National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W Y
-   249                                      
?                                          
A   15 1                             2 1    
C   9                                      
D   15     4                 1             1
E   15       1   2                          
F   3         1                            
G   3                                      
H   3             1                        
I   6               2                      
K   18                       1              
L   45         3         9             1    
M   12               3               1      
N   9                       2     1        
Q   18                         1            
R   6                                      
S   30         1         2         1        
T   12 1             2               1      
V   27                                 1    
W   3                                      
Y                                          

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Switzerland 11843 T 7996 7996
1 Switzerland 11844 C 7996 7994
2 Switzerland 11845 T 7996 7996
3 Switzerland 11846 A 7996 7996
4 Switzerland 11847 A 7996 7996
5 Switzerland 11848 A 7996 7996
6 Switzerland 11849 A 7996 7995
7 Switzerland 11850 T C 7996 7995 Met3862Thr
8 Switzerland 11851 G T 7996 7892 Met3862Ile
9 Switzerland 11852 T 7996 7995
10 Switzerland 11853 C 7996 7993
11 Switzerland 11854 A 7996 7995
12 Switzerland 11855 G 7996 7996
13 Switzerland 11856 A 7996 7996
14 Switzerland 11857 T 7996 7996
15 Switzerland 11858 G 7996 7995
16 Switzerland 11859 T 7996 7996
17 Switzerland 11860 A 7996 7996
18 Switzerland 11861 A 7996 7995
19 Switzerland 11862 A 7996 7996
20 Switzerland 11863 G 8000 7998
21 Switzerland 11864 T 8072 8072
22 Switzerland 11865 G 8073 8072
23 Switzerland 11866 C 8073 8072
24 Switzerland 11867 A 8073 8072
25 Switzerland 11868 C 8075 8075
26 Switzerland 11869 A 8075 8075
27 Switzerland 11870 T 8075 8075
28 Switzerland 11871 C 8075 8075
29 Switzerland 11872 A 8075 8075
30 Switzerland 11873 G 8075 8075
31 Switzerland 11874 T 8075 8075
32 Switzerland 11875 A 8076 8076
33 Switzerland 11876 G 8076 8076
34 Switzerland 11877 T 8076 8076
35 Switzerland 11878 C 8076 8076
36 Switzerland 11879 T 8076 8076
37 Switzerland 11880 T 8076 8074
38 Switzerland 11881 A 8076 8076
39 Switzerland 11882 C 8076 8076
40 Switzerland 11883 T 8076 8076
41 Switzerland 11884 C 8076 8073
42 Switzerland 11885 T 8076 8076
43 Switzerland 11886 C T 8076 8075 Ser3874Leu
44 Switzerland 11887 A 8076 8076
45 Switzerland 11888 G 8076 8075
46 Switzerland 11889 T 8076 8076
47 Switzerland 11890 T 8076 8075
48 Switzerland 11891 T 8076 8076
49 Switzerland 11892 T 8076 8075
50 Switzerland 11893 G A 8076 8072 Leu3876Leu
51 Switzerland 11894 C 8076 8074
52 Switzerland 11895 A 8076 8075
53 Switzerland 11896 A 8076 8075
54 Switzerland 11897 C 8076 8076
55 Switzerland 11898 A 8076 8076
56 Switzerland 11899 A 8076 8076
57 Switzerland 11900 C 8076 8076
58 Switzerland 11901 T 8076 8076
59 Switzerland 11902 C 8076 8073
60 Switzerland 11903 A 8076 8076
61 Switzerland 11904 G 8076 8076
62 Switzerland 11905 A 8076 8075
63 Switzerland 11906 G 8076 8074
64 Switzerland 11907 T 8076 8076
65 Switzerland 11908 A 8076 8076
66 Switzerland 11909 G 8076 8074
67 Switzerland 11910 A 8076 8075
