National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                       1            
L   45                                    
M   12               1                 1  
N   9                                    
Q   18                                    
R   6                                    
S   30                   1                
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Serbia 11843 T 147 147
1 Serbia 11844 C 147 147
2 Serbia 11845 T 147 147
3 Serbia 11846 A 147 147
4 Serbia 11847 A 147 147
5 Serbia 11848 A 147 147
6 Serbia 11849 A 147 147
7 Serbia 11850 T 147 147
8 Serbia 11851 G T 147 145 Met3862Ile
9 Serbia 11852 T 147 147
10 Serbia 11853 C 147 147
11 Serbia 11854 A 147 147
12 Serbia 11855 G 147 147
13 Serbia 11856 A 147 147
14 Serbia 11857 T 147 147
15 Serbia 11858 G 147 147
16 Serbia 11859 T 147 147
17 Serbia 11860 A 147 147
18 Serbia 11861 A 147 147
19 Serbia 11862 A 147 147
20 Serbia 11863 G 147 147
21 Serbia 11864 T 147 147
22 Serbia 11865 G 147 147
23 Serbia 11866 C 147 147
24 Serbia 11867 A 147 147
25 Serbia 11868 C 147 147
26 Serbia 11869 A 147 147
27 Serbia 11870 T 147 147
28 Serbia 11871 C 147 147
29 Serbia 11872 A 147 147
30 Serbia 11873 G 147 147
31 Serbia 11874 T 147 147
32 Serbia 11875 A 147 147
33 Serbia 11876 G 147 147
34 Serbia 11877 T 147 147
35 Serbia 11878 C 147 147
36 Serbia 11879 T 147 147
37 Serbia 11880 T 147 147
38 Serbia 11881 A 147 147
39 Serbia 11882 C 147 147
40 Serbia 11883 T 147 147
41 Serbia 11884 C 147 147
42 Serbia 11885 T 147 147
43 Serbia 11886 C 147 147
44 Serbia 11887 A 147 147
45 Serbia 11888 G 147 147
46 Serbia 11889 T 147 147
47 Serbia 11890 T 147 147
48 Serbia 11891 T 147 147
49 Serbia 11892 T 147 147
50 Serbia 11893 G 147 147
51 Serbia 11894 C 147 147
52 Serbia 11895 A 147 147
53 Serbia 11896 A 147 147
54 Serbia 11897 C 147 147
55 Serbia 11898 A 147 147
56 Serbia 11899 A 147 147
57 Serbia 11900 C 147 147
58 Serbia 11901 T 147 147
59 Serbia 11902 C 147 147
60 Serbia 11903 A 147 147
61 Serbia 11904 G 147 147
62 Serbia 11905 A 147 147
63 Serbia 11906 G 147 147
64 Serbia 11907 T 147 147
65 Serbia 11908 A 147 147
66 Serbia 11909 G 147 147
67 Serbia 11910 A 147 147
68 Serbia 11911 A 147 147
69 Serbia 11912 T 147 147
70 Serbia 11913 C 147 147
71 Serbia 11914 A 147 147
72 Serbia 11915 T 147 147
73 Serbia 11916 C T 147 146 Ser3884Leu
74 Serbia 11917 A 147 147
75 Serbia 11918 T 147 147
76 Serbia 11919 C 147 147
77 Serbia 11920 T 147 147
78 Serbia 11921 A 147 147
79 Serbia 11922 A 147 147
80 Serbia 11923 A 147 147
81 Serbia 11924 T 147 147
82 Serbia 11925 T 147 147
83 Serbia 11926 G 147 147
84 Serbia 11927 T 147 147
85 Serbia 11928 G 147 147
86 Serbia 11929 G 147 147
87 Serbia 11930 G 147 147
88 Serbia 11931 C 147 147
89 Serbia 11932 T 147 147
90 Serbia 11933 C 147 147
91 Serbia 11934 A 147 147
92 Serbia 11935 A 147 147
93 Serbia 11936 T 147 147
94 Serbia 11937 G 147 147
95 Serbia 11938 T 147 147
96 Serbia 11939 G 147 147
97 Serbia 11940 T 147 147
98 Serbia 11941 C 147 147
99 Serbia 11942 C 147 147
100 Serbia 11943 A 147 147
101 Serbia 11944 G 147 147
102 Serbia 11945 T 147 147
103 Serbia 11946 T 147 147
104 Serbia 11947 A 147 147
105 Serbia 11948 C 147 147
106 Serbia 11949 A 147 147
107 Serbia 11950 C 147 147
108 Serbia 11951 A 147 147
109 Serbia 11952 A 147 147
110 Serbia 11953 T 147 147
111 Serbia 11954 G 147 147
112 Serbia 11955 A 147 147
113 Serbia 11956 C 147 147
114 Serbia 11957 A 147 147
115 Serbia 11958 T 147 147
116 Serbia 11959 T 147 147
117 Serbia 11960 C 147 147
118 Serbia 11961 T 147 147
