National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W Y
-   249                                      
?                                          
A   15                             1        
C   9                                      
D   15     1                               1
E   15           1                          
F   3                                      
G   3                                      
H   3                                      
I   6                                      
K   18                       1              
L   45         1         5 1                
M   12               1                      
N   9                       1     1        
Q   18                                      
R   6                                      
S   30         1         2         1        
T   12               1               1      
V   27                                 1    
W   3                                      
Y                                          

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Singapore 11843 T 1731 1731
1 Singapore 11844 C 1731 1731
2 Singapore 11845 T 1731 1731
3 Singapore 11846 A 1731 1731
4 Singapore 11847 A 1731 1731
5 Singapore 11848 A 1731 1731
6 Singapore 11849 A 1731 1731
7 Singapore 11850 T 1731 1731
8 Singapore 11851 G T 1731 1730 Met3862Ile
9 Singapore 11852 T 1731 1731
10 Singapore 11853 C 1731 1731
11 Singapore 11854 A 1731 1731
12 Singapore 11855 G 1731 1731
13 Singapore 11856 A 1731 1731
14 Singapore 11857 T 1731 1731
15 Singapore 11858 G 1731 1731
16 Singapore 11859 T 1731 1731
17 Singapore 11860 A 1731 1731
18 Singapore 11861 A 1731 1731
19 Singapore 11862 A 1731 1731
20 Singapore 11863 G 1731 1731
21 Singapore 11864 T 1731 1731
22 Singapore 11865 G 1731 1731
23 Singapore 11866 C 1731 1731
24 Singapore 11867 A 1731 1731
25 Singapore 11868 C 1731 1731
26 Singapore 11869 A 1731 1731
27 Singapore 11870 T 1731 1731
28 Singapore 11871 C 1731 1731
29 Singapore 11872 A 1731 1731
30 Singapore 11873 G 1731 1731
31 Singapore 11874 T 1731 1731
32 Singapore 11875 A 1731 1731
33 Singapore 11876 G 1731 1731
34 Singapore 11877 T 1731 1731
35 Singapore 11878 C 1731 1731
36 Singapore 11879 T 1731 1731
37 Singapore 11880 T 1731 1731
38 Singapore 11881 A 1731 1731
39 Singapore 11882 C 1731 1731
40 Singapore 11883 T 1731 1731
41 Singapore 11884 C 1731 1731
42 Singapore 11885 T 1731 1731
43 Singapore 11886 C T 1731 1730 Ser3874Leu
44 Singapore 11887 A 1731 1731
45 Singapore 11888 G 1731 1731
46 Singapore 11889 T 1731 1731
47 Singapore 11890 T 1731 1731
48 Singapore 11891 T 1731 1731
49 Singapore 11892 T 1731 1731
50 Singapore 11893 G A 1731 1730 Leu3876Leu
51 Singapore 11894 C 1731 1731
52 Singapore 11895 A 1731 1731
53 Singapore 11896 A 1731 1731
54 Singapore 11897 C 1731 1731
55 Singapore 11898 A 1731 1731
56 Singapore 11899 A 1731 1731
57 Singapore 11900 C 1731 1731
58 Singapore 11901 T 1731 1730
59 Singapore 11902 C 1731 1731
60 Singapore 11903 A 1731 1731
61 Singapore 11904 G 1731 1731
62 Singapore 11905 A 1731 1731
63 Singapore 11906 G 1731 1731
