National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                 1  
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Sri_Lanka 11843 T 60 60
1 Sri_Lanka 11844 C 60 60
2 Sri_Lanka 11845 T 60 60
3 Sri_Lanka 11846 A 60 60
4 Sri_Lanka 11847 A 60 60
5 Sri_Lanka 11848 A 60 60
6 Sri_Lanka 11849 A 60 60
7 Sri_Lanka 11850 T 60 60
8 Sri_Lanka 11851 G 60 60
9 Sri_Lanka 11852 T 60 60
10 Sri_Lanka 11853 C 60 60
11 Sri_Lanka 11854 A 60 60
12 Sri_Lanka 11855 G 60 60
13 Sri_Lanka 11856 A 60 60
14 Sri_Lanka 11857 T 60 60
15 Sri_Lanka 11858 G 60 60
16 Sri_Lanka 11859 T 60 60
17 Sri_Lanka 11860 A 60 60
18 Sri_Lanka 11861 A 60 60
19 Sri_Lanka 11862 A 60 60
20 Sri_Lanka 11863 G 60 60
21 Sri_Lanka 11864 T 60 60
22 Sri_Lanka 11865 G 60 60
23 Sri_Lanka 11866 C 60 60
24 Sri_Lanka 11867 A 60 60
25 Sri_Lanka 11868 C 60 60
26 Sri_Lanka 11869 A 60 60
27 Sri_Lanka 11870 T 60 60
28 Sri_Lanka 11871 C 60 60
29 Sri_Lanka 11872 A 60 60
30 Sri_Lanka 11873 G 60 60
31 Sri_Lanka 11874 T 60 60
32 Sri_Lanka 11875 A 60 60
33 Sri_Lanka 11876 G 60 60
34 Sri_Lanka 11877 T 60 60
35 Sri_Lanka 11878 C 60 60
36 Sri_Lanka 11879 T 60 60
37 Sri_Lanka 11880 T 60 60
38 Sri_Lanka 11881 A 60 60
39 Sri_Lanka 11882 C 60 60
40 Sri_Lanka 11883 T 60 60
41 Sri_Lanka 11884 C 60 60
42 Sri_Lanka 11885 T 60 60
43 Sri_Lanka 11886 C 60 60
44 Sri_Lanka 11887 A 60 60
45 Sri_Lanka 11888 G 60 60
46 Sri_Lanka 11889 T 60 60
47 Sri_Lanka 11890 T 60 60
48 Sri_Lanka 11891 T 60 60
49 Sri_Lanka 11892 T 60 60
50 Sri_Lanka 11893 G 60 60
51 Sri_Lanka 11894 C 60 60
52 Sri_Lanka 11895 A 60 60
53 Sri_Lanka 11896 A 60 60
54 Sri_Lanka 11897 C 60 60
55 Sri_Lanka 11898 A 60 60
56 Sri_Lanka 11899 A 60 60
57 Sri_Lanka 11900 C 60 60
58 Sri_Lanka 11901 T 60 60
59 Sri_Lanka 11902 C 60 60
60 Sri_Lanka 11903 A 60 60
61 Sri_Lanka 11904 G 60 60
62 Sri_Lanka 11905 A 60 60
63 Sri_Lanka 11906 G 60 60
64 Sri_Lanka 11907 T 60 60
65 Sri_Lanka 11908 A 60 60
66 Sri_Lanka 11909 G 60 60
67 Sri_Lanka 11910 A 60 60
68 Sri_Lanka 11911 A 60 60
69 Sri_Lanka 11912 T 60 60
70 Sri_Lanka 11913 C 60 60
71 Sri_Lanka 11914 A 60 60
72 Sri_Lanka 11915 T 60 60
73 Sri_Lanka 11916 C 60 60
74 Sri_Lanka 11917 A 60 60
75 Sri_Lanka 11918 T 60 60
76 Sri_Lanka 11919 C 60 57
77 Sri_Lanka 11920 T 60 57
78 Sri_Lanka 11921 A 60 57
79 Sri_Lanka 11922 A 60 57
80 Sri_Lanka 11923 A 60 55
81 Sri_Lanka 11924 T 60 55
