National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                               1    
C   9                                    
D   15     2                              
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                 1                  
L   45         1         2                
M   12               1                    
N   9                                    
Q   18                                    
R   6                                    
S   30         1                   1      
T   12               1               2    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Poland 11843 T 434 434
1 Poland 11844 C 434 434
2 Poland 11845 T 434 434
3 Poland 11846 A 434 434
4 Poland 11847 A 434 434
5 Poland 11848 A 434 434
6 Poland 11849 A 434 434
7 Poland 11850 T 434 434
8 Poland 11851 G 434 434
9 Poland 11852 T 434 434
10 Poland 11853 C 434 434
11 Poland 11854 A 434 434
12 Poland 11855 G 434 434
13 Poland 11856 A 434 434
14 Poland 11857 T 434 434
15 Poland 11858 G 434 434
16 Poland 11859 T 434 434
17 Poland 11860 A 434 434
18 Poland 11861 A 434 434
19 Poland 11862 A 434 434
20 Poland 11863 G 434 434
21 Poland 11864 T 434 434
22 Poland 11865 G 434 434
23 Poland 11866 C 434 434
24 Poland 11867 A 434 434
25 Poland 11868 C 434 434
26 Poland 11869 A 434 434
27 Poland 11870 T 434 434
28 Poland 11871 C 434 434
29 Poland 11872 A 434 434
30 Poland 11873 G 434 434
31 Poland 11874 T 434 434
32 Poland 11875 A 434 434
33 Poland 11876 G 434 434
34 Poland 11877 T 434 434
35 Poland 11878 C 434 434
36 Poland 11879 T 434 434
37 Poland 11880 T 434 434
38 Poland 11881 A 434 434
39 Poland 11882 C 434 434
40 Poland 11883 T 434 434
41 Poland 11884 C 434 434
42 Poland 11885 T 434 434
43 Poland 11886 C 434 434
44 Poland 11887 A 434 434
45 Poland 11888 G 434 434
46 Poland 11889 T 434 434
47 Poland 11890 T 434 434
48 Poland 11891 T 434 434
49 Poland 11892 T 434 434
50 Poland 11893 G 434 434
51 Poland 11894 C 434 434
52 Poland 11895 A 434 434
53 Poland 11896 A 434 434
54 Poland 11897 C 434 434
55 Poland 11898 A 434 434
56 Poland 11899 A 434 434
57 Poland 11900 C 434 434
58 Poland 11901 T 434 434
59 Poland 11902 C 434 434
60 Poland 11903 A 434 434
61 Poland 11904 G 434 434
62 Poland 11905 A 434 434
63 Poland 11906 G 434 434
64 Poland 11907 T 434 434
65 Poland 11908 A 434 434
66 Poland 11909 G 434 434
67 Poland 11910 A 434 434
68 Poland 11911 A 434 434
69 Poland 11912 T 434 434
70 Poland 11913 C 434 434
71 Poland 11914 A 434 434
72 Poland 11915 T 434 434
73 Poland 11916 C 434 434
74 Poland 11917 A 434 434
75 Poland 11918 T 434 434
76 Poland 11919 C T 434 433 Ser3885Phe
77 Poland 11920 T 434 434
78 Poland 11921 A 434 434
79 Poland 11922 A 434 434
80 Poland 11923 A 434 434
81 Poland 11924 T 434 434
82 Poland 11925 T 434 434
83 Poland 11926 G 434 434
84 Poland 11927 T 434 434
85 Poland 11928 G 434 434
86 Poland 11929 G 434 434
87 Poland 11930 G A 434 433 Ala3889Thr
88 Poland 11931 C 434 434
89 Poland 11932 T 434 434
90 Poland 11933 C 434 434
91 Poland 11934 A 434 434
92 Poland 11935 A 434 434
93 Poland 11936 T 434 434
94 Poland 11937 G 434 434
95 Poland 11938 T 434 434
96 Poland 11939 G 434 434
97 Poland 11940 T 434 434
98 Poland 11941 C 434 434
99 Poland 11942 C 434 434
100 Poland 11943 A 434 434
101 Poland 11944 G 434 434
102 Poland 11945 T 434 434
103 Poland 11946 T 434 434
104 Poland 11947 A 434 434
105 Poland 11948 C 434 434
106 Poland 11949 A 434 434
107 Poland 11950 C 434 434
108 Poland 11951 A 434 434
109 Poland 11952 A 434 434
110 Poland 11953 T 434 434
111 Poland 11954 G 434 434
112 Poland 11955 A 434 434
113 Poland 11956 C T 434 432 Asp3897Asp
114 Poland 11957 A 434 434
115 Poland 11958 T 434 434
116 Poland 11959 T 434 434
