National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Qatar 11843 T 16 16
1 Qatar 11844 C 16 16
2 Qatar 11845 T 16 16
3 Qatar 11846 A 16 16
4 Qatar 11847 A 16 16
5 Qatar 11848 A 16 16
6 Qatar 11849 A 16 16
7 Qatar 11850 T 16 16
8 Qatar 11851 G 16 15
9 Qatar 11852 T 16 16
10 Qatar 11853 C 16 16
11 Qatar 11854 A 16 16
12 Qatar 11855 G 16 16
13 Qatar 11856 A 16 16
14 Qatar 11857 T 16 16
15 Qatar 11858 G 16 16
16 Qatar 11859 T 16 16
17 Qatar 11860 A 16 16
18 Qatar 11861 A 16 16
19 Qatar 11862 A 16 16
20 Qatar 11863 G 16 16
21 Qatar 11864 T 16 16
22 Qatar 11865 G 16 16
23 Qatar 11866 C 16 16
24 Qatar 11867 A 16 16
25 Qatar 11868 C 16 16
26 Qatar 11869 A 16 16
27 Qatar 11870 T 16 16
28 Qatar 11871 C 16 16
29 Qatar 11872 A 16 16
30 Qatar 11873 G 16 16
31 Qatar 11874 T 16 16
32 Qatar 11875 A 16 16
33 Qatar 11876 G 16 16
34 Qatar 11877 T 16 16
35 Qatar 11878 C 16 16
36 Qatar 11879 T 16 16
37 Qatar 11880 T 16 16
38 Qatar 11881 A 16 16
39 Qatar 11882 C 16 16
40 Qatar 11883 T 16 16
41 Qatar 11884 C 16 16
42 Qatar 11885 T 16 16
43 Qatar 11886 C 16 16
44 Qatar 11887 A 16 16
45 Qatar 11888 G 16 16
46 Qatar 11889 T 16 16
47 Qatar 11890 T 16 16
48 Qatar 11891 T 16 16
49 Qatar 11892 T 16 16
50 Qatar 11893 G 16 16
51 Qatar 11894 C 16 16
52 Qatar 11895 A 16 16
53 Qatar 11896 A 16 16
54 Qatar 11897 C 16 16
55 Qatar 11898 A 16 16
56 Qatar 11899 A 16 16
57 Qatar 11900 C 16 16
58 Qatar 11901 T 16 16
59 Qatar 11902 C 16 16
60 Qatar 11903 A 16 16
61 Qatar 11904 G 16 16
62 Qatar 11905 A 16 16
63 Qatar 11906 G 16 16
64 Qatar 11907 T 16 16
65 Qatar 11908 A 16 16
66 Qatar 11909 G 16 16
67 Qatar 11910 A 16 16
68 Qatar 11911 A 16 16
69 Qatar 11912 T 16 16
70 Qatar 11913 C 16 16
71 Qatar 11914 A 16 16
72 Qatar 11915 T 16 16
73 Qatar 11916 C 16 16
74 Qatar 11917 A 16 16
75 Qatar 11918 T 16 16
76 Qatar 11919 C 16 16
77 Qatar 11920 T 16 16
78 Qatar 11921 A 16 16
79 Qatar 11922 A 16 16
80 Qatar 11923 A 16 16
81 Qatar 11924 T 16 16
82 Qatar 11925 T 16 16
83 Qatar 11926 G 16 16
84 Qatar 11927 T 16 16
85 Qatar 11928 G 16 16
86 Qatar 11929 G 16 16
87 Qatar 11930 G 16 16
88 Qatar 11931 C 16 16
89 Qatar 11932 T 16 16
90 Qatar 11933 C 16 16
91 Qatar 11934 A 16 16
92 Qatar 11935 A 16 16
93 Qatar 11936 T 16 16
94 Qatar 11937 G 16 16
95 Qatar 11938 T 16 16
96 Qatar 11939 G 16 16
97 Qatar 11940 T 16 16
98 Qatar 11941 C 16 16
99 Qatar 11942 C 16 16
100 Qatar 11943 A 16 16
101 Qatar 11944 G 16 16
102 Qatar 11945 T 16 16
103 Qatar 11946 T 16 16
104 Qatar 11947 A 16 16
105 Qatar 11948 C 16 16
106 Qatar 11949 A 16 16
107 Qatar 11950 C 16 16
108 Qatar 11951 A 16 16
109 Qatar 11952 A 16 16
110 Qatar 11953 T 16 16
111 Qatar 11954 G 16 16
112 Qatar 11955 A 16 16
113 Qatar 11956 C 16 16
114 Qatar 11957 A 16 16
115 Qatar 11958 T 16 16
116 Qatar 11959 T 16 16
117 Qatar 11960 C 16 16
118 Qatar 11961 T 16 16
119 Qatar 11962 C 16 16
120 Qatar 11963 T 16 16
121 Qatar 11964 T 16 16
122 Qatar 11965 A 16 16
123 Qatar 11966 G 16 16
124 Qatar 11967 C 16 16
125 Qatar 11968 T 16 16
