National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W Y
-   249                                      
?                                          
A   15                                      
C   9                                     1
D   15                                      
E   15                                      
F   3                                      
G   3                                      
H   3                                      
I   6                                      
K   18                                      
L   45                   1                  
M   12                                      
N   9                                      
Q   18                                      
R   6                                      
S   30                                      
T   12                             1        
V   27                                 1    
W   3                                      
Y                                          

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Senegal 11843 T 135 135
1 Senegal 11844 C 135 135
2 Senegal 11845 T 135 135
3 Senegal 11846 A 135 135
4 Senegal 11847 A 135 135
5 Senegal 11848 A 135 135
6 Senegal 11849 A 135 135
7 Senegal 11850 T 135 135
8 Senegal 11851 G 135 135
9 Senegal 11852 T 135 135
10 Senegal 11853 C 135 135
11 Senegal 11854 A 135 135
12 Senegal 11855 G 135 135
13 Senegal 11856 A 135 135
14 Senegal 11857 T 135 135
15 Senegal 11858 G 135 135
16 Senegal 11859 T 135 135
17 Senegal 11860 A G 135 134 Val3865Val
18 Senegal 11861 A 135 135
19 Senegal 11862 A 135 135
20 Senegal 11863 G 135 135
21 Senegal 11864 T 135 135
22 Senegal 11865 G A 135 133 Cys3867Tyr
23 Senegal 11866 C 135 135
24 Senegal 11867 A T 135 133 Thr3868Ser
25 Senegal 11868 C 135 135
26 Senegal 11869 A 136 136
27 Senegal 11870 T 136 136
28 Senegal 11871 C 136 136
29 Senegal 11872 A 136 136
30 Senegal 11873 G 136 136
31 Senegal 11874 T 136 136
32 Senegal 11875 A 136 136
33 Senegal 11876 G 136 136
34 Senegal 11877 T 136 136
35 Senegal 11878 C 136 136
36 Senegal 11879 T 136 136
37 Senegal 11880 T 136 136
38 Senegal 11881 A 136 136
39 Senegal 11882 C 136 136
40 Senegal 11883 T 136 136
41 Senegal 11884 C 136 136
42 Senegal 11885 T 136 136
43 Senegal 11886 C 136 136
44 Senegal 11887 A 136 136
45 Senegal 11888 G 136 136
46 Senegal 11889 T 136 136
47 Senegal 11890 T 136 136
48 Senegal 11891 T 136 136
49 Senegal 11892 T 136 136
50 Senegal 11893 G 136 136
51 Senegal 11894 C 136 136
52 Senegal 11895 A 136 136
53 Senegal 11896 A 136 136
54 Senegal 11897 C 136 136
55 Senegal 11898 A 136 136
56 Senegal 11899 A 136 136
57 Senegal 11900 C 136 136
58 Senegal 11901 T 136 136
59 Senegal 11902 C 136 136
60 Senegal 11903 A 136 136
61 Senegal 11904 G 136 136
62 Senegal 11905 A 136 136
63 Senegal 11906 G 136 136
64 Senegal 11907 T 136 136
65 Senegal 11908 A 136 136
66 Senegal 11909 G 136 136
67 Senegal 11910 A 136 136
68 Senegal 11911 A 136 136
69 Senegal 11912 T 136 136
70 Senegal 11913 C 136 136
71 Senegal 11914 A 136 136
72 Senegal 11915 T 136 136
73 Senegal 11916 C 136 136
74 Senegal 11917 A 136 136
75 Senegal 11918 T 136 136
76 Senegal 11919 C 136 136
77 Senegal 11920 T 136 136
78 Senegal 11921 A 136 136
79 Senegal 11922 A 136 136
80 Senegal 11923 A 136 136
81 Senegal 11924 T 136 136
82 Senegal 11925 T 136 136
83 Senegal 11926 G 136 136
84 Senegal 11927 T 136 136
85 Senegal 11928 G 136 136
86 Senegal 11929 G 136 136
87 Senegal 11930 G 136 136
88 Senegal 11931 C 136 136
89 Senegal 11932 T 136 136
90 Senegal 11933 C 136 136
91 Senegal 11934 A 136 136
92 Senegal 11935 A 136 136
93 Senegal 11936 T 136 136
94 Senegal 11937 G 136 136
95 Senegal 11938 T 136 136
96 Senegal 11939 G 136 136
97 Senegal 11940 T 136 136
98 Senegal 11941 C 136 136
99 Senegal 11942 C 136 136
100 Senegal 11943 A 136 136
101 Senegal 11944 G 136 136
102 Senegal 11945 T 136 136
103 Senegal 11946 T 136 136
104 Senegal 11947 A 136 136
105 Senegal 11948 C 136 136
106 Senegal 11949 A 136 136