117 Poland 11960 C 434 434
118 Poland 11961 T 434 434
119 Poland 11962 C T 434 433 Leu3899Leu
120 Poland 11963 T 434 434
121 Poland 11964 T 434 434
122 Poland 11965 A 434 434
123 Poland 11966 G 434 434
124 Poland 11967 C 434 434
125 Poland 11968 T 434 434
126 Poland 11969 A 434 434
127 Poland 11970 A 434 434
128 Poland 11971 A 434 434
129 Poland 11972 G 434 434
130 Poland 11973 A 434 434
131 Poland 11974 T 434 434
132 Poland 11975 A 434 434
133 Poland 11976 C 434 434
134 Poland 11977 T 434 434
135 Poland 11978 A 434 434
136 Poland 11979 C 434 434
137 Poland 11980 T 434 434
138 Poland 11981 G 434 434
139 Poland 11982 A 434 434
140 Poland 11983 A 434 434
141 Poland 11984 G 434 434
142 Poland 11985 C 434 434
143 Poland 11986 C 434 434
144 Poland 11987 T 434 434
145 Poland 11988 T 434 434
146 Poland 11989 T 434 434
147 Poland 11990 G 434 434
148 Poland 11991 A 434 434
149 Poland 11992 A 434 434
150 Poland 11993 A 434 434
151 Poland 11994 A 434 434
152 Poland 11995 A 434 434
153 Poland 11996 A 434 434
154 Poland 11997 T 434 434
155 Poland 11998 G 434 434
156 Poland 11999 G 434 434
157 Poland 12000 T 434 434
158 Poland 12001 T 434 434
159 Poland 12002 T 434 434
160 Poland 12003 C 434 434
161 Poland 12004 A 434 434
162 Poland 12005 C 434 434
163 Poland 12006 T 434 434
164 Poland 12007 A 434 434
165 Poland 12008 C 434 434
166 Poland 12009 T 434 434
167 Poland 12010 T 434 434
168 Poland 12011 T 434 434
169 Poland 12012 C 434 434
170 Poland 12013 T 434 434
171 Poland 12014 G 434 434
172 Poland 12015 T 434 434
173 Poland 12016 T 434 434
174 Poland 12017 T 434 434
175 Poland 12018 T 434 434
176 Poland 12019 G 434 434
177 Poland 12020 C 434 434
178 Poland 12021 T 434 434
179 Poland 12022 T 434 434
180 Poland 12023 T 434 434
181 Poland 12024 C 434 434
182 Poland 12025 C T 434 433 Ser3920Ser
183 Poland 12026 A 434 434
184 Poland 12027 T 434 434
185 Poland 12028 G 434 434
186 Poland 12029 C 434 434
187 Poland 12030 A 434 434
188 Poland 12031 G 434 434
189 Poland 12032 G 434 434
190 Poland 12033 G 434 434
191 Poland 12034 T 434 434
192 Poland 12035 G 434 434
193 Poland 12036 C 434 434
194 Poland 12037 T 434 434
195 Poland 12038 G 434 434
196 Poland 12039 T 434 434
197 Poland 12040 A 434 434
198 Poland 12041 G 434 434
199 Poland 12042 A 434 434
200 Poland 12043 C 434 434
201 Poland 12044 A 434 434
202 Poland 12045 T 434 434
203 Poland 12046 A 434 434
204 Poland 12047 A 434 434
205 Poland 12048 A 434 434
206 Poland 12049 C 434 434
207 Poland 12050 A 434 434
208 Poland 12051 A 434 434
209 Poland 12052 G A 434 433 Lys3929Lys
210 Poland 12053 C T 434 431 Leu3930Phe
211 Poland 12054 T 434 434
212 Poland 12055 T 434 434
213 Poland 12056 T 434 434
214 Poland 12057 G 434 434
215 Poland 12058 T 434 434
216 Poland 12059 G 434 434
217 Poland 12060 A 434 434
218 Poland 12061 A 434 434
219 Poland 12062 G 434 434
220 Poland 12063 A 434 434
221 Poland 12064 A 434 434
222 Poland 12065 A 434 434
223 Poland 12066 T 434 434
224 Poland 12067 G T 434 433 Met3934Ile
225 Poland 12068 C 434 434
226 Poland 12069 T 434 434
227 Poland 12070 G T 434 431 Leu3935Leu
228 Poland 12071 G 434 434
229 Poland 12072 A 434 434
230 Poland 12073 C T 434 433 Asp3936Asp
231 Poland 12074 A 434 434
232 Poland 12075 A 434 434
233 Poland 12076 C 434 434
234 Poland 12077 A 434 434
235 Poland 12078 G 434 434
236 Poland 12079 G 434 434
237 Poland 12080 G 434 434
238 Poland 12081 C 434 434
239 Poland 12082 A 434 434
240 Poland 12083 A 434 434
241 Poland 12084 C T 434 433 Thr3940Ile
242 Poland 12085 C T,A 434 432 Thr3940Thr-p.Thr3940Thr
243 Poland 12086 T 434 434
244 Poland 12087 T 434 434
245 Poland 12088 A 434 434
246 Poland 12089 C 434 434
247 Poland 12090 A 434 434
248 Poland 12091 A 434 434