64 Singapore 11907 T 1731 1731
65 Singapore 11908 A 1731 1731
66 Singapore 11909 G 1731 1731
67 Singapore 11910 A 1731 1731
68 Singapore 11911 A 1731 1731
69 Singapore 11912 T 1731 1731
70 Singapore 11913 C 1731 1731
71 Singapore 11914 A 1731 1731
72 Singapore 11915 T 1731 1731
73 Singapore 11916 C T 1731 1730 Ser3884Leu
74 Singapore 11917 A 1731 1731
75 Singapore 11918 T 1731 1731
76 Singapore 11919 C T 1731 1730 Ser3885Phe
77 Singapore 11920 T 1731 1731
78 Singapore 11921 A 1731 1731
79 Singapore 11922 A 1731 1731
80 Singapore 11923 A 1731 1731
81 Singapore 11924 T 1731 1731
82 Singapore 11925 T 1731 1731
83 Singapore 11926 G 1731 1731
84 Singapore 11927 T 1731 1731
85 Singapore 11928 G 1731 1731
86 Singapore 11929 G 1731 1731
87 Singapore 11930 G 1731 1731
88 Singapore 11931 C 1731 1731
89 Singapore 11932 T 1731 1731
90 Singapore 11933 C 1731 1731
91 Singapore 11934 A 1731 1731
92 Singapore 11935 A 1731 1731
93 Singapore 11936 T 1731 1731
94 Singapore 11937 G 1731 1731
95 Singapore 11938 T 1731 1731
96 Singapore 11939 G 1731 1731
97 Singapore 11940 T 1731 1731
98 Singapore 11941 C T 1731 1728 Val3892Val
99 Singapore 11942 C 1731 1731
100 Singapore 11943 A 1731 1731
101 Singapore 11944 G 1731 1731
102 Singapore 11945 T 1731 1731
103 Singapore 11946 T 1731 1731
104 Singapore 11947 A 1731 1731
105 Singapore 11948 C 1731 1731
106 Singapore 11949 A 1731 1731
107 Singapore 11950 C 1731 1731
108 Singapore 11951 A 1731 1731
109 Singapore 11952 A 1731 1731
110 Singapore 11953 T 1731 1731
111 Singapore 11954 G T 1731 1729 Asp3897Tyr
112 Singapore 11955 A 1731 1731
113 Singapore 11956 C T 1731 1730 Asp3897Asp
114 Singapore 11957 A 1731 1731
115 Singapore 11958 T 1731 1731
116 Singapore 11959 T 1731 1731
117 Singapore 11960 C 1731 1730
118 Singapore 11961 T 1731 1731
119 Singapore 11962 C T 1731 1729 Leu3899Leu
120 Singapore 11963 T 1731 1731
121 Singapore 11964 T 1731 1731
122 Singapore 11965 A 1731 1731
123 Singapore 11966 G T 1731 1730 Ala3901Ser
124 Singapore 11967 C 1731 1730
125 Singapore 11968 T 1731 1731
126 Singapore 11969 A 1731 1731
127 Singapore 11970 A 1731 1731
128 Singapore 11971 A 1731 1731
129 Singapore 11972 G 1731 1731
130 Singapore 11973 A 1731 1731
131 Singapore 11974 T 1731 1731
132 Singapore 11975 A 1731 1731
133 Singapore 11976 C 1731 1731
134 Singapore 11977 T 1731 1731
135 Singapore 11978 A 1731 1731
136 Singapore 11979 C 1731 1731
137 Singapore 11980 T 1731 1731
138 Singapore 11981 G 1731 1731
139 Singapore 11982 A 1731 1731
140 Singapore 11983 A 1731 1731
141 Singapore 11984 G 1731 1731
142 Singapore 11985 C 1731 1731
143 Singapore 11986 C 1731 1731
144 Singapore 11987 T 1731 1731
145 Singapore 11988 T 1731 1731
146 Singapore 11989 T 1731 1731
147 Singapore 11990 G 1731 1731
148 Singapore 11991 A G 1731 1729 Glu3909Gly
149 Singapore 11992 A 1731 1731
150 Singapore 11993 A 1731 1731
151 Singapore 11994 A 1731 1731
152 Singapore 11995 A 1731 1731
153 Singapore 11996 A 1731 1731
154 Singapore 11997 T 1731 1731
155 Singapore 11998 G 1731 1731
156 Singapore 11999 G 1731 1731
157 Singapore 12000 T 1731 1731