68 Switzerland 11911 A 8076 8076
69 Switzerland 11912 T 8076 8076
70 Switzerland 11913 C 8076 8074
71 Switzerland 11914 A 8076 8075
72 Switzerland 11915 T 8076 8076
73 Switzerland 11916 C T 8076 8067 Ser3884Leu
74 Switzerland 11917 A 8076 8076
75 Switzerland 11918 T 8076 8075
76 Switzerland 11919 C T 8076 8071 Ser3885Phe
77 Switzerland 11920 T 8076 8075
78 Switzerland 11921 A 8076 8076
79 Switzerland 11922 A 8076 8075
80 Switzerland 11923 A 8076 8076
81 Switzerland 11924 T 8076 8076
82 Switzerland 11925 T 8076 8075
83 Switzerland 11926 G T 8076 8075 Leu3887Phe
84 Switzerland 11927 T 8076 8075
85 Switzerland 11928 G 8076 8075
86 Switzerland 11929 G 8076 8075
87 Switzerland 11930 G A 8076 8073 Ala3889Thr
88 Switzerland 11931 C 8076 8076
89 Switzerland 11932 T 8076 8075
90 Switzerland 11933 C 8076 8076
91 Switzerland 11934 A 8076 8075
92 Switzerland 11935 A 8076 8075
93 Switzerland 11936 T 8076 8076
94 Switzerland 11937 G 8076 8075
95 Switzerland 11938 T 8076 8076
96 Switzerland 11939 G 8076 8076
97 Switzerland 11940 T 8076 8075
98 Switzerland 11941 C T 8076 8011 Val3892Val
99 Switzerland 11942 C 8076 8075
100 Switzerland 11943 A 8076 8073
101 Switzerland 11944 G 8076 8073
102 Switzerland 11945 T 8076 8075
103 Switzerland 11946 T 8076 8075
104 Switzerland 11947 A 8076 8071
105 Switzerland 11948 C 8076 8075
106 Switzerland 11949 A 8075 8071
107 Switzerland 11950 C T 8055 8050 His3895His
108 Switzerland 11951 A 8055 8051
109 Switzerland 11952 A 8055 8052
110 Switzerland 11953 T 8055 8052
111 Switzerland 11954 G 8055 8052
112 Switzerland 11955 A 8055 8050
113 Switzerland 11956 C T 8055 8047 Asp3897Asp
114 Switzerland 11957 A 8055 8053
115 Switzerland 11958 T 8055 8053
116 Switzerland 11959 T C 8055 8050 Ile3898Ile
117 Switzerland 11960 C 8055 8053
118 Switzerland 11961 T 8055 8053
119 Switzerland 11962 C T 8055 8037 Leu3899Leu
120 Switzerland 11963 T 8055 8052
121 Switzerland 11964 T 8055 8053
122 Switzerland 11965 A 8055 8052
123 Switzerland 11966 G A 8055 8051 Ala3901Thr
124 Switzerland 11967 C 8055 8052
125 Switzerland 11968 T 8055 8052
126 Switzerland 11969 A 8055 8053
127 Switzerland 11970 A 8055 8053
128 Switzerland 11971 A 8055 8052
129 Switzerland 11972 G A 8055 8052 Asp3903Asn
130 Switzerland 11973 A 8055 8052
131 Switzerland 11974 T C 8055 8003 Asp3903Asp
132 Switzerland 11975 A 8055 8052
133 Switzerland 11976 C T 8055 8038 Thr3904Ile
134 Switzerland 11977 T 8055 8053
135 Switzerland 11978 A G 8055 8052 Thr3905Ala
136 Switzerland 11979 C 8055 8052
137 Switzerland 11980 T 8055 8051
138 Switzerland 11981 G 8055 8052
139 Switzerland 11982 A G 8055 8051 Glu3906Gly
140 Switzerland 11983 A G 8055 8050 Glu3906Glu
141 Switzerland 11984 G 8055 8052
142 Switzerland 11985 C 8055 8053
143 Switzerland 11986 C 8055 8052
144 Switzerland 11987 T 8055 8052
145 Switzerland 11988 T 8055 8052
146 Switzerland 11989 T C 8055 8049 Phe3908Phe
147 Switzerland 11990 G 8055 8048
148 Switzerland 11991 A G 8055 8037 Glu3909Gly
149 Switzerland 11992 A 8055 8053
150 Switzerland 11993 A 8055 8053
151 Switzerland 11994 A 8055 8052
152 Switzerland 11995 A 8055 8053
153 Switzerland 11996 A 8055 8053
154 Switzerland 11997 T 8055 8052
155 Switzerland 11998 G 8055 8051
156 Switzerland 11999 G 8055 8050
157 Switzerland 12000 T 8055 8051
158 Switzerland 12001 T 8055 8054
159 Switzerland 12002 T 8055 8053
160 Switzerland 12003 C 8055 8054
