National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9   1                                
D   15 1                                  
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                           1        
L   45         1         4                
M   12                                    
N   9                       2            
Q   18                   1                
R   6                                    
S   30                   1                
T   12               1                    
V   27                                 1  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 South_Korea 11843 T 1632 1632
1 South_Korea 11844 C 1632 1632
2 South_Korea 11845 T 1632 1632
3 South_Korea 11846 A 1632 1632
4 South_Korea 11847 A 1632 1632
5 South_Korea 11848 A 1632 1632
6 South_Korea 11849 A 1632 1632
7 South_Korea 11850 T 1632 1632
8 South_Korea 11851 G 1632 1632
9 South_Korea 11852 T 1632 1632
10 South_Korea 11853 C 1632 1632
11 South_Korea 11854 A 1632 1632
12 South_Korea 11855 G 1632 1632
13 South_Korea 11856 A 1632 1632
14 South_Korea 11857 T 1632 1632
15 South_Korea 11858 G 1632 1632
16 South_Korea 11859 T 1632 1632
17 South_Korea 11860 A 1632 1632
18 South_Korea 11861 A 1632 1632
19 South_Korea 11862 A 1632 1632
20 South_Korea 11863 G 1632 1632
21 South_Korea 11864 T 1632 1632
22 South_Korea 11865 G 1632 1632
23 South_Korea 11866 C T 1632 1631 Cys3867Cys
24 South_Korea 11867 A 1632 1632
25 South_Korea 11868 C 1632 1632
26 South_Korea 11869 A 1632 1632
27 South_Korea 11870 T 1632 1632
28 South_Korea 11871 C 1632 1632
29 South_Korea 11872 A 1632 1632
30 South_Korea 11873 G 1632 1632
31 South_Korea 11874 T 1632 1632
32 South_Korea 11875 A 1632 1632
33 South_Korea 11876 G 1632 1632
34 South_Korea 11877 T 1632 1632
35 South_Korea 11878 C 1632 1632
36 South_Korea 11879 T 1632 1632
37 South_Korea 11880 T 1632 1632
38 South_Korea 11881 A 1632 1632
39 South_Korea 11882 C 1632 1632
40 South_Korea 11883 T 1632 1632
41 South_Korea 11884 C 1632 1632
42 South_Korea 11885 T 1632 1632
43 South_Korea 11886 C 1632 1632
44 South_Korea 11887 A 1632 1632
45 South_Korea 11888 G 1632 1632
46 South_Korea 11889 T 1632 1632
47 South_Korea 11890 T 1632 1632
48 South_Korea 11891 T 1632 1632
49 South_Korea 11892 T 1632 1632
50 South_Korea 11893 G 1632 1632
51 South_Korea 11894 C 1632 1632
52 South_Korea 11895 A T 1632 1628 Gln3877Leu
53 South_Korea 11896 A 1632 1632
54 South_Korea 11897 C 1632 1632
55 South_Korea 11898 A 1632 1632
56 South_Korea 11899 A 1632 1632
57 South_Korea 11900 C 1632 1632
58 South_Korea 11901 T 1632 1632
59 South_Korea 11902 C T 1632 1631 Leu3879Leu
60 South_Korea 11903 A 1632 1632
61 South_Korea 11904 G 1632 1632
62 South_Korea 11905 A 1632 1632
63 South_Korea 11906 G 1632 1632
64 South_Korea 11907 T 1632 1632
65 South_Korea 11908 A 1632 1632
66 South_Korea 11909 G 1632 1632
67 South_Korea 11910 A 1632 1632
68 South_Korea 11911 A 1632 1632
69 South_Korea 11912 T 1632 1632
70 South_Korea 11913 C 1632 1632
71 South_Korea 11914 A 1632 1632
72 South_Korea 11915 T 1632 1632
