National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15 2                                  
C   9                                    
D   15     2                              
E   15     1                              
F   3                                    
G   3                           1        
H   3                                    
I   6                                    
K   18                           1        
L   45         1         2                
M   12               2                    
N   9                                    
Q   18             2                      
R   6           1                        
S   30         1         1         1      
T   12                                    
V   27               1                 2  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Portugal 11843 T 2422 2422
1 Portugal 11844 C 2422 2422
2 Portugal 11845 T 2422 2422
3 Portugal 11846 A 2422 2422
4 Portugal 11847 A 2422 2422
5 Portugal 11848 A 2422 2422
6 Portugal 11849 A 2422 2422
7 Portugal 11850 T 2422 2422
8 Portugal 11851 G T 2422 2402 Met3862Ile
9 Portugal 11852 T 2422 2422
10 Portugal 11853 C 2422 2422
11 Portugal 11854 A 2422 2422
12 Portugal 11855 G 2422 2422
13 Portugal 11856 A 2422 2422
14 Portugal 11857 T 2422 2422
15 Portugal 11858 G 2422 2422
16 Portugal 11859 T 2422 2422
17 Portugal 11860 A 2422 2422
18 Portugal 11861 A 2422 2422
19 Portugal 11862 A 2422 2422
20 Portugal 11863 G 2422 2422
21 Portugal 11864 T 2422 2422
22 Portugal 11865 G 2422 2422
23 Portugal 11866 C 2422 2422
24 Portugal 11867 A 2422 2422
25 Portugal 11868 C 2422 2422
26 Portugal 11869 A 2422 2422
27 Portugal 11870 T 2422 2422
28 Portugal 11871 C 2422 2422
29 Portugal 11872 A 2422 2422
30 Portugal 11873 G 2422 2422
31 Portugal 11874 T 2422 2422
32 Portugal 11875 A 2422 2422
33 Portugal 11876 G 2422 2422
34 Portugal 11877 T 2422 2422
35 Portugal 11878 C 2422 2422
36 Portugal 11879 T 2422 2422
37 Portugal 11880 T 2422 2422
38 Portugal 11881 A 2422 2422
39 Portugal 11882 C 2422 2422
40 Portugal 11883 T 2422 2422
41 Portugal 11884 C 2422 2422
42 Portugal 11885 T 2422 2422
43 Portugal 11886 C 2422 2422
44 Portugal 11887 A 2422 2422
45 Portugal 11888 G 2422 2422
46 Portugal 11889 T 2422 2422
47 Portugal 11890 T C 2422 2421 Val3875Val
48 Portugal 11891 T 2422 2422
49 Portugal 11892 T 2422 2422
50 Portugal 11893 G 2422 2422
51 Portugal 11894 C 2422 2422
52 Portugal 11895 A 2422 2422
53 Portugal 11896 A 2422 2422
54 Portugal 11897 C 2422 2422
55 Portugal 11898 A 2422 2422
56 Portugal 11899 A 2422 2422
57 Portugal 11900 C 2422 2422
58 Portugal 11901 T 2422 2422
59 Portugal 11902 C 2422 2422
60 Portugal 11903 A 2422 2422
61 Portugal 11904 G 2422 2422
62 Portugal 11905 A 2422 2422
63 Portugal 11906 G 2422 2422
64 Portugal 11907 T 2422 2422
65 Portugal 11908 A 2422 2422
66 Portugal 11909 G 2422 2422
67 Portugal 11910 A 2422 2422
68 Portugal 11911 A 2422 2422