126 Qatar 11969 A 16 16
127 Qatar 11970 A 16 16
128 Qatar 11971 A 16 16
129 Qatar 11972 G 16 16
130 Qatar 11973 A 16 16
131 Qatar 11974 T 16 16
132 Qatar 11975 A 16 16
133 Qatar 11976 C 16 16
134 Qatar 11977 T 16 16
135 Qatar 11978 A 16 16
136 Qatar 11979 C 16 16
137 Qatar 11980 T 16 16
138 Qatar 11981 G 16 16
139 Qatar 11982 A 16 16
140 Qatar 11983 A 16 16
141 Qatar 11984 G 16 16
142 Qatar 11985 C 16 16
143 Qatar 11986 C 16 16
144 Qatar 11987 T 16 16
145 Qatar 11988 T 16 16
146 Qatar 11989 T 16 16
147 Qatar 11990 G 16 16
148 Qatar 11991 A 16 16
149 Qatar 11992 A 16 16
150 Qatar 11993 A 16 16
151 Qatar 11994 A 16 16
152 Qatar 11995 A 16 16
153 Qatar 11996 A 16 16
154 Qatar 11997 T 16 16
155 Qatar 11998 G 16 16
156 Qatar 11999 G 16 16
157 Qatar 12000 T 16 16
158 Qatar 12001 T 16 16
159 Qatar 12002 T 16 16
160 Qatar 12003 C 16 16
161 Qatar 12004 A 16 16
162 Qatar 12005 C 16 16
163 Qatar 12006 T 16 16
164 Qatar 12007 A 16 16
165 Qatar 12008 C 16 16
166 Qatar 12009 T 16 16
167 Qatar 12010 T 16 16
168 Qatar 12011 T 16 16
169 Qatar 12012 C 16 16
170 Qatar 12013 T 16 16
171 Qatar 12014 G 16 16
172 Qatar 12015 T 16 16
173 Qatar 12016 T 16 16
174 Qatar 12017 T 16 16
175 Qatar 12018 T 16 16
176 Qatar 12019 G 16 16
177 Qatar 12020 C 16 16
178 Qatar 12021 T 16 16
179 Qatar 12022 T 16 16
180 Qatar 12023 T 16 16
181 Qatar 12024 C 16 16
182 Qatar 12025 C 16 16
183 Qatar 12026 A 16 16
184 Qatar 12027 T 16 16
185 Qatar 12028 G 16 16
186 Qatar 12029 C 16 16
187 Qatar 12030 A 16 16
188 Qatar 12031 G 16 16
189 Qatar 12032 G 16 16
190 Qatar 12033 G 16 16
191 Qatar 12034 T 16 16
192 Qatar 12035 G 16 16
193 Qatar 12036 C 16 16
194 Qatar 12037 T 16 16
195 Qatar 12038 G 16 16
196 Qatar 12039 T 16 16
197 Qatar 12040 A 16 16
198 Qatar 12041 G 16 16
199 Qatar 12042 A 16 16
200 Qatar 12043 C 16 16
201 Qatar 12044 A 16 16
202 Qatar 12045 T 16 16
203 Qatar 12046 A 16 16
204 Qatar 12047 A 16 16
205 Qatar 12048 A 16 16
206 Qatar 12049 C 16 16
207 Qatar 12050 A 16 16
208 Qatar 12051 A 16 16
209 Qatar 12052 G 16 16
210 Qatar 12053 C 16 16
211 Qatar 12054 T 16 16
212 Qatar 12055 T 16 16
213 Qatar 12056 T 16 16
214 Qatar 12057 G 16 16
215 Qatar 12058 T 16 16
216 Qatar 12059 G 16 16
217 Qatar 12060 A 16 16
218 Qatar 12061 A 16 16
219 Qatar 12062 G 16 16
220 Qatar 12063 A 16 16
221 Qatar 12064 A 16 16
222 Qatar 12065 A 16 16
223 Qatar 12066 T 16 16
224 Qatar 12067 G 16 16
225 Qatar 12068 C 16 16
226 Qatar 12069 T 16 16
227 Qatar 12070 G 16 16
228 Qatar 12071 G 16 16
229 Qatar 12072 A 16 16
230 Qatar 12073 C 16 16
231 Qatar 12074 A 16 16
232 Qatar 12075 A 16 16
233 Qatar 12076 C 16 16
234 Qatar 12077 A 16 16
235 Qatar 12078 G 16 16
236 Qatar 12079 G 16 16
237 Qatar 12080 G 16 16
238 Qatar 12081 C 16 16
239 Qatar 12082 A 16 16
240 Qatar 12083 A 16 16
241 Qatar 12084 C 16 16
242 Qatar 12085 C 16 16
243 Qatar 12086 T 16 16
244 Qatar 12087 T 16 16
245 Qatar 12088 A 16 16
246 Qatar 12089 C 16 16
247 Qatar 12090 A 16 16
248 Qatar 12091 A 16 16