158 Singapore 12001 T 1731 1731
159 Singapore 12002 T 1731 1731
160 Singapore 12003 C 1731 1731
161 Singapore 12004 A 1731 1731
162 Singapore 12005 C 1731 1731
163 Singapore 12006 T 1731 1731
164 Singapore 12007 A 1731 1731
165 Singapore 12008 C 1731 1731
166 Singapore 12009 T 1731 1731
167 Singapore 12010 T 1731 1731
168 Singapore 12011 T 1731 1731
169 Singapore 12012 C 1731 1731
170 Singapore 12013 T G 1731 1730 Ser3916Ser
171 Singapore 12014 G 1731 1731
172 Singapore 12015 T 1731 1731
173 Singapore 12016 T 1731 1731
174 Singapore 12017 T 1731 1731
175 Singapore 12018 T 1731 1731
176 Singapore 12019 G 1731 1731
177 Singapore 12020 C 1731 1731
178 Singapore 12021 T 1731 1731
179 Singapore 12022 T 1731 1731
180 Singapore 12023 T 1731 1731
181 Singapore 12024 C 1731 1731
182 Singapore 12025 C 1731 1731
183 Singapore 12026 A 1731 1731
184 Singapore 12027 T 1731 1731
185 Singapore 12028 G 1731 1731
186 Singapore 12029 C 1731 1731
187 Singapore 12030 A 1731 1731
188 Singapore 12031 G 1731 1731
189 Singapore 12032 G 1731 1731
190 Singapore 12033 G 1731 1731
191 Singapore 12034 T 1731 1731
192 Singapore 12035 G 1731 1731
193 Singapore 12036 C 1731 1731
194 Singapore 12037 T 1731 1731
195 Singapore 12038 G 1731 1731
196 Singapore 12039 T 1731 1731
197 Singapore 12040 A 1731 1731
198 Singapore 12041 G 1731 1731
199 Singapore 12042 A 1731 1731
200 Singapore 12043 C 1731 1730
201 Singapore 12044 A 1731 1731
202 Singapore 12045 T 1731 1731
203 Singapore 12046 A 1731 1731
204 Singapore 12047 A 1731 1731
205 Singapore 12048 A 1731 1731
206 Singapore 12049 C 1731 1731
207 Singapore 12050 A 1731 1731
208 Singapore 12051 A 1731 1731
209 Singapore 12052 G T 1731 1730 Lys3929Asn
210 Singapore 12053 C T 1731 1727 Leu3930Phe
211 Singapore 12054 T 1731 1731
212 Singapore 12055 T 1731 1731
213 Singapore 12056 T 1731 1731
214 Singapore 12057 G 1731 1731
215 Singapore 12058 T 1731 1731
216 Singapore 12059 G 1731 1731
217 Singapore 12060 A 1731 1731
218 Singapore 12061 A 1731 1731
219 Singapore 12062 G 1731 1731
220 Singapore 12063 A 1731 1731
221 Singapore 12064 A 1731 1731
222 Singapore 12065 A 1731 1731
223 Singapore 12066 T 1731 1731
224 Singapore 12067 G 1731 1731
225 Singapore 12068 C T,A 1731 1729 Leu3935Met-p.Leu3935Leu
226 Singapore 12069 T 1731 1731
227 Singapore 12070 G T 1731 1730 Leu3935Leu
228 Singapore 12071 G 1731 1731
229 Singapore 12072 A 1731 1731
230 Singapore 12073 C 1731 1731
231 Singapore 12074 A 1731 1731
232 Singapore 12075 A G 1731 1729 Asn3937Ser
233 Singapore 12076 C T 1731 1730 Asn3937Asn
234 Singapore 12077 A 1731 1731
235 Singapore 12078 G 1731 1731
236 Singapore 12079 G 1731 1731
237 Singapore 12080 G 1731 1731
238 Singapore 12081 C 1731 1731
239 Singapore 12082 A 1731 1731
240 Singapore 12083 A 1731 1731
241 Singapore 12084 C T 1731 1730 Thr3940Ile
242 Singapore 12085 C T 1731 1729 Thr3940Thr
243 Singapore 12086 T C 1731 1728 Leu3941Leu
244 Singapore 12087 T 1731 1731
245 Singapore 12088 A 1731 1731
246 Singapore 12089 C 1731 1731
247 Singapore 12090 A 1731 1731
248 Singapore 12091 A 1731 1731