73 South_Korea 11916 C T 1632 540 Ser3884Leu
74 South_Korea 11917 A 1632 1632
75 South_Korea 11918 T 1632 1632
76 South_Korea 11919 C 1632 1632
77 South_Korea 11920 T 1632 1632
78 South_Korea 11921 A 1632 1632
79 South_Korea 11922 A 1632 1632
80 South_Korea 11923 A 1632 1632
81 South_Korea 11924 T 1632 1632
82 South_Korea 11925 T 1632 1632
83 South_Korea 11926 G 1632 1632
84 South_Korea 11927 T 1632 1632
85 South_Korea 11928 G 1632 1632
86 South_Korea 11929 G 1632 1632
87 South_Korea 11930 G 1632 1632
88 South_Korea 11931 C 1632 1632
89 South_Korea 11932 T 1632 1632
90 South_Korea 11933 C 1632 1632
91 South_Korea 11934 A 1632 1632
92 South_Korea 11935 A 1632 1632
93 South_Korea 11936 T 1632 1632
94 South_Korea 11937 G 1632 1632
95 South_Korea 11938 T 1632 1632
96 South_Korea 11939 G 1632 1632
97 South_Korea 11940 T 1632 1632
98 South_Korea 11941 C T 1632 1631 Val3892Val
99 South_Korea 11942 C 1632 1632
100 South_Korea 11943 A 1632 1632
101 South_Korea 11944 G 1632 1632
102 South_Korea 11945 T 1632 1632
103 South_Korea 11946 T 1632 1632
104 South_Korea 11947 A 1632 1632
105 South_Korea 11948 C 1632 1632
106 South_Korea 11949 A 1632 1632
107 South_Korea 11950 C 1632 1632
108 South_Korea 11951 A 1632 1632
109 South_Korea 11952 A 1632 1632
110 South_Korea 11953 T 1632 1632
111 South_Korea 11954 G 1632 1632
112 South_Korea 11955 A 1632 1632
113 South_Korea 11956 C 1632 1632
114 South_Korea 11957 A 1632 1632
115 South_Korea 11958 T 1632 1632
116 South_Korea 11959 T 1632 1632
117 South_Korea 11960 C 1632 1632
118 South_Korea 11961 T 1632 1632
119 South_Korea 11962 C 1632 1632
120 South_Korea 11963 T 1632 1632
121 South_Korea 11964 T 1632 1632
122 South_Korea 11965 A 1632 1632
123 South_Korea 11966 G 1632 1632
124 South_Korea 11967 C 1632 1632
125 South_Korea 11968 T 1632 1632
126 South_Korea 11969 A 1632 1632
127 South_Korea 11970 A G 1632 1630 Lys3902Arg
128 South_Korea 11971 A 1632 1632
129 South_Korea 11972 G 1632 1632
130 South_Korea 11973 A 1632 1632
131 South_Korea 11974 T 1632 1632
132 South_Korea 11975 A 1632 1632
133 South_Korea 11976 C 1632 1632
134 South_Korea 11977 T 1632 1632
135 South_Korea 11978 A 1632 1632
136 South_Korea 11979 C 1632 1632
137 South_Korea 11980 T 1632 1632
138 South_Korea 11981 G 1632 1632
139 South_Korea 11982 A 1632 1632
140 South_Korea 11983 A 1632 1632
141 South_Korea 11984 G 1632 1632
142 South_Korea 11985 C 1632 1632
143 South_Korea 11986 C 1632 1632
144 South_Korea 11987 T 1632 1632
145 South_Korea 11988 T 1632 1632
146 South_Korea 11989 T 1632 1632
147 South_Korea 11990 G 1632 1632
148 South_Korea 11991 A 1632 1632
149 South_Korea 11992 A 1632 1632
150 South_Korea 11993 A 1632 1632
151 South_Korea 11994 A 1632 1632
152 South_Korea 11995 A 1632 1632
153 South_Korea 11996 A 1632 1632
154 South_Korea 11997 T 1632 1632
155 South_Korea 11998 G 1632 1632
156 South_Korea 11999 G 1632 1631
157 South_Korea 12000 T 1632 1632
158 South_Korea 12001 T 1632 1632
159 South_Korea 12002 T 1632 1632
160 South_Korea 12003 C 1632 1632
161 South_Korea 12004 A 1632 1632
