National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15 1                               2  
C   9   2                                
D   15     4     1           1            
E   15     1                              
F   3                                    
G   3   1                                
H   3             1                      
I   6                                    
K   18                       1 1 1        
L   45         4         3                
M   12               4                    
N   9                       2            
Q   18                         1          
R   6                                    
S   30         1         1         2      
T   12               1                    
V   27 1         1   1                 4  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Russia 11843 T 1807 1807
1 Russia 11844 C 1808 1808
2 Russia 11845 T 1808 1808
3 Russia 11846 A 1808 1808
4 Russia 11847 A G 1808 1807 Lys3861Arg
5 Russia 11848 A 1808 1808
6 Russia 11849 A 1808 1808
7 Russia 11850 T 1808 1808
8 Russia 11851 G T 1808 1805 Met3862Ile
9 Russia 11852 T 1808 1808
10 Russia 11853 C 1808 1808
11 Russia 11854 A 1808 1808
12 Russia 11855 G 1808 1808
13 Russia 11856 A 1808 1808
14 Russia 11857 T C 1808 1807 Asp3864Asp
15 Russia 11858 G 1808 1808
16 Russia 11859 T C 1808 1805 Val3865Ala
17 Russia 11860 A T 1808 1807 Val3865Val
18 Russia 11861 A C 1808 1807 Lys3866Gln
19 Russia 11862 A 1808 1808
20 Russia 11863 G 1808 1808
21 Russia 11864 T 1808 1808
22 Russia 11865 G 1808 1808
23 Russia 11866 C T 1808 1807 Cys3867Cys
24 Russia 11867 A 1808 1808
25 Russia 11868 C 1808 1808
26 Russia 11869 A 1808 1808
27 Russia 11870 T 1808 1808
28 Russia 11871 C 1808 1808
29 Russia 11872 A 1808 1808
30 Russia 11873 G 1808 1808
31 Russia 11874 T 1808 1808
32 Russia 11875 A 1808 1808
33 Russia 11876 G 1808 1808
34 Russia 11877 T 1808 1808
35 Russia 11878 C T 1808 1806 Val3871Val
36 Russia 11879 T 1808 1808
37 Russia 11880 T 1808 1808
38 Russia 11881 A 1808 1808
39 Russia 11882 C 1808 1808
40 Russia 11883 T 1808 1808
41 Russia 11884 C 1808 1808
42 Russia 11885 T 1808 1808
43 Russia 11886 C 1808 1808
44 Russia 11887 A 1808 1808
45 Russia 11888 G 1808 1808
46 Russia 11889 T 1808 1808
47 Russia 11890 T 1808 1808
48 Russia 11891 T 1808 1808
49 Russia 11892 T 1808 1808
50 Russia 11893 G T 1808 1807 Leu3876Phe
51 Russia 11894 C 1808 1808
52 Russia 11895 A 1808 1808
53 Russia 11896 A 1808 1808
54 Russia 11897 C 1808 1808
55 Russia 11898 A 1808 1808
56 Russia 11899 A 1808 1808
57 Russia 11900 C 1808 1808
58 Russia 11901 T 1808 1808
59 Russia 11902 C 1808 1808
60 Russia 11903 A 1808 1808
61 Russia 11904 G 1808 1808
62 Russia 11905 A 1808 1808
63 Russia 11906 G 1808 1808
64 Russia 11907 T 1808 1808
65 Russia 11908 A 1808 1808
66 Russia 11909 G 1808 1808
67 Russia 11910 A 1808 1808