82 Sri_Lanka 11925 T 60 55
83 Sri_Lanka 11926 G 60 56
84 Sri_Lanka 11927 T 60 56
85 Sri_Lanka 11928 G 60 56
86 Sri_Lanka 11929 G 60 55
87 Sri_Lanka 11930 G 60 55
88 Sri_Lanka 11931 C 60 56
89 Sri_Lanka 11932 T 60 56
90 Sri_Lanka 11933 C 60 56
91 Sri_Lanka 11934 A 60 56
92 Sri_Lanka 11935 A 60 56
93 Sri_Lanka 11936 T 60 56
94 Sri_Lanka 11937 G 60 56
95 Sri_Lanka 11938 T 60 56
96 Sri_Lanka 11939 G 60 56
97 Sri_Lanka 11940 T 60 56
98 Sri_Lanka 11941 C 60 56
99 Sri_Lanka 11942 C 60 57
100 Sri_Lanka 11943 A 60 57
101 Sri_Lanka 11944 G 60 57
102 Sri_Lanka 11945 T 60 57
103 Sri_Lanka 11946 T 60 58
104 Sri_Lanka 11947 A 60 60
105 Sri_Lanka 11948 C 60 60
106 Sri_Lanka 11949 A 60 60
107 Sri_Lanka 11950 C 60 60
108 Sri_Lanka 11951 A 60 60
109 Sri_Lanka 11952 A 60 60
110 Sri_Lanka 11953 T 60 60
111 Sri_Lanka 11954 G 60 60
112 Sri_Lanka 11955 A 60 60
113 Sri_Lanka 11956 C 60 60
114 Sri_Lanka 11957 A 60 60
115 Sri_Lanka 11958 T 60 60
116 Sri_Lanka 11959 T 60 60
117 Sri_Lanka 11960 C 60 60
118 Sri_Lanka 11961 T 60 60
119 Sri_Lanka 11962 C 60 60
120 Sri_Lanka 11963 T 60 60
121 Sri_Lanka 11964 T 60 60
122 Sri_Lanka 11965 A 60 60
123 Sri_Lanka 11966 G 60 60
124 Sri_Lanka 11967 C 60 60
125 Sri_Lanka 11968 T 60 60
126 Sri_Lanka 11969 A 60 60
127 Sri_Lanka 11970 A 60 60
128 Sri_Lanka 11971 A 60 60
129 Sri_Lanka 11972 G 60 60
130 Sri_Lanka 11973 A 60 60
131 Sri_Lanka 11974 T 60 60
132 Sri_Lanka 11975 A 60 60
133 Sri_Lanka 11976 C 60 60
134 Sri_Lanka 11977 T 60 60
135 Sri_Lanka 11978 A 60 60
136 Sri_Lanka 11979 C 60 60
137 Sri_Lanka 11980 T 60 60
138 Sri_Lanka 11981 G 60 60
139 Sri_Lanka 11982 A 60 60
140 Sri_Lanka 11983 A 60 60
141 Sri_Lanka 11984 G 60 60
142 Sri_Lanka 11985 C 60 60
143 Sri_Lanka 11986 C 60 59
144 Sri_Lanka 11987 T 60 60
145 Sri_Lanka 11988 T 60 60
146 Sri_Lanka 11989 T 60 60
147 Sri_Lanka 11990 G 60 60
148 Sri_Lanka 11991 A 60 60
149 Sri_Lanka 11992 A 60 60
150 Sri_Lanka 11993 A 60 60
151 Sri_Lanka 11994 A 60 60
152 Sri_Lanka 11995 A 60 60
153 Sri_Lanka 11996 A 60 60
154 Sri_Lanka 11997 T 60 60
155 Sri_Lanka 11998 G 60 60
156 Sri_Lanka 11999 G 60 60
157 Sri_Lanka 12000 T 60 60
158 Sri_Lanka 12001 T 60 60
159 Sri_Lanka 12002 T 60 60
160 Sri_Lanka 12003 C 60 60
161 Sri_Lanka 12004 A 59 43
162 Sri_Lanka 12005 C 59 41
163 Sri_Lanka 12006 T 59 41
164 Sri_Lanka 12007 A 59 38
165 Sri_Lanka 12008 C 59 37
