National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45         1                          
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Slovakia 11843 T 96 96
1 Slovakia 11844 C 96 96
2 Slovakia 11845 T 96 96
3 Slovakia 11846 A 96 96
4 Slovakia 11847 A 96 96
5 Slovakia 11848 A 96 96
6 Slovakia 11849 A 96 96
7 Slovakia 11850 T 96 96
8 Slovakia 11851 G 96 96
9 Slovakia 11852 T 96 96
10 Slovakia 11853 C 96 96
11 Slovakia 11854 A 96 96
12 Slovakia 11855 G 96 96
13 Slovakia 11856 A 96 96
14 Slovakia 11857 T 96 96
15 Slovakia 11858 G 96 96
16 Slovakia 11859 T 96 96
17 Slovakia 11860 A 96 96
18 Slovakia 11861 A 96 96
19 Slovakia 11862 A 96 96
20 Slovakia 11863 G 96 96
21 Slovakia 11864 T 96 96
22 Slovakia 11865 G 96 96
23 Slovakia 11866 C 96 96
24 Slovakia 11867 A 96 96
25 Slovakia 11868 C 96 96
26 Slovakia 11869 A 96 96
27 Slovakia 11870 T 96 96
28 Slovakia 11871 C 96 96
29 Slovakia 11872 A 96 96
30 Slovakia 11873 G 96 96
31 Slovakia 11874 T 96 96
32 Slovakia 11875 A 96 96
33 Slovakia 11876 G 96 96
34 Slovakia 11877 T 96 96
35 Slovakia 11878 C 96 96
36 Slovakia 11879 T 96 96
37 Slovakia 11880 T 96 96
38 Slovakia 11881 A 96 96
39 Slovakia 11882 C 96 96
40 Slovakia 11883 T 96 96
41 Slovakia 11884 C 96 96
42 Slovakia 11885 T 96 96
43 Slovakia 11886 C 96 96
44 Slovakia 11887 A 96 96
45 Slovakia 11888 G 96 96
46 Slovakia 11889 T 96 96
47 Slovakia 11890 T 96 96
48 Slovakia 11891 T 96 96
49 Slovakia 11892 T 96 96
50 Slovakia 11893 G 96 96
51 Slovakia 11894 C 96 96
52 Slovakia 11895 A 96 96
53 Slovakia 11896 A 96 96
54 Slovakia 11897 C 96 96
55 Slovakia 11898 A 96 96
56 Slovakia 11899 A 96 96
57 Slovakia 11900 C 96 96
58 Slovakia 11901 T 96 96
59 Slovakia 11902 C 96 96
60 Slovakia 11903 A 96 96
61 Slovakia 11904 G 96 96
62 Slovakia 11905 A 96 96
63 Slovakia 11906 G 96 96
64 Slovakia 11907 T 96 96
65 Slovakia 11908 A 96 96
66 Slovakia 11909 G 96 96
67 Slovakia 11910 A 96 96
68 Slovakia 11911 A 96 96
69 Slovakia 11912 T 96 96
70 Slovakia 11913 C 96 96
71 Slovakia 11914 A 96 96
72 Slovakia 11915 T 96 96
73 Slovakia 11916 C 96 96
74 Slovakia 11917 A 96 96
75 Slovakia 11918 T 96 96
76 Slovakia 11919 C 96 96
77 Slovakia 11920 T 96 96
78 Slovakia 11921 A 96 96
79 Slovakia 11922 A 96 96
80 Slovakia 11923 A 96 96
81 Slovakia 11924 T 96 96
82 Slovakia 11925 T 96 96
83 Slovakia 11926 G 96 96
84 Slovakia 11927 T 96 96
85 Slovakia 11928 G 96 96
86 Slovakia 11929 G 96 96
87 Slovakia 11930 G 96 96
88 Slovakia 11931 C 96 96
89 Slovakia 11932 T 96 96
90 Slovakia 11933 C 96 96
91 Slovakia 11934 A 96 96
92 Slovakia 11935 A 96 96
93 Slovakia 11936 T 96 96
94 Slovakia 11937 G 96 96
95 Slovakia 11938 T 96 96
96 Slovakia 11939 G 96 96
97 Slovakia 11940 T 96 96
98 Slovakia 11941 C 96 96
99 Slovakia 11942 C 96 96
100 Slovakia 11943 A 96 96
101 Slovakia 11944 G 96 96
102 Slovakia 11945 T 96 96
103 Slovakia 11946 T 96 96
104 Slovakia 11947 A 96 96
105 Slovakia 11948 C 96 96
106 Slovakia 11949 A 96 96
107 Slovakia 11950 C 96 96
108 Slovakia 11951 A 96 96
109 Slovakia 11952 A 96 96
110 Slovakia 11953 T 96 96
111 Slovakia 11954 G 96 96
112 Slovakia 11955 A 96 96
113 Slovakia 11956 C 96 96
114 Slovakia 11957 A 96 96
115 Slovakia 11958 T 96 96
116 Slovakia 11959 T 96 96
117 Slovakia 11960 C 96 96
118 Slovakia 11961 T 96 96
119 Slovakia 11962 C 96 96
120 Slovakia 11963 T 96 96
121 Slovakia 11964 T 96 96
122 Slovakia 11965 A 96 96
123 Slovakia 11966 G 96 96
