National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                             1   1  
C   9                                    
D   15     2                 1            
E   15           1                        
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                       1   1        
L   45         4         4                
M   12               1                    
N   9               1       2            
Q   18                   1     2          
R   6                                    
S   30         1         2         3      
T   12               2               2    
V   27 1       1     1                 3  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 South_Africa 11843 T 3056 3056
1 South_Africa 11844 C 3056 3056
2 South_Africa 11845 T 3056 3056
3 South_Africa 11846 A 3056 3056
4 South_Africa 11847 A 3057 3057
5 South_Africa 11848 A 3057 3057
6 South_Africa 11849 A 3057 3057
7 South_Africa 11850 T 3057 3057
8 South_Africa 11851 G 3057 3057
9 South_Africa 11852 T 3057 3057
10 South_Africa 11853 C 3057 3057
11 South_Africa 11854 A G 3057 3054 Ser3863Ser
12 South_Africa 11855 G 3057 3057
13 South_Africa 11856 A 3057 3056
14 South_Africa 11857 T 3057 3056
15 South_Africa 11858 G A 3057 3055 Val3865Ile
16 South_Africa 11859 T 3057 3056
17 South_Africa 11860 A 3057 3056
18 South_Africa 11861 A 3057 3056
19 South_Africa 11862 A G 3057 3055 Lys3866Arg
20 South_Africa 11863 G 3057 3056
21 South_Africa 11864 T 3057 3056
22 South_Africa 11865 G 3057 3056
23 South_Africa 11866 C 3057 3056
24 South_Africa 11867 A 3058 3058
25 South_Africa 11868 C 3060 3060
26 South_Africa 11869 A 3060 3060
27 South_Africa 11870 T 3065 3065
28 South_Africa 11871 C 3065 3065
29 South_Africa 11872 A 3065 3065
30 South_Africa 11873 G 3065 3065
31 South_Africa 11874 T 3065 3065
32 South_Africa 11875 A G 3065 3063 Val3870Val
33 South_Africa 11876 G 3065 3065
34 South_Africa 11877 T 3065 3065
35 South_Africa 11878 C 3065 3065
36 South_Africa 11879 T 3065 3065
37 South_Africa 11880 T 3065 3065
38 South_Africa 11881 A 3065 3065
39 South_Africa 11882 C 3065 3065
40 South_Africa 11883 T 3065 3065
41 South_Africa 11884 C 3065 3065
42 South_Africa 11885 T 3065 3065
43 South_Africa 11886 C T 3065 3064 Ser3874Leu
44 South_Africa 11887 A 3065 3065
45 South_Africa 11888 G 3065 3065
46 South_Africa 11889 T 3065 3065
47 South_Africa 11890 T 3065 3065
48 South_Africa 11891 T 3065 3065
49 South_Africa 11892 T 3065 3065
50 South_Africa 11893 G T 3065 3064 Leu3876Phe
51 South_Africa 11894 C 3065 3065
52 South_Africa 11895 A 3065 3065
53 South_Africa 11896 A G 3065 3064 Gln3877Gln
54 South_Africa 11897 C 3065 3065
55 South_Africa 11898 A 3065 3065
56 South_Africa 11899 A 3065 3065
57 South_Africa 11900 C 3065 3065
58 South_Africa 11901 T 3065 3065
59 South_Africa 11902 C 3065 3065
60 South_Africa 11903 A 3065 3065
61 South_Africa 11904 G 3065 3065
62 South_Africa 11905 A 3065 3065
63 South_Africa 11906 G 3065 3065
64 South_Africa 11907 T 3065 3065
65 South_Africa 11908 A 3065 3065
66 South_Africa 11909 G 3065 3065
67 South_Africa 11910 A 3065 3065
68 South_Africa 11911 A 3065 3065
69 South_Africa 11912 T 3065 3065
70 South_Africa 11913 C 3065 3065
71 South_Africa 11914 A 3065 3065
72 South_Africa 11915 T 3065 3065