166 Sri_Lanka 12009 T 59 37
167 Sri_Lanka 12010 T 59 37
168 Sri_Lanka 12011 T 59 39
169 Sri_Lanka 12012 C 59 39
170 Sri_Lanka 12013 T 59 39
171 Sri_Lanka 12014 G 59 39
172 Sri_Lanka 12015 T 59 39
173 Sri_Lanka 12016 T 59 39
174 Sri_Lanka 12017 T 59 38
175 Sri_Lanka 12018 T 59 38
176 Sri_Lanka 12019 G 59 37
177 Sri_Lanka 12020 C 59 37
178 Sri_Lanka 12021 T 59 36
179 Sri_Lanka 12022 T 59 42
180 Sri_Lanka 12023 T 59 42
181 Sri_Lanka 12024 C 59 42
182 Sri_Lanka 12025 C 59 42
183 Sri_Lanka 12026 A 59 42
184 Sri_Lanka 12027 T 59 42
185 Sri_Lanka 12028 G 59 42
186 Sri_Lanka 12029 C 59 42
187 Sri_Lanka 12030 A 59 42
188 Sri_Lanka 12031 G 59 42
189 Sri_Lanka 12032 G 59 42
190 Sri_Lanka 12033 G 59 42
191 Sri_Lanka 12034 T 59 42
192 Sri_Lanka 12035 G 59 49
193 Sri_Lanka 12036 C 59 49
194 Sri_Lanka 12037 T 59 49
195 Sri_Lanka 12038 G 59 49
196 Sri_Lanka 12039 T 59 50
197 Sri_Lanka 12040 A 59 50
198 Sri_Lanka 12041 G 59 50
199 Sri_Lanka 12042 A 59 50
200 Sri_Lanka 12043 C 59 50
201 Sri_Lanka 12044 A 59 50
202 Sri_Lanka 12045 T 59 51
203 Sri_Lanka 12046 A 59 59
204 Sri_Lanka 12047 A 59 59
205 Sri_Lanka 12048 A 59 59
206 Sri_Lanka 12049 C 59 59
207 Sri_Lanka 12050 A 59 59
208 Sri_Lanka 12051 A 59 59
209 Sri_Lanka 12052 G 59 59
210 Sri_Lanka 12053 C 59 59
211 Sri_Lanka 12054 T 59 59
212 Sri_Lanka 12055 T 59 59
213 Sri_Lanka 12056 T 59 59
214 Sri_Lanka 12057 G 59 59
215 Sri_Lanka 12058 T 59 59
216 Sri_Lanka 12059 G 59 59
217 Sri_Lanka 12060 A 59 59
218 Sri_Lanka 12061 A 59 59
219 Sri_Lanka 12062 G 59 59
220 Sri_Lanka 12063 A 59 59
221 Sri_Lanka 12064 A 59 59
222 Sri_Lanka 12065 A 59 59
223 Sri_Lanka 12066 T 59 59
224 Sri_Lanka 12067 G 59 59
225 Sri_Lanka 12068 C 59 59
226 Sri_Lanka 12069 T 59 59
227 Sri_Lanka 12070 G 59 59
228 Sri_Lanka 12071 G 59 59
229 Sri_Lanka 12072 A 59 59
230 Sri_Lanka 12073 C 59 59
231 Sri_Lanka 12074 A 59 59
232 Sri_Lanka 12075 A 59 59
233 Sri_Lanka 12076 C 59 59
234 Sri_Lanka 12077 A 59 59
235 Sri_Lanka 12078 G 59 59
236 Sri_Lanka 12079 G 59 59
237 Sri_Lanka 12080 G 59 59
238 Sri_Lanka 12081 C T 59 58 Ala3939Val
239 Sri_Lanka 12082 A 59 59
240 Sri_Lanka 12083 A 59 59
241 Sri_Lanka 12084 C 59 59
242 Sri_Lanka 12085 C 59 59
243 Sri_Lanka 12086 T 59 59
244 Sri_Lanka 12087 T 59 59
245 Sri_Lanka 12088 A 59 59
246 Sri_Lanka 12089 C 59 59
247 Sri_Lanka 12090 A 59 59
248 Sri_Lanka 12091 A 59 59