68 Russia 11911 A 1808 1808
69 Russia 11912 T 1808 1808
70 Russia 11913 C 1808 1808
71 Russia 11914 A 1808 1808
72 Russia 11915 T 1808 1808
73 Russia 11916 C T 1808 1797 Ser3884Leu
74 Russia 11917 A C 1808 1807 Ser3884Ser
75 Russia 11918 T 1808 1808
76 Russia 11919 C T 1808 1797 Ser3885Phe
77 Russia 11920 T 1808 1808
78 Russia 11921 A 1808 1808
79 Russia 11922 A 1808 1808
80 Russia 11923 A 1808 1808
81 Russia 11924 T 1808 1808
82 Russia 11925 T 1808 1808
83 Russia 11926 G 1808 1808
84 Russia 11927 T 1808 1808
85 Russia 11928 G 1808 1808
86 Russia 11929 G 1808 1808
87 Russia 11930 G 1808 1808
88 Russia 11931 C T 1808 1807 Ala3889Val
89 Russia 11932 T 1808 1808
90 Russia 11933 C 1808 1808
91 Russia 11934 A 1808 1808
92 Russia 11935 A 1808 1808
93 Russia 11936 T 1808 1808
94 Russia 11937 G 1808 1808
95 Russia 11938 T C 1808 1804 Cys3891Cys
96 Russia 11939 G A 1808 1807 Val3892Ile
97 Russia 11940 T 1808 1808
98 Russia 11941 C T 1808 1805 Val3892Val
99 Russia 11942 C 1808 1808
100 Russia 11943 A 1808 1808
101 Russia 11944 G 1808 1808
102 Russia 11945 T 1808 1808
103 Russia 11946 T 1808 1808
104 Russia 11947 A 1808 1808
105 Russia 11948 C 1808 1808
106 Russia 11949 A 1808 1808
107 Russia 11950 C T 1808 1807 His3895His
108 Russia 11951 A 1808 1808
109 Russia 11952 A 1808 1808
110 Russia 11953 T 1808 1808
111 Russia 11954 G 1808 1808
112 Russia 11955 A 1808 1808
113 Russia 11956 C T 1808 1805 Asp3897Asp
114 Russia 11957 A 1808 1808
115 Russia 11958 T 1808 1808
116 Russia 11959 T 1808 1808
117 Russia 11960 C T 1808 1807 Leu3899Phe
118 Russia 11961 T 1808 1808
119 Russia 11962 C 1808 1808
120 Russia 11963 T 1808 1808
121 Russia 11964 T 1808 1808
122 Russia 11965 A 1808 1808
123 Russia 11966 G 1808 1808
124 Russia 11967 C T 1808 1807 Ala3901Val
125 Russia 11968 T 1808 1808
126 Russia 11969 A 1808 1808
127 Russia 11970 A 1808 1808
128 Russia 11971 A 1808 1808
129 Russia 11972 G 1808 1808
130 Russia 11973 A 1808 1808
131 Russia 11974 T 1808 1808
132 Russia 11975 A 1808 1808
133 Russia 11976 C 1808 1808
134 Russia 11977 T 1808 1808
135 Russia 11978 A 1808 1808
136 Russia 11979 C 1808 1808
137 Russia 11980 T 1808 1808
138 Russia 11981 G 1808 1808
139 Russia 11982 A 1808 1808
140 Russia 11983 A 1808 1808
141 Russia 11984 G 1808 1808
142 Russia 11985 C 1808 1808
143 Russia 11986 C 1808 1808
144 Russia 11987 T 1808 1808
145 Russia 11988 T 1808 1808
146 Russia 11989 T 1808 1808
147 Russia 11990 G 1808 1808
148 Russia 11991 A 1808 1808
149 Russia 11992 A 1808 1808
150 Russia 11993 A 1808 1808
151 Russia 11994 A 1808 1808
152 Russia 11995 A 1808 1808
153 Russia 11996 A 1808 1808
154 Russia 11997 T 1808 1808
155 Russia 11998 G T 1808 1807 Met3911Ile
156 Russia 11999 G 1808 1808
157 Russia 12000 T 1808 1808
158 Russia 12001 T 1808 1808
159 Russia 12002 T 1808 1808
160 Russia 12003 C 1808 1808