73 South_Africa 11916 C T 3065 3061 Ser3884Leu
74 South_Africa 11917 A 3065 3065
75 South_Africa 11918 T 3065 3065
76 South_Africa 11919 C T 3065 3062 Ser3885Phe
77 South_Africa 11920 T C 3065 3064 Ser3885Ser
78 South_Africa 11921 A 3065 3065
79 South_Africa 11922 A 3065 3065
80 South_Africa 11923 A 3065 3065
81 South_Africa 11924 T C 3065 3064 Leu3887Leu
82 South_Africa 11925 T 3065 3065
83 South_Africa 11926 G 3065 3065
84 South_Africa 11927 T 3065 3065
85 South_Africa 11928 G 3065 3065
86 South_Africa 11929 G 3065 3065
87 South_Africa 11930 G 3065 3065
88 South_Africa 11931 C 3065 3065
89 South_Africa 11932 T 3065 3065
90 South_Africa 11933 C 3065 3065
91 South_Africa 11934 A 3065 3065
92 South_Africa 11935 A 3065 3065
93 South_Africa 11936 T 3065 3065
94 South_Africa 11937 G 3065 3065
95 South_Africa 11938 T 3065 3065
96 South_Africa 11939 G 3065 3065
97 South_Africa 11940 T C 3065 3064 Val3892Ala
98 South_Africa 11941 C T 3065 3063 Val3892Val
99 South_Africa 11942 C 3065 3065
100 South_Africa 11943 A T 3064 3062 Gln3893Leu
101 South_Africa 11944 G A 3064 3062 Gln3893Gln
102 South_Africa 11945 T 3063 3060
103 South_Africa 11946 T 3063 3060
104 South_Africa 11947 A 3063 3060
105 South_Africa 11948 C 3063 3061
106 South_Africa 11949 A 3063 3061
107 South_Africa 11950 C 3062 3059
108 South_Africa 11951 A 3062 3059
109 South_Africa 11952 A T 3061 3057 Asn3896Ile
110 South_Africa 11953 T C 3061 3055 Asn3896Asn
111 South_Africa 11954 G 3061 3058
112 South_Africa 11955 A 3061 3058
113 South_Africa 11956 C T 3061 3051 Asp3897Asp
114 South_Africa 11957 A 3061 3059
115 South_Africa 11958 T 3061 3059
116 South_Africa 11959 T 3061 3060
117 South_Africa 11960 C 3061 3060
118 South_Africa 11961 T 3061 3060
119 South_Africa 11962 C T 3061 3056 Leu3899Leu
120 South_Africa 11963 T 3061 3060
121 South_Africa 11964 T 3061 3060
122 South_Africa 11965 A C 3061 3059 Leu3900Phe
123 South_Africa 11966 G 3061 3060
124 South_Africa 11967 C 3061 3060
125 South_Africa 11968 T 3061 3060
126 South_Africa 11969 A 3061 3060
127 South_Africa 11970 A 3061 3061
128 South_Africa 11971 A 3061 3061
129 South_Africa 11972 G 3061 3061
130 South_Africa 11973 A 3061 3061
131 South_Africa 11974 T 3061 3061
132 South_Africa 11975 A 3061 3061
133 South_Africa 11976 C T 3061 3059 Thr3904Ile
134 South_Africa 11977 T 3061 3061
135 South_Africa 11978 A 3061 3061
136 South_Africa 11979 C 3061 3061
137 South_Africa 11980 T 3061 3061
138 South_Africa 11981 G 3061 3061
139 South_Africa 11982 A 3061 3061
140 South_Africa 11983 A 3061 3061
141 South_Africa 11984 G T 3061 3060 Ala3907Ser
142 South_Africa 11985 C 3061 3061
143 South_Africa 11986 C 3061 3061
144 South_Africa 11987 T 3061 3061
145 South_Africa 11988 T 3061 3061
146 South_Africa 11989 T 3061 3061
147 South_Africa 11990 G 3061 3061
148 South_Africa 11991 A G 3061 3059 Glu3909Gly
149 South_Africa 11992 A 3061 3061
150 South_Africa 11993 A 3061 3060
151 South_Africa 11994 A 3061 3060
152 South_Africa 11995 A 3061 3061
153 South_Africa 11996 A 3061 3061
154 South_Africa 11997 T 3061 3061
155 South_Africa 11998 G 3061 3061
156 South_Africa 11999 G 3061 3061
157 South_Africa 12000 T 3061 3061
158 South_Africa 12001 T 3061 3061
159 South_Africa 12002 T 3061 3061
160 South_Africa 12003 C 3061 3061