161 Switzerland 12004 A 8055 8054
162 Switzerland 12005 C T 8055 8054 Leu3914Leu
163 Switzerland 12006 T 8055 8055
164 Switzerland 12007 A 8056 8056
165 Switzerland 12008 C G 8056 8052 Leu3915Val
166 Switzerland 12009 T 8056 8054
167 Switzerland 12010 T 8056 8056
168 Switzerland 12011 T 8056 8056
169 Switzerland 12012 C 8056 8054
170 Switzerland 12013 T 8056 8056
171 Switzerland 12014 G 8056 8053
172 Switzerland 12015 T 8056 8055
173 Switzerland 12016 T 8056 8054
174 Switzerland 12017 T 8056 8056
175 Switzerland 12018 T 8056 8053
176 Switzerland 12019 G T,A 8056 8051 Leu3918Phe-p.Leu3918Leu
177 Switzerland 12020 C 8056 8055
178 Switzerland 12021 T 8056 8054
179 Switzerland 12022 T 8056 8056
180 Switzerland 12023 T 8056 8055
181 Switzerland 12024 C 8056 8054
182 Switzerland 12025 C T 8056 8045 Ser3920Ser
183 Switzerland 12026 A 8056 8056
184 Switzerland 12027 T 8056 8056
185 Switzerland 12028 G T 8056 8054 Met3921Ile
186 Switzerland 12029 C 8056 8056
187 Switzerland 12030 A 8056 8053
188 Switzerland 12031 G A 8056 8046 Gln3922Gln
189 Switzerland 12032 G 8056 8056
190 Switzerland 12033 G 8056 8054
191 Switzerland 12034 T 8056 8054
192 Switzerland 12035 G 8056 8054
193 Switzerland 12036 C T 8056 8055 Ala3924Val
194 Switzerland 12037 T 8056 8056
195 Switzerland 12038 G 8056 8054
196 Switzerland 12039 T 8056 8055
197 Switzerland 12040 A 8056 8056
198 Switzerland 12041 G 8056 8055
199 Switzerland 12042 A 8056 8056
200 Switzerland 12043 C T 8056 7980 Asp3926Asp
201 Switzerland 12044 A 8056 8055
202 Switzerland 12045 T 8056 8056
203 Switzerland 12046 A T 8056 8052 Ile3927Ile
204 Switzerland 12047 A 8056 8056
205 Switzerland 12048 A 8056 8055
206 Switzerland 12049 C T 8056 8048 Asn3928Asn
207 Switzerland 12050 A 8056 8054
208 Switzerland 12051 A 8056 8056
209 Switzerland 12052 G T 8056 8051 Lys3929Asn
210 Switzerland 12053 C T 8056 8045 Leu3930Phe
211 Switzerland 12054 T 8056 8055
212 Switzerland 12055 T 8056 8055
213 Switzerland 12056 T 8056 8056
214 Switzerland 12057 G 8056 8055
215 Switzerland 12058 T 8056 8056
216 Switzerland 12059 G 8056 8055
217 Switzerland 12060 A 8056 8055
218 Switzerland 12061 A 8056 8053
219 Switzerland 12062 G 8056 8056
220 Switzerland 12063 A 8056 8056
221 Switzerland 12064 A 8056 8055
222 Switzerland 12065 A 8056 8055
223 Switzerland 12066 T 8056 8055
224 Switzerland 12067 G T 8056 8048 Met3934Ile
225 Switzerland 12068 C T 8056 8049 Leu3935Leu
226 Switzerland 12069 T 8056 8054
227 Switzerland 12070 G T,A 8056 8048 Leu3935Leu-p.Leu3935Leu
228 Switzerland 12071 G T 8056 8055 Asp3936Tyr
229 Switzerland 12072 A 8056 8056
230 Switzerland 12073 C T 8056 8052 Asp3936Asp
231 Switzerland 12074 A 8056 8056
232 Switzerland 12075 A G 8056 8051 Asn3937Ser
233 Switzerland 12076 C T 8056 8049 Asn3937Asn
234 Switzerland 12077 A 8056 8055
235 Switzerland 12078 G 8056 8055
236 Switzerland 12079 G 8056 8056
237 Switzerland 12080 G 8056 8054
238 Switzerland 12081 C 8056 8053
239 Switzerland 12082 A G 8056 8055 Ala3939Ala
240 Switzerland 12083 A 8056 8055
241 Switzerland 12084 C T 8056 8053 Thr3940Ile
242 Switzerland 12085 C T 8056 8037 Thr3940Thr
243 Switzerland 12086 T C 8056 8054 Leu3941Leu
244 Switzerland 12087 T 8056 8056
245 Switzerland 12088 A G 8056 8043 Leu3941Leu
246 Switzerland 12089 C 8056 8055
247 Switzerland 12090 A 8056 8055
248 Switzerland 12091 A 8056 8056