124 Slovakia 11967 C 96 96
125 Slovakia 11968 T 96 96
126 Slovakia 11969 A 96 96
127 Slovakia 11970 A 96 96
128 Slovakia 11971 A 96 96
129 Slovakia 11972 G 96 96
130 Slovakia 11973 A 96 96
131 Slovakia 11974 T 96 96
132 Slovakia 11975 A 96 96
133 Slovakia 11976 C 96 96
134 Slovakia 11977 T 96 96
135 Slovakia 11978 A 96 96
136 Slovakia 11979 C 96 96
137 Slovakia 11980 T 96 96
138 Slovakia 11981 G 96 96
139 Slovakia 11982 A 96 96
140 Slovakia 11983 A 96 96
141 Slovakia 11984 G 96 96
142 Slovakia 11985 C 96 96
143 Slovakia 11986 C 96 96
144 Slovakia 11987 T 96 96
145 Slovakia 11988 T 96 96
146 Slovakia 11989 T 96 96
147 Slovakia 11990 G 96 96
148 Slovakia 11991 A 96 96
149 Slovakia 11992 A 96 96
150 Slovakia 11993 A 96 96
151 Slovakia 11994 A 96 96
152 Slovakia 11995 A 96 96
153 Slovakia 11996 A 96 96
154 Slovakia 11997 T 96 96
155 Slovakia 11998 G 96 96
156 Slovakia 11999 G 96 96
157 Slovakia 12000 T 96 96
158 Slovakia 12001 T 96 96
159 Slovakia 12002 T 96 96
160 Slovakia 12003 C 96 96
161 Slovakia 12004 A 96 96
162 Slovakia 12005 C 96 96
163 Slovakia 12006 T 96 96
164 Slovakia 12007 A 96 96
165 Slovakia 12008 C 96 96
166 Slovakia 12009 T 96 96
167 Slovakia 12010 T 96 96
168 Slovakia 12011 T 96 96
169 Slovakia 12012 C 96 96
170 Slovakia 12013 T 96 96
171 Slovakia 12014 G 96 96
172 Slovakia 12015 T 96 96
173 Slovakia 12016 T 96 96
174 Slovakia 12017 T 96 96
175 Slovakia 12018 T 96 96
176 Slovakia 12019 G 96 96
177 Slovakia 12020 C 96 96
178 Slovakia 12021 T 96 96
179 Slovakia 12022 T 96 96
180 Slovakia 12023 T 96 96
181 Slovakia 12024 C 96 96
182 Slovakia 12025 C 96 96
183 Slovakia 12026 A 96 96
184 Slovakia 12027 T 96 96
185 Slovakia 12028 G 96 96
186 Slovakia 12029 C 96 96
187 Slovakia 12030 A 96 96
188 Slovakia 12031 G 96 96
189 Slovakia 12032 G 96 96
190 Slovakia 12033 G 96 96
191 Slovakia 12034 T 96 96
192 Slovakia 12035 G 96 96
193 Slovakia 12036 C 96 96
194 Slovakia 12037 T 96 96
195 Slovakia 12038 G 96 96
196 Slovakia 12039 T 96 96
197 Slovakia 12040 A 96 96
198 Slovakia 12041 G 96 96
199 Slovakia 12042 A 96 96
200 Slovakia 12043 C 96 96
201 Slovakia 12044 A 96 96
202 Slovakia 12045 T 96 96
203 Slovakia 12046 A 96 96
204 Slovakia 12047 A 96 96
205 Slovakia 12048 A 96 96
206 Slovakia 12049 C 96 96
207 Slovakia 12050 A 96 96
208 Slovakia 12051 A 96 96
209 Slovakia 12052 G 96 96
210 Slovakia 12053 C T 96 95 Leu3930Phe
211 Slovakia 12054 T 96 96
212 Slovakia 12055 T 96 96
213 Slovakia 12056 T 96 96
214 Slovakia 12057 G 96 96
215 Slovakia 12058 T 96 96
216 Slovakia 12059 G 96 96
217 Slovakia 12060 A 96 96
218 Slovakia 12061 A 96 96
219 Slovakia 12062 G 96 96
220 Slovakia 12063 A 96 96
221 Slovakia 12064 A 96 96
222 Slovakia 12065 A 96 96
223 Slovakia 12066 T 96 96
224 Slovakia 12067 G 96 96
225 Slovakia 12068 C 96 96
226 Slovakia 12069 T 96 96
227 Slovakia 12070 G 96 96
228 Slovakia 12071 G 96 96
229 Slovakia 12072 A 96 96
230 Slovakia 12073 C 96 96
231 Slovakia 12074 A 96 96
232 Slovakia 12075 A 96 96
233 Slovakia 12076 C 96 96
234 Slovakia 12077 A 96 96
235 Slovakia 12078 G 96 96
236 Slovakia 12079 G 96 96
237 Slovakia 12080 G 96 96
238 Slovakia 12081 C 96 96
239 Slovakia 12082 A 96 96
240 Slovakia 12083 A 96 96
241 Slovakia 12084 C 96 96
242 Slovakia 12085 C 96 96
243 Slovakia 12086 T 96 96
244 Slovakia 12087 T 96 96
245 Slovakia 12088 A 96 96
246 Slovakia 12089 C 96 96
247 Slovakia 12090 A 96 96
248 Slovakia 12091 A 96 96