161 South_Africa 12004 A 3061 3061
162 South_Africa 12005 C T 3061 3056 Leu3914Leu
163 South_Africa 12006 T 3061 3061
164 South_Africa 12007 A 3061 3061
165 South_Africa 12008 C T 3061 3060 Leu3915Phe
166 South_Africa 12009 T 3061 3061
167 South_Africa 12010 T 3061 3061
168 South_Africa 12011 T 3061 3061
169 South_Africa 12012 C 3061 3061
170 South_Africa 12013 T 3061 3061
171 South_Africa 12014 G T 3061 3060 Val3917Phe
172 South_Africa 12015 T 3061 3061
173 South_Africa 12016 T A 3061 3060 Val3917Val
174 South_Africa 12017 T 3061 3061
175 South_Africa 12018 T 3061 3061
176 South_Africa 12019 G 3061 3061
177 South_Africa 12020 C T 3061 3060 Leu3919Phe
178 South_Africa 12021 T 3061 3061
179 South_Africa 12022 T 3061 3061
180 South_Africa 12023 T 3061 3061
181 South_Africa 12024 C 3061 3061
182 South_Africa 12025 C T 3061 3060 Ser3920Ser
183 South_Africa 12026 A 3061 3061
184 South_Africa 12027 T 3061 3061
185 South_Africa 12028 G 3061 3061
186 South_Africa 12029 C 3061 3061
187 South_Africa 12030 A 3061 3061
188 South_Africa 12031 G 3061 3061
189 South_Africa 12032 G 3061 3061
190 South_Africa 12033 G 3061 3061
191 South_Africa 12034 T 3061 3061
192 South_Africa 12035 G 3061 3061
193 South_Africa 12036 C 3061 3061
194 South_Africa 12037 T 3061 3061
195 South_Africa 12038 G 3061 3061
196 South_Africa 12039 T 3061 3061
197 South_Africa 12040 A 3060 3060
198 South_Africa 12041 G 3060 3060
199 South_Africa 12042 A 3060 3060
200 South_Africa 12043 C 3060 3060
201 South_Africa 12044 A 3060 3060
202 South_Africa 12045 T 3060 3060
203 South_Africa 12046 A 3060 3060
204 South_Africa 12047 A 3060 3060
205 South_Africa 12048 A 3060 3060
206 South_Africa 12049 C T 3060 3058 Asn3928Asn
207 South_Africa 12050 A 3060 3060
208 South_Africa 12051 A 3060 3060
209 South_Africa 12052 G T 3060 3059 Lys3929Asn
210 South_Africa 12053 C 3060 3060
211 South_Africa 12054 T 3060 3060
212 South_Africa 12055 T 3060 3060
213 South_Africa 12056 T 3060 3060
214 South_Africa 12057 G 3060 3060
215 South_Africa 12058 T 3060 3060
216 South_Africa 12059 G 3060 3060
217 South_Africa 12060 A 3060 3060
218 South_Africa 12061 A 3060 3060
219 South_Africa 12062 G 3060 3060
220 South_Africa 12063 A 3060 3060
221 South_Africa 12064 A 3060 3060
222 South_Africa 12065 A 3060 3060
223 South_Africa 12066 T 3060 3060
224 South_Africa 12067 G T 3060 3057 Met3934Ile
225 South_Africa 12068 C T 3060 3056 Leu3935Leu
226 South_Africa 12069 T 3060 3060
227 South_Africa 12070 G 3060 3060
228 South_Africa 12071 G A 3060 3058 Asp3936Asn
229 South_Africa 12072 A 3060 3060
230 South_Africa 12073 C T 3060 3059 Asp3936Asp
231 South_Africa 12074 A 3060 3060
232 South_Africa 12075 A 3060 3060
233 South_Africa 12076 C 3060 3060
234 South_Africa 12077 A 3060 3060
235 South_Africa 12078 G 3060 3060
236 South_Africa 12079 G 3060 3060
237 South_Africa 12080 G 3060 3060
238 South_Africa 12081 C T 3060 3055 Ala3939Val
239 South_Africa 12082 A 3060 3060
240 South_Africa 12083 A 3060 3060
241 South_Africa 12084 C T 3060 3059 Thr3940Ile
242 South_Africa 12085 C T,A 3060 3056 Thr3940Thr-p.Thr3940Thr
243 South_Africa 12086 T 3060 3060
244 South_Africa 12087 T 3060 3060
245 South_Africa 12088 A 3060 3060
246 South_Africa 12089 C 3060 3060
247 South_Africa 12090 A 3060 3060
248 South_Africa 12091 A 3060 3060