National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45         1                          
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Rwanda 11843 T 26 26
1 Rwanda 11844 C 26 26
2 Rwanda 11845 T 26 26
3 Rwanda 11846 A 26 26
4 Rwanda 11847 A 26 26
5 Rwanda 11848 A 26 26
6 Rwanda 11849 A 26 26
7 Rwanda 11850 T 26 26
8 Rwanda 11851 G 26 26
9 Rwanda 11852 T 26 26
10 Rwanda 11853 C 26 26
11 Rwanda 11854 A 26 26
12 Rwanda 11855 G 26 26
13 Rwanda 11856 A 26 26
14 Rwanda 11857 T 26 26
15 Rwanda 11858 G 26 26
16 Rwanda 11859 T 26 26
17 Rwanda 11860 A 26 26
18 Rwanda 11861 A 26 26
19 Rwanda 11862 A 26 26
20 Rwanda 11863 G 26 26
21 Rwanda 11864 T 26 26
22 Rwanda 11865 G 26 26
23 Rwanda 11866 C 26 26
24 Rwanda 11867 A 26 26
25 Rwanda 11868 C 26 26
26 Rwanda 11869 A 26 26
27 Rwanda 11870 T 26 26
28 Rwanda 11871 C 26 26
29 Rwanda 11872 A 26 26
30 Rwanda 11873 G 26 26
31 Rwanda 11874 T 26 26
32 Rwanda 11875 A 26 26
33 Rwanda 11876 G 26 26
34 Rwanda 11877 T 26 26
35 Rwanda 11878 C 26 26
36 Rwanda 11879 T 26 26
37 Rwanda 11880 T 26 26
38 Rwanda 11881 A 26 26
39 Rwanda 11882 C 26 26
40 Rwanda 11883 T 26 26
41 Rwanda 11884 C 26 26
42 Rwanda 11885 T 26 26
43 Rwanda 11886 C 26 26
44 Rwanda 11887 A 26 26
45 Rwanda 11888 G 26 26
46 Rwanda 11889 T 26 26
47 Rwanda 11890 T 33 33
48 Rwanda 11891 T 33 33
49 Rwanda 11892 T 33 33
50 Rwanda 11893 G 33 33
51 Rwanda 11894 C 33 33
52 Rwanda 11895 A 33 33
53 Rwanda 11896 A 33 33
54 Rwanda 11897 C 33 33
55 Rwanda 11898 A 33 33
56 Rwanda 11899 A 33 33
57 Rwanda 11900 C 33 33
58 Rwanda 11901 T 33 33
59 Rwanda 11902 C 33 33
60 Rwanda 11903 A 33 33
61 Rwanda 11904 G 33 33
62 Rwanda 11905 A 33 33
63 Rwanda 11906 G 33 33
64 Rwanda 11907 T 33 33
65 Rwanda 11908 A 33 33
66 Rwanda 11909 G 33 33
67 Rwanda 11910 A 33 33
68 Rwanda 11911 A 33 33
69 Rwanda 11912 T 33 33
70 Rwanda 11913 C 33 33
71 Rwanda 11914 A 33 33
72 Rwanda 11915 T 33 33
73 Rwanda 11916 C 33 33
74 Rwanda 11917 A 33 33
75 Rwanda 11918 T 33 33
76 Rwanda 11919 C 33 33
77 Rwanda 11920 T 33 33
78 Rwanda 11921 A 33 33
79 Rwanda 11922 A 33 33
80 Rwanda 11923 A 33 33
81 Rwanda 11924 T 33 33
82 Rwanda 11925 T 33 33
83 Rwanda 11926 G 33 33
84 Rwanda 11927 T 33 33
85 Rwanda 11928 G 33 33
86 Rwanda 11929 G 33 33
87 Rwanda 11930 G 33 33
88 Rwanda 11931 C 33 33
89 Rwanda 11932 T 33 33
90 Rwanda 11933 C 33 33
91 Rwanda 11934 A 33 33
92 Rwanda 11935 A 33 33
93 Rwanda 11936 T 33 33
94 Rwanda 11937 G 33 33
95 Rwanda 11938 T 33 33
96 Rwanda 11939 G 33 33
97 Rwanda 11940 T 33 33
98 Rwanda 11941 C 33 33
99 Rwanda 11942 C 33 33
100 Rwanda 11943 A 33 33
101 Rwanda 11944 G 33 33
102 Rwanda 11945 T 33 33
103 Rwanda 11946 T 33 33
104 Rwanda 11947 A 33 33
105 Rwanda 11948 C 33 33
106 Rwanda 11949 A 33 33
107 Rwanda 11950 C 33 33
108 Rwanda 11951 A 33 33
109 Rwanda 11952 A 33 33
110 Rwanda 11953 T 33 33
111 Rwanda 11954 G 33 33
112 Rwanda 11955 A 33 33
113 Rwanda 11956 C 33 33
114 Rwanda 11957 A 33 33
115 Rwanda 11958 T 33 33
116 Rwanda 11959 T 33 33
117 Rwanda 11960 C 33 33
118 Rwanda 11961 T 33 33
119 Rwanda 11962 C 33 33
120 Rwanda 11963 T 33 33
121 Rwanda 11964 T 33 33
122 Rwanda 11965 A 33 33
123 Rwanda 11966 G 33 33
