National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9   1                                
D   15     1                              
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6               1                    
K   18                                    
L   45                                    
M   12                                    
N   9                       1            
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Romania 11843 T 382 382
1 Romania 11844 C 382 382
2 Romania 11845 T 382 382
3 Romania 11846 A 382 382
4 Romania 11847 A 382 382
5 Romania 11848 A 382 382
6 Romania 11849 A 382 382
7 Romania 11850 T 382 382
8 Romania 11851 G 382 382
9 Romania 11852 T 382 382
10 Romania 11853 C 382 382
11 Romania 11854 A 382 382
12 Romania 11855 G 382 382
13 Romania 11856 A 382 382
14 Romania 11857 T 382 382
15 Romania 11858 G 382 382
16 Romania 11859 T 382 382
17 Romania 11860 A 382 382
18 Romania 11861 A 382 382
19 Romania 11862 A 382 382
20 Romania 11863 G 382 382
21 Romania 11864 T 382 382
22 Romania 11865 G 382 382
23 Romania 11866 C T 382 370 Cys3867Cys
24 Romania 11867 A 382 382
25 Romania 11868 C 382 382
26 Romania 11869 A 382 382
27 Romania 11870 T 382 382
28 Romania 11871 C 382 382
29 Romania 11872 A 382 382
30 Romania 11873 G 382 382
31 Romania 11874 T 382 382
32 Romania 11875 A 382 382
33 Romania 11876 G 382 382
34 Romania 11877 T 382 382
35 Romania 11878 C 382 382
36 Romania 11879 T 382 382
37 Romania 11880 T 382 382
38 Romania 11881 A 382 382
39 Romania 11882 C 382 382
40 Romania 11883 T 382 382
41 Romania 11884 C 382 382
42 Romania 11885 T 382 382
43 Romania 11886 C 382 382
44 Romania 11887 A 382 382
45 Romania 11888 G 382 382
46 Romania 11889 T 382 382
47 Romania 11890 T 382 382
48 Romania 11891 T 382 382
49 Romania 11892 T 382 382
50 Romania 11893 G 382 382
51 Romania 11894 C 382 382
52 Romania 11895 A 382 382
53 Romania 11896 A 382 382
54 Romania 11897 C 382 382
55 Romania 11898 A 382 382
56 Romania 11899 A 382 382
57 Romania 11900 C 382 382
58 Romania 11901 T 382 382
59 Romania 11902 C 382 382
60 Romania 11903 A 382 382
61 Romania 11904 G 382 382
62 Romania 11905 A 382 382
63 Romania 11906 G 382 382
64 Romania 11907 T 382 382
65 Romania 11908 A 382 382
66 Romania 11909 G 382 382
67 Romania 11910 A 382 382
68 Romania 11911 A 382 382
69 Romania 11912 T 382 382
70 Romania 11913 C 382 382
71 Romania 11914 A 382 382
72 Romania 11915 T 382 382
73 Romania 11916 C 382 382
74 Romania 11917 A 382 382
75 Romania 11918 T 382 382
76 Romania 11919 C 382 382
77 Romania 11920 T 382 382
78 Romania 11921 A 382 382
79 Romania 11922 A 382 382
80 Romania 11923 A 382 382
81 Romania 11924 T 382 382
82 Romania 11925 T 382 382
83 Romania 11926 G 382 382
84 Romania 11927 T 382 382
85 Romania 11928 G 382 382
86 Romania 11929 G 382 382
87 Romania 11930 G 382 382
88 Romania 11931 C 382 382
89 Romania 11932 T 382 382
90 Romania 11933 C 382 382
91 Romania 11934 A 382 382
92 Romania 11935 A 382 382
93 Romania 11936 T 382 382
94 Romania 11937 G 382 382
95 Romania 11938 T 382 382
96 Romania 11939 G 382 382
97 Romania 11940 T 382 382
98 Romania 11941 C 382 382
99 Romania 11942 C 382 382
100 Romania 11943 A 382 382
101 Romania 11944 G 382 382
102 Romania 11945 T 382 382
103 Romania 11946 T 382 382
104 Romania 11947 A 382 382
105 Romania 11948 C 382 382
106 Romania 11949 A 382 382
107 Romania 11950 C 382 382
108 Romania 11951 A 382 382
109 Romania 11952 A 382 382
110 Romania 11953 T 382 382
111 Romania 11954 G 382 382
112 Romania 11955 A 382 382
113 Romania 11956 C 382 382
114 Romania 11957 A 382 382
115 Romania 11958 T 382 382
116 Romania 11959 T C 382 380 Ile3898Ile
117 Romania 11960 C 382 382