69 Portugal 11912 T 2422 2422
70 Portugal 11913 C 2422 2422
71 Portugal 11914 A 2422 2422
72 Portugal 11915 T 2422 2422
73 Portugal 11916 C T 2422 2421 Ser3884Leu
74 Portugal 11917 A 2422 2422
75 Portugal 11918 T 2422 2422
76 Portugal 11919 C T 2422 2420 Ser3885Phe
77 Portugal 11920 T 2422 2422
78 Portugal 11921 A 2422 2422
79 Portugal 11922 A 2422 2422
80 Portugal 11923 A 2422 2422
81 Portugal 11924 T 2422 2422
82 Portugal 11925 T 2422 2422
83 Portugal 11926 G 2422 2422
84 Portugal 11927 T 2422 2422
85 Portugal 11928 G 2422 2422
86 Portugal 11929 G 2422 2422
87 Portugal 11930 G 2422 2422
88 Portugal 11931 C 2422 2422
89 Portugal 11932 T 2422 2422
90 Portugal 11933 C 2422 2422
91 Portugal 11934 A 2422 2422
92 Portugal 11935 A 2422 2422
93 Portugal 11936 T 2422 2422
94 Portugal 11937 G 2422 2422
95 Portugal 11938 T 2422 2422
96 Portugal 11939 G 2422 2422
97 Portugal 11940 T 2422 2422
98 Portugal 11941 C 2422 2422
99 Portugal 11942 C 2422 2422
100 Portugal 11943 A 2421 2421
101 Portugal 11944 G T 2421 2420 Gln3893His
102 Portugal 11945 T 2421 2421
103 Portugal 11946 T 2421 2421
104 Portugal 11947 A 2421 2420
105 Portugal 11948 C 2421 2421
106 Portugal 11949 A 2421 2420
107 Portugal 11950 C 2421 2420
108 Portugal 11951 A 2421 2420
109 Portugal 11952 A 2421 2420
110 Portugal 11953 T 2421 2420
111 Portugal 11954 G 2421 2420
112 Portugal 11955 A 2421 2420
113 Portugal 11956 C T 2421 2417 Asp3897Asp
114 Portugal 11957 A 2421 2421
115 Portugal 11958 T 2421 2420
116 Portugal 11959 T 2421 2421
117 Portugal 11960 C 2421 2420
118 Portugal 11961 T 2421 2420
119 Portugal 11962 C G 2421 2416 Leu3899Leu
120 Portugal 11963 T 2421 2421
121 Portugal 11964 T 2421 2421
122 Portugal 11965 A 2421 2421
123 Portugal 11966 G 2421 2421
124 Portugal 11967 C 2421 2421
125 Portugal 11968 T 2421 2421
126 Portugal 11969 A 2421 2421
127 Portugal 11970 A G 2421 2420 Lys3902Arg
128 Portugal 11971 A 2421 2421
129 Portugal 11972 G 2421 2421
130 Portugal 11973 A 2421 2421
131 Portugal 11974 T 2421 2421
132 Portugal 11975 A 2421 2421
133 Portugal 11976 C 2421 2421
134 Portugal 11977 T 2421 2421
135 Portugal 11978 A 2421 2421
136 Portugal 11979 C 2421 2421
137 Portugal 11980 T 2421 2421
138 Portugal 11981 G 2421 2421
139 Portugal 11982 A 2421 2421
140 Portugal 11983 A C 2421 2420 Glu3906Asp
141 Portugal 11984 G 2421 2421
142 Portugal 11985 C 2421 2421
143 Portugal 11986 C T,A 2421 2419 Ala3907Ala-p.Ala3907Ala
144 Portugal 11987 T 2421 2421
145 Portugal 11988 T 2421 2421
146 Portugal 11989 T 2421 2421
147 Portugal 11990 G 2421 2421
148 Portugal 11991 A 2421 2421
149 Portugal 11992 A 2421 2421
150 Portugal 11993 A 2421 2421
151 Portugal 11994 A 2421 2421
152 Portugal 11995 A 2421 2421
153 Portugal 11996 A 2421 2421
154 Portugal 11997 T 2421 2421
155 Portugal 11998 G 2421 2421
156 Portugal 11999 G 2421 2421
157 Portugal 12000 T 2421 2421
158 Portugal 12001 T 2421 2421