119 Serbia 11962 C 147 147
120 Serbia 11963 T 147 147
121 Serbia 11964 T 147 147
122 Serbia 11965 A 147 147
123 Serbia 11966 G 147 147
124 Serbia 11967 C 147 147
125 Serbia 11968 T 147 147
126 Serbia 11969 A 147 147
127 Serbia 11970 A 147 147
128 Serbia 11971 A 147 147
129 Serbia 11972 G 147 147
130 Serbia 11973 A 147 147
131 Serbia 11974 T 147 147
132 Serbia 11975 A 147 147
133 Serbia 11976 C 147 147
134 Serbia 11977 T 147 147
135 Serbia 11978 A 147 147
136 Serbia 11979 C 147 147
137 Serbia 11980 T 147 147
138 Serbia 11981 G 147 147
139 Serbia 11982 A 147 147
140 Serbia 11983 A 147 147
141 Serbia 11984 G 147 147
142 Serbia 11985 C 147 147
143 Serbia 11986 C 147 147
144 Serbia 11987 T 147 147
145 Serbia 11988 T 147 147
146 Serbia 11989 T 147 147
147 Serbia 11990 G 147 147
148 Serbia 11991 A 147 147
149 Serbia 11992 A 147 147
150 Serbia 11993 A 147 147
151 Serbia 11994 A 147 147
152 Serbia 11995 A 147 147
153 Serbia 11996 A 147 147
154 Serbia 11997 T 147 147
155 Serbia 11998 G 147 147
156 Serbia 11999 G 147 147
157 Serbia 12000 T 147 147
158 Serbia 12001 T 147 147
159 Serbia 12002 T 147 147
160 Serbia 12003 C 147 147
161 Serbia 12004 A 147 147
162 Serbia 12005 C 147 147
163 Serbia 12006 T 147 147
164 Serbia 12007 A 147 147
165 Serbia 12008 C 147 147
166 Serbia 12009 T 147 147
167 Serbia 12010 T 147 147
168 Serbia 12011 T 147 147
169 Serbia 12012 C 147 147
170 Serbia 12013 T 147 147
171 Serbia 12014 G 147 147
172 Serbia 12015 T 147 147
173 Serbia 12016 T 147 147
174 Serbia 12017 T 147 147
175 Serbia 12018 T 147 147
176 Serbia 12019 G 147 147
177 Serbia 12020 C 147 147
178 Serbia 12021 T 147 147
179 Serbia 12022 T 147 147
180 Serbia 12023 T 147 147
181 Serbia 12024 C 147 147
182 Serbia 12025 C 147 147
183 Serbia 12026 A G 147 146 Met3921Val
184 Serbia 12027 T 147 147
185 Serbia 12028 G 147 147
186 Serbia 12029 C 147 147
187 Serbia 12030 A 147 147
188 Serbia 12031 G 147 147
189 Serbia 12032 G 147 147
190 Serbia 12033 G 147 147
191 Serbia 12034 T 147 147
192 Serbia 12035 G 147 147
193 Serbia 12036 C 147 147
194 Serbia 12037 T 147 147
195 Serbia 12038 G 147 147
196 Serbia 12039 T 147 147
197 Serbia 12040 A 147 147
198 Serbia 12041 G 147 147
199 Serbia 12042 A 147 147
200 Serbia 12043 C 147 147
201 Serbia 12044 A 147 147
202 Serbia 12045 T 147 147
203 Serbia 12046 A 147 147
204 Serbia 12047 A 147 147
205 Serbia 12048 A 147 147
206 Serbia 12049 C 147 147
207 Serbia 12050 A 147 147
208 Serbia 12051 A 147 147
209 Serbia 12052 G T 147 143 Lys3929Asn
210 Serbia 12053 C 147 147
211 Serbia 12054 T 147 147
212 Serbia 12055 T 147 147
213 Serbia 12056 T 147 147
214 Serbia 12057 G 147 147
215 Serbia 12058 T 147 147
216 Serbia 12059 G 147 147
217 Serbia 12060 A 147 147
218 Serbia 12061 A 147 147
219 Serbia 12062 G 147 147
220 Serbia 12063 A 147 147
221 Serbia 12064 A 147 147
222 Serbia 12065 A 147 147
223 Serbia 12066 T 147 147
224 Serbia 12067 G 147 147
225 Serbia 12068 C 147 147
226 Serbia 12069 T 147 147
227 Serbia 12070 G 147 147
228 Serbia 12071 G 147 147
229 Serbia 12072 A 147 147
230 Serbia 12073 C 147 147
231 Serbia 12074 A 147 147
232 Serbia 12075 A 147 147
233 Serbia 12076 C 147 147
234 Serbia 12077 A 147 147
235 Serbia 12078 G 147 147
236 Serbia 12079 G 147 147
237 Serbia 12080 G 147 147
238 Serbia 12081 C 147 147
239 Serbia 12082 A 147 147
240 Serbia 12083 A 147 147
241 Serbia 12084 C 147 147
242 Serbia 12085 C 147 147
243 Serbia 12086 T 147 147
244 Serbia 12087 T 147 147
245 Serbia 12088 A 147 147
246 Serbia 12089 C 147 147
247 Serbia 12090 A 147 147
248 Serbia 12091 A 147 147