National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                 2  
C   9   2                                
D   15     3                              
E   15       1   1                        
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18       1                            
L   45         2         3                
M   12               2                    
N   9                       2            
Q   18                         1          
R   6                           1        
S   30                                    
T   12                                    
V   27           1                     1  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Sweden 11843 T 1388 1388
1 Sweden 11844 C 1388 1388
2 Sweden 11845 T 1388 1388
3 Sweden 11846 A G 1388 1387 Lys3861Glu
4 Sweden 11847 A 1388 1388
5 Sweden 11848 A 1388 1388
6 Sweden 11849 A 1388 1388
7 Sweden 11850 T 1388 1388
8 Sweden 11851 G 1388 1388
9 Sweden 11852 T 1388 1388
10 Sweden 11853 C 1388 1388
11 Sweden 11854 A 1388 1388
12 Sweden 11855 G 1388 1388
13 Sweden 11856 A 1388 1388
14 Sweden 11857 T 1388 1388
15 Sweden 11858 G 1388 1388
16 Sweden 11859 T 1388 1388
17 Sweden 11860 A 1388 1388
18 Sweden 11861 A 1388 1388
19 Sweden 11862 A 1388 1388
20 Sweden 11863 G 1388 1388
21 Sweden 11864 T 1388 1388
22 Sweden 11865 G 1388 1388
23 Sweden 11866 C T 1388 1387 Cys3867Cys
24 Sweden 11867 A 1388 1388
25 Sweden 11868 C 1388 1388
26 Sweden 11869 A 1388 1388
27 Sweden 11870 T 1388 1388
28 Sweden 11871 C 1388 1388
29 Sweden 11872 A 1388 1388
30 Sweden 11873 G 1388 1388
31 Sweden 11874 T 1388 1388
32 Sweden 11875 A 1388 1388
33 Sweden 11876 G 1388 1388
34 Sweden 11877 T 1388 1388
35 Sweden 11878 C 1388 1388
36 Sweden 11879 T 1388 1388
37 Sweden 11880 T 1388 1388
38 Sweden 11881 A 1388 1388
39 Sweden 11882 C 1388 1388
40 Sweden 11883 T 1388 1388
41 Sweden 11884 C 1388 1388
42 Sweden 11885 T 1388 1388
43 Sweden 11886 C 1388 1388
44 Sweden 11887 A 1388 1388
45 Sweden 11888 G 1388 1388
46 Sweden 11889 T 1388 1388
47 Sweden 11890 T 1388 1388
48 Sweden 11891 T 1388 1388
49 Sweden 11892 T 1388 1388
50 Sweden 11893 G 1388 1388
51 Sweden 11894 C 1388 1388
52 Sweden 11895 A 1388 1388
53 Sweden 11896 A 1388 1388
54 Sweden 11897 C 1388 1388
55 Sweden 11898 A 1388 1388
56 Sweden 11899 A 1388 1388
57 Sweden 11900 C 1388 1388
58 Sweden 11901 T 1388 1388
59 Sweden 11902 C 1388 1388
60 Sweden 11903 A 1388 1388
61 Sweden 11904 G 1388 1388
62 Sweden 11905 A 1388 1388
63 Sweden 11906 G 1388 1388
64 Sweden 11907 T 1388 1388
65 Sweden 11908 A 1388 1388
66 Sweden 11909 G 1388 1388
67 Sweden 11910 A 1388 1388
68 Sweden 11911 A 1388 1388
69 Sweden 11912 T 1388 1388
70 Sweden 11913 C 1388 1388