107 Senegal 11950 C 136 136
108 Senegal 11951 A 136 136
109 Senegal 11952 A 136 136
110 Senegal 11953 T 136 136
111 Senegal 11954 G 136 136
112 Senegal 11955 A 136 136
113 Senegal 11956 C 136 136
114 Senegal 11957 A 136 136
115 Senegal 11958 T 136 136
116 Senegal 11959 T 136 136
117 Senegal 11960 C 136 136
118 Senegal 11961 T 136 136
119 Senegal 11962 C 136 136
120 Senegal 11963 T 136 136
121 Senegal 11964 T 136 136
122 Senegal 11965 A 136 136
123 Senegal 11966 G 136 136
124 Senegal 11967 C 136 136
125 Senegal 11968 T 136 136
126 Senegal 11969 A 136 136
127 Senegal 11970 A 136 136
128 Senegal 11971 A 136 136
129 Senegal 11972 G 136 136
130 Senegal 11973 A 136 136
131 Senegal 11974 T 136 136
132 Senegal 11975 A 136 136
133 Senegal 11976 C 136 136
134 Senegal 11977 T 136 136
135 Senegal 11978 A 136 136
136 Senegal 11979 C 136 136
137 Senegal 11980 T 136 136
138 Senegal 11981 G 136 136
139 Senegal 11982 A 136 136
140 Senegal 11983 A 136 136
141 Senegal 11984 G 136 136
142 Senegal 11985 C 136 136
143 Senegal 11986 C 136 136
144 Senegal 11987 T 136 136
145 Senegal 11988 T 136 136
146 Senegal 11989 T 136 136
147 Senegal 11990 G 136 136
148 Senegal 11991 A 136 136
149 Senegal 11992 A 136 136
150 Senegal 11993 A 136 136
151 Senegal 11994 A 136 136
152 Senegal 11995 A 136 136
153 Senegal 11996 A 136 136
154 Senegal 11997 T 136 136
155 Senegal 11998 G 136 136
156 Senegal 11999 G 136 136
157 Senegal 12000 T 136 136
158 Senegal 12001 T 136 136
159 Senegal 12002 T 136 136
160 Senegal 12003 C 136 136
161 Senegal 12004 A 136 136
162 Senegal 12005 C 136 136
163 Senegal 12006 T 136 136
164 Senegal 12007 A 136 136
165 Senegal 12008 C 136 136
166 Senegal 12009 T 136 136
167 Senegal 12010 T 136 136
168 Senegal 12011 T 136 136
169 Senegal 12012 C 136 136
170 Senegal 12013 T 136 136
171 Senegal 12014 G 136 136
172 Senegal 12015 T 136 136
173 Senegal 12016 T 136 136
174 Senegal 12017 T C 136 135 Leu3918Leu
175 Senegal 12018 T 136 136
176 Senegal 12019 G 136 136
177 Senegal 12020 C 136 136
178 Senegal 12021 T 136 136
179 Senegal 12022 T 136 136
180 Senegal 12023 T 136 136
181 Senegal 12024 C 136 136
182 Senegal 12025 C 136 136
183 Senegal 12026 A 136 136
184 Senegal 12027 T 136 136
185 Senegal 12028 G 136 136
186 Senegal 12029 C 136 136
187 Senegal 12030 A 136 136
188 Senegal 12031 G 136 136
189 Senegal 12032 G 136 136
190 Senegal 12033 G 136 136
191 Senegal 12034 T 136 136
192 Senegal 12035 G 136 136
193 Senegal 12036 C 136 136
194 Senegal 12037 T 136 136
195 Senegal 12038 G 136 136
196 Senegal 12039 T 136 136
197 Senegal 12040 A 136 136
198 Senegal 12041 G 136 136
199 Senegal 12042 A 136 136
200 Senegal 12043 C 136 136
201 Senegal 12044 A 136 136
202 Senegal 12045 T 136 136
203 Senegal 12046 A 136 136
204 Senegal 12047 A 136 136
205 Senegal 12048 A 136 136
206 Senegal 12049 C 136 136
207 Senegal 12050 A 136 136
208 Senegal 12051 A 136 136
209 Senegal 12052 G 136 136
210 Senegal 12053 C 136 136
211 Senegal 12054 T 136 136
212 Senegal 12055 T 136 136
213 Senegal 12056 T 136 136
214 Senegal 12057 G 136 136
215 Senegal 12058 T 136 136
216 Senegal 12059 G 136 136
217 Senegal 12060 A 136 136
218 Senegal 12061 A 136 136
219 Senegal 12062 G 136 136
220 Senegal 12063 A 136 136
221 Senegal 12064 A 136 136
222 Senegal 12065 A 136 136
223 Senegal 12066 T 136 136
224 Senegal 12067 G 136 136
225 Senegal 12068 C 136 136
226 Senegal 12069 T 136 136
227 Senegal 12070 G 136 136
228 Senegal 12071 G 136 136
229 Senegal 12072 A 136 136
230 Senegal 12073 C 136 136
231 Senegal 12074 A 136 136
232 Senegal 12075 A 136 136
233 Senegal 12076 C 136 136
234 Senegal 12077 A 136 136
235 Senegal 12078 G 136 136
236 Senegal 12079 G 136 136
237 Senegal 12080 G 136 136
238 Senegal 12081 C 136 136
239 Senegal 12082 A 136 136
240 Senegal 12083 A 136 136
241 Senegal 12084 C 136 136
242 Senegal 12085 C 136 136
243 Senegal 12086 T 136 136
244 Senegal 12087 T 136 136
245 Senegal 12088 A 136 136
246 Senegal 12089 C 136 136
247 Senegal 12090 A 136 136
248 Senegal 12091 A 136 136