161 Russia 12004 A 1808 1808
162 Russia 12005 C T 1808 1807 Leu3914Leu
163 Russia 12006 T 1808 1808
164 Russia 12007 A 1808 1808
165 Russia 12008 C T 1808 1800 Leu3915Phe
166 Russia 12009 T 1808 1808
167 Russia 12010 T 1808 1808
168 Russia 12011 T 1808 1808
169 Russia 12012 C 1808 1808
170 Russia 12013 T 1808 1808
171 Russia 12014 G 1808 1808
172 Russia 12015 T G 1808 1806 Val3917Gly
173 Russia 12016 T 1808 1808
174 Russia 12017 T 1808 1808
175 Russia 12018 T 1808 1808
176 Russia 12019 G 1808 1808
177 Russia 12020 C 1808 1808
178 Russia 12021 T 1808 1808
179 Russia 12022 T 1808 1808
180 Russia 12023 T 1808 1808
181 Russia 12024 C 1808 1808
182 Russia 12025 C T 1808 1797 Ser3920Ser
183 Russia 12026 A 1808 1808
184 Russia 12027 T 1808 1808
185 Russia 12028 G 1808 1808
186 Russia 12029 C 1808 1808
187 Russia 12030 A 1808 1808
188 Russia 12031 G A 1808 1807 Gln3922Gln
189 Russia 12032 G T 1808 1807 Gly3923Cys
190 Russia 12033 G 1808 1808
191 Russia 12034 T 1808 1808
192 Russia 12035 G 1808 1808
193 Russia 12036 C 1808 1808
194 Russia 12037 T 1808 1808
195 Russia 12038 G 1808 1808
196 Russia 12039 T 1808 1808
197 Russia 12040 A G 1808 1804 Val3925Val
198 Russia 12041 G 1808 1808
199 Russia 12042 A 1808 1808
200 Russia 12043 C T 1808 1807 Asp3926Asp
201 Russia 12044 A 1808 1808
202 Russia 12045 T 1808 1808
203 Russia 12046 A 1808 1808
204 Russia 12047 A 1808 1808
205 Russia 12048 A 1808 1808
206 Russia 12049 C T 1808 1806 Asn3928Asn
207 Russia 12050 A 1808 1808
208 Russia 12051 A 1808 1808
209 Russia 12052 G T 1808 1807 Lys3929Asn
210 Russia 12053 C T 1808 1806 Leu3930Phe
211 Russia 12054 T 1808 1808
212 Russia 12055 T 1808 1808
213 Russia 12056 T 1808 1808
214 Russia 12057 G 1808 1808
215 Russia 12058 T 1808 1808
216 Russia 12059 G 1808 1808
217 Russia 12060 A 1808 1808
218 Russia 12061 A C 1808 1806 Glu3932Asp
219 Russia 12062 G 1808 1808
220 Russia 12063 A 1808 1808
221 Russia 12064 A 1808 1808
222 Russia 12065 A 1808 1808
223 Russia 12066 T 1808 1808
224 Russia 12067 G T,A 1808 1806 Met3934Ile-p.Met3934Ile
225 Russia 12068 C T 1808 1806 Leu3935Leu
226 Russia 12069 T 1808 1808
227 Russia 12070 G T 1808 1807 Leu3935Leu
228 Russia 12071 G A 1808 1807 Asp3936Asn
229 Russia 12072 A G 1808 1806 Asp3936Gly
230 Russia 12073 C T 1808 1805 Asp3936Asp
231 Russia 12074 A 1808 1808
232 Russia 12075 A 1808 1808
233 Russia 12076 C T 1808 1800 Asn3937Asn
234 Russia 12077 A 1808 1808
235 Russia 12078 G 1808 1808
236 Russia 12079 G 1808 1808
237 Russia 12080 G 1808 1808
238 Russia 12081 C 1808 1808
239 Russia 12082 A G 1808 1807 Ala3939Ala
240 Russia 12083 A 1808 1808
241 Russia 12084 C T 1808 1806 Thr3940Ile
242 Russia 12085 C 1808 1808
243 Russia 12086 T 1808 1808
244 Russia 12087 T 1808 1808
245 Russia 12088 A 1808 1808
246 Russia 12089 C 1808 1808
247 Russia 12090 A 1808 1808
248 Russia 12091 A 1808 1808