118 Romania 11961 T 382 382
119 Romania 11962 C 382 382
120 Romania 11963 T 382 382
121 Romania 11964 T 382 382
122 Romania 11965 A 382 382
123 Romania 11966 G 382 382
124 Romania 11967 C 382 382
125 Romania 11968 T 382 382
126 Romania 11969 A 382 382
127 Romania 11970 A 382 382
128 Romania 11971 A 382 382
129 Romania 11972 G 382 382
130 Romania 11973 A 382 382
131 Romania 11974 T 382 382
132 Romania 11975 A 382 382
133 Romania 11976 C 382 382
134 Romania 11977 T 382 382
135 Romania 11978 A 382 382
136 Romania 11979 C 382 382
137 Romania 11980 T 382 382
138 Romania 11981 G 382 382
139 Romania 11982 A 382 382
140 Romania 11983 A 382 382
141 Romania 11984 G 382 382
142 Romania 11985 C 382 382
143 Romania 11986 C 382 382
144 Romania 11987 T 382 382
145 Romania 11988 T 382 382
146 Romania 11989 T 382 382
147 Romania 11990 G 382 382
148 Romania 11991 A 382 382
149 Romania 11992 A 382 382
150 Romania 11993 A 382 382
151 Romania 11994 A 382 382
152 Romania 11995 A 382 382
153 Romania 11996 A 382 382
154 Romania 11997 T 382 382
155 Romania 11998 G 382 382
156 Romania 11999 G 382 382
157 Romania 12000 T 382 382
158 Romania 12001 T 382 382
159 Romania 12002 T 382 382
160 Romania 12003 C 382 382
161 Romania 12004 A 382 382
162 Romania 12005 C 382 382
163 Romania 12006 T 382 382
164 Romania 12007 A 382 382
165 Romania 12008 C 382 382
166 Romania 12009 T 382 382
167 Romania 12010 T 382 382
168 Romania 12011 T 382 382
169 Romania 12012 C 382 382
170 Romania 12013 T 382 382
171 Romania 12014 G 382 382
172 Romania 12015 T 382 382
173 Romania 12016 T 382 382
174 Romania 12017 T 382 382
175 Romania 12018 T 382 382
176 Romania 12019 G 382 382
177 Romania 12020 C 382 382
178 Romania 12021 T 382 382
179 Romania 12022 T 382 382
180 Romania 12023 T 382 382
181 Romania 12024 C 382 382
182 Romania 12025 C 382 382
183 Romania 12026 A 382 382
184 Romania 12027 T 382 382
185 Romania 12028 G 382 382
186 Romania 12029 C 382 382
187 Romania 12030 A 382 382
188 Romania 12031 G 382 382
189 Romania 12032 G 382 382
190 Romania 12033 G 382 382
191 Romania 12034 T 382 382
192 Romania 12035 G 382 382
193 Romania 12036 C 382 382
194 Romania 12037 T 382 382
195 Romania 12038 G 382 382
196 Romania 12039 T 382 382
197 Romania 12040 A 382 382
198 Romania 12041 G 382 382
199 Romania 12042 A 382 382
200 Romania 12043 C 382 382
201 Romania 12044 A 382 382
202 Romania 12045 T 382 382
203 Romania 12046 A 382 382
204 Romania 12047 A 382 382
205 Romania 12048 A 382 382
206 Romania 12049 C 382 382
207 Romania 12050 A 382 382
208 Romania 12051 A 382 382
209 Romania 12052 G 382 382
210 Romania 12053 C 382 382
211 Romania 12054 T 382 382
212 Romania 12055 T 382 382
213 Romania 12056 T 382 382
214 Romania 12057 G 382 382
215 Romania 12058 T 382 382
216 Romania 12059 G 382 382
217 Romania 12060 A 382 382
218 Romania 12061 A 382 382
219 Romania 12062 G 382 382
220 Romania 12063 A 382 382
221 Romania 12064 A 382 382
222 Romania 12065 A 382 382
223 Romania 12066 T 382 382
224 Romania 12067 G 382 382
225 Romania 12068 C 382 382
226 Romania 12069 T 382 382
227 Romania 12070 G 382 382
228 Romania 12071 G 382 382
229 Romania 12072 A 382 382
230 Romania 12073 C T 382 380 Asp3936Asp
231 Romania 12074 A 382 382
232 Romania 12075 A 382 382
233 Romania 12076 C T 382 380 Asn3937Asn
234 Romania 12077 A 382 382
235 Romania 12078 G 382 382
236 Romania 12079 G 382 382
237 Romania 12080 G 382 382
238 Romania 12081 C 382 382
239 Romania 12082 A 382 382
240 Romania 12083 A 382 382
241 Romania 12084 C 382 382
242 Romania 12085 C 382 382
243 Romania 12086 T 382 382
244 Romania 12087 T 382 382
245 Romania 12088 A 382 382
246 Romania 12089 C 382 382
247 Romania 12090 A 382 382
248 Romania 12091 A 382 382