71 Sweden 11914 A 1388 1388
72 Sweden 11915 T 1388 1388
73 Sweden 11916 C 1388 1388
74 Sweden 11917 A 1388 1388
75 Sweden 11918 T 1388 1388
76 Sweden 11919 C 1388 1388
77 Sweden 11920 T 1388 1388
78 Sweden 11921 A 1388 1388
79 Sweden 11922 A 1388 1388
80 Sweden 11923 A 1388 1388
81 Sweden 11924 T 1388 1388
82 Sweden 11925 T 1388 1388
83 Sweden 11926 G 1388 1388
84 Sweden 11927 T 1388 1388
85 Sweden 11928 G 1388 1388
86 Sweden 11929 G 1388 1388
87 Sweden 11930 G 1388 1388
88 Sweden 11931 C 1388 1388
89 Sweden 11932 T 1388 1388
90 Sweden 11933 C 1388 1388
91 Sweden 11934 A 1388 1388
92 Sweden 11935 A 1388 1388
93 Sweden 11936 T 1388 1388
94 Sweden 11937 G 1388 1388
95 Sweden 11938 T C 1388 1387 Cys3891Cys
96 Sweden 11939 G 1388 1388
97 Sweden 11940 T 1388 1388
98 Sweden 11941 C T 1388 1385 Val3892Val
99 Sweden 11942 C 1388 1388
100 Sweden 11943 A 1388 1388
101 Sweden 11944 G 1388 1388
102 Sweden 11945 T 1388 1388
103 Sweden 11946 T 1388 1388
104 Sweden 11947 A 1388 1388
105 Sweden 11948 C 1388 1388
106 Sweden 11949 A 1388 1388
107 Sweden 11950 C 1388 1388
108 Sweden 11951 A 1388 1388
109 Sweden 11952 A 1388 1388
110 Sweden 11953 T 1388 1388
111 Sweden 11954 G 1388 1388
112 Sweden 11955 A 1388 1388
113 Sweden 11956 C T 1388 1385 Asp3897Asp
114 Sweden 11957 A 1388 1388
115 Sweden 11958 T 1388 1388
116 Sweden 11959 T 1388 1388
117 Sweden 11960 C 1388 1388
118 Sweden 11961 T 1388 1388
119 Sweden 11962 C T,A 1388 1386 Leu3899Leu-p.Leu3899Leu
120 Sweden 11963 T 1388 1388
121 Sweden 11964 T 1388 1388
122 Sweden 11965 A 1388 1388
123 Sweden 11966 G 1388 1388
124 Sweden 11967 C 1388 1388
125 Sweden 11968 T 1388 1388
126 Sweden 11969 A 1388 1388
127 Sweden 11970 A 1388 1388
128 Sweden 11971 A 1388 1388
129 Sweden 11972 G 1388 1388
130 Sweden 11973 A 1388 1388
131 Sweden 11974 T 1388 1388
132 Sweden 11975 A 1388 1388
133 Sweden 11976 C 1388 1388
134 Sweden 11977 T 1388 1388
135 Sweden 11978 A 1388 1388
136 Sweden 11979 C 1388 1388
137 Sweden 11980 T 1388 1388
138 Sweden 11981 G 1388 1388
139 Sweden 11982 A 1388 1388
140 Sweden 11983 A 1388 1388
141 Sweden 11984 G 1388 1388
142 Sweden 11985 C 1388 1388
143 Sweden 11986 C 1388 1388
144 Sweden 11987 T 1388 1388
145 Sweden 11988 T 1388 1388
146 Sweden 11989 T 1388 1388
147 Sweden 11990 G 1388 1388
148 Sweden 11991 A G 1388 1387 Glu3909Gly
149 Sweden 11992 A 1388 1388
150 Sweden 11993 A 1388 1388
151 Sweden 11994 A 1388 1388
152 Sweden 11995 A 1388 1388
153 Sweden 11996 A 1388 1388
154 Sweden 11997 T 1388 1388
155 Sweden 11998 G 1388 1388
156 Sweden 11999 G 1388 1388
157 Sweden 12000 T 1388 1388
158 Sweden 12001 T 1388 1388
159 Sweden 12002 T 1388 1388
160 Sweden 12003 C 1388 1388
161 Sweden 12004 A 1388 1388
162 Sweden 12005 C 1388 1388