159 Portugal 12002 T 2421 2421
160 Portugal 12003 C 2421 2421
161 Portugal 12004 A 2421 2421
162 Portugal 12005 C 2421 2421
163 Portugal 12006 T 2421 2421
164 Portugal 12007 A 2421 2421
165 Portugal 12008 C 2421 2421
166 Portugal 12009 T 2421 2421
167 Portugal 12010 T 2421 2421
168 Portugal 12011 T 2421 2421
169 Portugal 12012 C 2421 2421
170 Portugal 12013 T 2421 2421
171 Portugal 12014 G A 2421 2420 Val3917Ile
172 Portugal 12015 T 2421 2421
173 Portugal 12016 T 2421 2421
174 Portugal 12017 T 2421 2421
175 Portugal 12018 T 2421 2421
176 Portugal 12019 G 2421 2421
177 Portugal 12020 C 2421 2421
178 Portugal 12021 T 2421 2421
179 Portugal 12022 T 2421 2421
180 Portugal 12023 T 2421 2421
181 Portugal 12024 C 2421 2421
182 Portugal 12025 C T 2421 2419 Ser3920Ser
183 Portugal 12026 A 2421 2421
184 Portugal 12027 T 2421 2421
185 Portugal 12028 G 2421 2421
186 Portugal 12029 C 2421 2421
187 Portugal 12030 A 2421 2421
188 Portugal 12031 G T 2421 2420 Gln3922His
189 Portugal 12032 G C 2421 2420 Gly3923Arg
190 Portugal 12033 G 2421 2421
191 Portugal 12034 T 2421 2421
192 Portugal 12035 G 2421 2421
193 Portugal 12036 C 2421 2421
194 Portugal 12037 T 2421 2421
195 Portugal 12038 G 2421 2421
196 Portugal 12039 T 2421 2421
197 Portugal 12040 A G 2421 2418 Val3925Val
198 Portugal 12041 G 2421 2421
199 Portugal 12042 A 2421 2421
200 Portugal 12043 C T 2421 2419 Asp3926Asp
201 Portugal 12044 A 2421 2421
202 Portugal 12045 T 2421 2421
203 Portugal 12046 A 2421 2421
204 Portugal 12047 A 2421 2421
205 Portugal 12048 A 2421 2421
206 Portugal 12049 C 2421 2421
207 Portugal 12050 A 2421 2421
208 Portugal 12051 A 2421 2421
209 Portugal 12052 G 2421 2421
210 Portugal 12053 C T 2421 2418 Leu3930Phe
211 Portugal 12054 T 2421 2421
212 Portugal 12055 T 2421 2421
213 Portugal 12056 T 2421 2421
214 Portugal 12057 G 2421 2421
215 Portugal 12058 T 2421 2421
216 Portugal 12059 G 2421 2421
217 Portugal 12060 A 2421 2421
218 Portugal 12061 A 2421 2421
219 Portugal 12062 G 2421 2421
220 Portugal 12063 A 2421 2421
221 Portugal 12064 A 2421 2421
222 Portugal 12065 A 2421 2421
223 Portugal 12066 T 2421 2421
224 Portugal 12067 G T 2421 2415 Met3934Ile
225 Portugal 12068 C 2421 2421
226 Portugal 12069 T 2421 2421
227 Portugal 12070 G T 2421 2420 Leu3935Leu
228 Portugal 12071 G 2421 2421
229 Portugal 12072 A 2421 2421
230 Portugal 12073 C 2421 2421
231 Portugal 12074 A 2421 2421
232 Portugal 12075 A 2421 2421
233 Portugal 12076 C 2421 2421
234 Portugal 12077 A G 2421 2420 Arg3938Gly
235 Portugal 12078 G 2421 2421
236 Portugal 12079 G 2421 2421
237 Portugal 12080 G 2421 2421
238 Portugal 12081 C 2421 2421
239 Portugal 12082 A 2421 2421
240 Portugal 12083 A 2421 2421
241 Portugal 12084 C 2421 2421
242 Portugal 12085 C 2421 2421
243 Portugal 12086 T 2421 2421
244 Portugal 12087 T 2421 2421
245 Portugal 12088 A 2421 2421
246 Portugal 12089 C 2421 2421
247 Portugal 12090 A 2421 2421
248 Portugal 12091 A 2421 2421