162 South_Korea 12005 C T 1632 1631 Leu3914Leu
163 South_Korea 12006 T 1632 1632
164 South_Korea 12007 A 1632 1632
165 South_Korea 12008 C 1632 1632
166 South_Korea 12009 T 1632 1632
167 South_Korea 12010 T 1632 1632
168 South_Korea 12011 T 1632 1632
169 South_Korea 12012 C 1632 1632
170 South_Korea 12013 T 1632 1632
171 South_Korea 12014 G 1632 1632
172 South_Korea 12015 T 1632 1632
173 South_Korea 12016 T 1632 1632
174 South_Korea 12017 T 1632 1632
175 South_Korea 12018 T 1632 1632
176 South_Korea 12019 G 1632 1632
177 South_Korea 12020 C 1632 1632
178 South_Korea 12021 T 1632 1632
179 South_Korea 12022 T 1632 1632
180 South_Korea 12023 T 1632 1632
181 South_Korea 12024 C 1632 1632
182 South_Korea 12025 C 1632 1632
183 South_Korea 12026 A 1632 1632
184 South_Korea 12027 T 1632 1632
185 South_Korea 12028 G 1632 1632
186 South_Korea 12029 C 1632 1632
187 South_Korea 12030 A 1632 1632
188 South_Korea 12031 G 1632 1632
189 South_Korea 12032 G 1632 1632
190 South_Korea 12033 G 1632 1632
191 South_Korea 12034 T 1632 1632
192 South_Korea 12035 G 1632 1632
193 South_Korea 12036 C 1632 1632
194 South_Korea 12037 T 1632 1632
195 South_Korea 12038 G 1632 1632
196 South_Korea 12039 T 1632 1632
197 South_Korea 12040 A 1632 1632
198 South_Korea 12041 G 1632 1632
199 South_Korea 12042 A C 1632 1631 Asp3926Ala
200 South_Korea 12043 C 1632 1632
201 South_Korea 12044 A 1632 1632
202 South_Korea 12045 T 1632 1632
203 South_Korea 12046 A 1632 1632
204 South_Korea 12047 A 1632 1632
205 South_Korea 12048 A 1632 1632
206 South_Korea 12049 C T 1632 1629 Asn3928Asn
207 South_Korea 12050 A 1632 1632
208 South_Korea 12051 A 1632 1631
209 South_Korea 12052 G 1632 1632
210 South_Korea 12053 C T 1632 1629 Leu3930Phe
211 South_Korea 12054 T 1632 1632
212 South_Korea 12055 T 1632 1631
213 South_Korea 12056 T 1632 1632
214 South_Korea 12057 G 1632 1632
215 South_Korea 12058 T 1632 1632
216 South_Korea 12059 G 1632 1631
217 South_Korea 12060 A 1632 1632
218 South_Korea 12061 A 1632 1632
219 South_Korea 12062 G 1632 1632
220 South_Korea 12063 A 1632 1632
221 South_Korea 12064 A 1632 1632
222 South_Korea 12065 A 1632 1632
223 South_Korea 12066 T 1632 1632
224 South_Korea 12067 G 1632 1632
225 South_Korea 12068 C T 1632 1631 Leu3935Leu
226 South_Korea 12069 T 1632 1632
227 South_Korea 12070 G T 1632 1630 Leu3935Leu
228 South_Korea 12071 G 1632 1632
229 South_Korea 12072 A 1632 1632
230 South_Korea 12073 C 1632 1632
231 South_Korea 12074 A 1632 1632
232 South_Korea 12075 A 1632 1632
233 South_Korea 12076 C T 1632 1628 Asn3937Asn
234 South_Korea 12077 A 1632 1632
235 South_Korea 12078 G 1632 1632
236 South_Korea 12079 G 1632 1632
237 South_Korea 12080 G 1632 1632
238 South_Korea 12081 C 1632 1632
239 South_Korea 12082 A 1632 1632
240 South_Korea 12083 A 1632 1632
241 South_Korea 12084 C T 1632 1627 Thr3940Ile
242 South_Korea 12085 C 1632 1632
243 South_Korea 12086 T 1632 1632
244 South_Korea 12087 T 1632 1632
245 South_Korea 12088 A 1632 1632
246 South_Korea 12089 C 1632 1632
247 South_Korea 12090 A 1632 1632
248 South_Korea 12091 A 1632 1632