taiwan 12053 C 150 150
211 Taiwan 12054 T 150 150
212 Taiwan 12055 T 150 150
213 Taiwan 12056 T 150 150
214 Taiwan 12057 G 150 150
215 Taiwan 12058 T 150 150
216 Taiwan 12059 G 150 150
217 Taiwan 12060 A 150 150
218 Taiwan 12061 A 150 150
219 Taiwan 12062 G 150 150
220 Taiwan 12063 A 150 150
221 Taiwan 12064 A 150 150
222 Taiwan 12065 A 150 150
223 Taiwan 12066 T 150 150
224 Taiwan 12067 G 150 150
225 Taiwan 12068 C T 150 149 Leu3935Leu
226 Taiwan 12069 T 150 150
227 Taiwan 12070 G 150 150
228 Taiwan 12071 G 150 150
229 Taiwan 12072 A 150 150
230 Taiwan 12073 C 150 150
231 Taiwan 12074 A 150 150
232 Taiwan 12075 A 150 150
233 Taiwan 12076 C 150 150
234 Taiwan 12077 A 150 150
235 Taiwan 12078 G 150 150
236 Taiwan 12079 G 150 150
237 Taiwan 12080 G 150 150
238 Taiwan 12081 C 150 150
239 Taiwan 12082 A 150 150
240 Taiwan 12083 A 150 150
241 Taiwan 12084 C 150 150
242 Taiwan 12085 C 150 150
243 Taiwan 12086 T 150 150
244 Taiwan 12087 T 150 150
245 Taiwan 12088 A 150 150
246 Taiwan 12089 C 150 150
247 Taiwan 12090 A 150 150
248 Taiwan 12091 A 150 150