163 Sweden 12006 T 1388 1388
164 Sweden 12007 A 1388 1388
165 Sweden 12008 C 1388 1388
166 Sweden 12009 T 1388 1388
167 Sweden 12010 T 1388 1388
168 Sweden 12011 T 1388 1388
169 Sweden 12012 C 1388 1388
170 Sweden 12013 T 1388 1388
171 Sweden 12014 G 1388 1388
172 Sweden 12015 T G 1388 1385 Val3917Gly
173 Sweden 12016 T 1388 1388
174 Sweden 12017 T 1388 1388
175 Sweden 12018 T 1388 1388
176 Sweden 12019 G 1388 1388
177 Sweden 12020 C T 1388 1386 Leu3919Phe
178 Sweden 12021 T 1388 1388
179 Sweden 12022 T 1388 1388
180 Sweden 12023 T 1388 1388
181 Sweden 12024 C 1388 1388
182 Sweden 12025 C 1388 1388
183 Sweden 12026 A 1388 1388
184 Sweden 12027 T 1388 1388
185 Sweden 12028 G T 1388 1387 Met3921Ile
186 Sweden 12029 C 1388 1388
187 Sweden 12030 A 1388 1388
188 Sweden 12031 G A 1388 1387 Gln3922Gln
189 Sweden 12032 G 1388 1388
190 Sweden 12033 G 1388 1388
191 Sweden 12034 T 1388 1388
192 Sweden 12035 G 1388 1388
193 Sweden 12036 C T 1388 1387 Ala3924Val
194 Sweden 12037 T 1388 1388
195 Sweden 12038 G 1388 1388
196 Sweden 12039 T 1388 1388
197 Sweden 12040 A 1388 1388
198 Sweden 12041 G 1388 1388
199 Sweden 12042 A 1388 1388
200 Sweden 12043 C T 1388 1378 Asp3926Asp
201 Sweden 12044 A 1388 1388
202 Sweden 12045 T 1388 1388
203 Sweden 12046 A 1388 1388
204 Sweden 12047 A 1388 1388
205 Sweden 12048 A 1388 1388
206 Sweden 12049 C T 1388 1386 Asn3928Asn
207 Sweden 12050 A 1388 1388
208 Sweden 12051 A 1388 1388
209 Sweden 12052 G 1388 1388
210 Sweden 12053 C T 1388 1387 Leu3930Phe
211 Sweden 12054 T 1388 1388
212 Sweden 12055 T 1388 1388
213 Sweden 12056 T 1388 1388
214 Sweden 12057 G 1388 1388
215 Sweden 12058 T 1388 1388
216 Sweden 12059 G 1388 1388
217 Sweden 12060 A 1388 1388
218 Sweden 12061 A G 1388 1387 Glu3932Glu
219 Sweden 12062 G 1388 1388
220 Sweden 12063 A 1388 1388
221 Sweden 12064 A 1388 1388
222 Sweden 12065 A 1388 1388
223 Sweden 12066 T 1388 1388
224 Sweden 12067 G T 1388 1386 Met3934Ile
225 Sweden 12068 C T 1388 1386 Leu3935Leu
226 Sweden 12069 T 1388 1388
227 Sweden 12070 G 1388 1388
228 Sweden 12071 G 1388 1388
229 Sweden 12072 A 1388 1388
230 Sweden 12073 C T 1388 1381 Asp3936Asp
231 Sweden 12074 A 1388 1388
232 Sweden 12075 A 1388 1388
233 Sweden 12076 C T 1388 1385 Asn3937Asn
234 Sweden 12077 A 1388 1388
235 Sweden 12078 G 1388 1388
236 Sweden 12079 G A 1388 1387 Arg3938Arg
237 Sweden 12080 G 1388 1388
238 Sweden 12081 C T 1388 1384 Ala3939Val
239 Sweden 12082 A 1388 1388
240 Sweden 12083 A 1388 1388
241 Sweden 12084 C 1388 1388
242 Sweden 12085 C 1388 1388
243 Sweden 12086 T 1388 1388
244 Sweden 12087 T 1388 1388
245 Sweden 12088 A 1388 1388
246 Sweden 12089 C 1388 1388
247 Sweden 12090 A 1388 1388
248 Sweden 12091 A 1388 1388