124 Rwanda 11967 C 33 33
125 Rwanda 11968 T 33 33
126 Rwanda 11969 A 33 33
127 Rwanda 11970 A 33 33
128 Rwanda 11971 A 33 33
129 Rwanda 11972 G 33 33
130 Rwanda 11973 A 33 33
131 Rwanda 11974 T 33 33
132 Rwanda 11975 A 33 33
133 Rwanda 11976 C 33 33
134 Rwanda 11977 T 33 33
135 Rwanda 11978 A 33 33
136 Rwanda 11979 C 33 33
137 Rwanda 11980 T 33 33
138 Rwanda 11981 G 33 33
139 Rwanda 11982 A 33 33
140 Rwanda 11983 A 33 33
141 Rwanda 11984 G 33 33
142 Rwanda 11985 C 33 33
143 Rwanda 11986 C 33 33
144 Rwanda 11987 T 33 33
145 Rwanda 11988 T 33 33
146 Rwanda 11989 T 33 33
147 Rwanda 11990 G 33 30
148 Rwanda 11991 A 33 33
149 Rwanda 11992 A 33 33
150 Rwanda 11993 A 33 33
151 Rwanda 11994 A 33 33
152 Rwanda 11995 A 33 33
153 Rwanda 11996 A 33 33
154 Rwanda 11997 T 33 33
155 Rwanda 11998 G 33 33
156 Rwanda 11999 G 33 33
157 Rwanda 12000 T 33 33
158 Rwanda 12001 T 33 33
159 Rwanda 12002 T 33 33
160 Rwanda 12003 C 33 33
161 Rwanda 12004 A 33 33
162 Rwanda 12005 C 33 33
163 Rwanda 12006 T 33 33
164 Rwanda 12007 A 33 33
165 Rwanda 12008 C 33 33
166 Rwanda 12009 T 33 33
167 Rwanda 12010 T 33 33
168 Rwanda 12011 T 33 33
169 Rwanda 12012 C 33 33
170 Rwanda 12013 T 33 33
171 Rwanda 12014 G 33 33
172 Rwanda 12015 T 33 33
173 Rwanda 12016 T 33 33
174 Rwanda 12017 T 33 33
175 Rwanda 12018 T 33 33
176 Rwanda 12019 G 33 33
177 Rwanda 12020 C 33 33
178 Rwanda 12021 T 33 33
179 Rwanda 12022 T 33 33
180 Rwanda 12023 T 33 33
181 Rwanda 12024 C 33 33
182 Rwanda 12025 C 33 33
183 Rwanda 12026 A 33 33
184 Rwanda 12027 T 33 33
185 Rwanda 12028 G 33 33
186 Rwanda 12029 C 33 33
187 Rwanda 12030 A 33 33
188 Rwanda 12031 G 33 33
189 Rwanda 12032 G 33 33
190 Rwanda 12033 G 33 33
191 Rwanda 12034 T 33 33
192 Rwanda 12035 G 33 33
193 Rwanda 12036 C 33 33
194 Rwanda 12037 T 33 33
195 Rwanda 12038 G 33 33
196 Rwanda 12039 T 33 33
197 Rwanda 12040 A 33 33
198 Rwanda 12041 G 33 33
199 Rwanda 12042 A 33 33
200 Rwanda 12043 C 33 33
201 Rwanda 12044 A 33 33
202 Rwanda 12045 T 33 33
203 Rwanda 12046 A 33 33
204 Rwanda 12047 A 33 33
205 Rwanda 12048 A 33 33
206 Rwanda 12049 C 33 33
207 Rwanda 12050 A 33 33
208 Rwanda 12051 A 33 33
209 Rwanda 12052 G 33 33
210 Rwanda 12053 C T 33 32 Leu3930Phe
211 Rwanda 12054 T 33 33
212 Rwanda 12055 T 33 33
213 Rwanda 12056 T 33 33
214 Rwanda 12057 G 33 33
215 Rwanda 12058 T 33 33
216 Rwanda 12059 G 33 33
217 Rwanda 12060 A 33 33
218 Rwanda 12061 A 33 33
219 Rwanda 12062 G 33 33
220 Rwanda 12063 A 33 33
221 Rwanda 12064 A 33 33
222 Rwanda 12065 A 33 33
223 Rwanda 12066 T 33 33
224 Rwanda 12067 G 33 33
225 Rwanda 12068 C 33 33
226 Rwanda 12069 T 33 33
227 Rwanda 12070 G 33 33
228 Rwanda 12071 G 33 33
229 Rwanda 12072 A 33 33
230 Rwanda 12073 C 33 33
231 Rwanda 12074 A 33 33
232 Rwanda 12075 A 33 33
233 Rwanda 12076 C 33 33
234 Rwanda 12077 A 33 33
235 Rwanda 12078 G 33 33
236 Rwanda 12079 G 33 33
237 Rwanda 12080 G 33 33
238 Rwanda 12081 C 33 33
239 Rwanda 12082 A 33 33
240 Rwanda 12083 A 33 33
241 Rwanda 12084 C 33 33
242 Rwanda 12085 C 33 33
243 Rwanda 12086 T 33 33
244 Rwanda 12087 T 33 33
245 Rwanda 12088 A 33 33
246 Rwanda 12089 C 33 33
247 Rwanda 12090 A 33 33
248 Rwanda 12091 A 33 33