National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45         1                          
M   12                                    
N   9                       1            
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Philippines 11843 T 37 37
1 Philippines 11844 C 37 37
2 Philippines 11845 T 37 37
3 Philippines 11846 A 37 37
4 Philippines 11847 A 37 37
5 Philippines 11848 A 37 37
6 Philippines 11849 A 37 37
7 Philippines 11850 T 37 37
8 Philippines 11851 G 37 37
9 Philippines 11852 T 37 37
10 Philippines 11853 C 37 37
11 Philippines 11854 A 37 37
12 Philippines 11855 G 37 37
13 Philippines 11856 A 37 37
14 Philippines 11857 T 37 37
15 Philippines 11858 G 37 37
16 Philippines 11859 T 37 37
17 Philippines 11860 A 37 37
18 Philippines 11861 A 37 37
19 Philippines 11862 A 37 37
20 Philippines 11863 G 37 37
21 Philippines 11864 T 37 37
22 Philippines 11865 G 37 37
23 Philippines 11866 C 37 37
24 Philippines 11867 A 37 37
25 Philippines 11868 C 37 37
26 Philippines 11869 A 37 37
27 Philippines 11870 T 37 37
28 Philippines 11871 C 37 37
29 Philippines 11872 A 37 37
30 Philippines 11873 G 37 37
31 Philippines 11874 T 37 37
32 Philippines 11875 A 37 37
33 Philippines 11876 G 37 37
34 Philippines 11877 T 37 37
35 Philippines 11878 C 37 37
36 Philippines 11879 T 37 37
37 Philippines 11880 T 37 37
38 Philippines 11881 A 37 37
39 Philippines 11882 C 37 37
40 Philippines 11883 T 37 37
41 Philippines 11884 C 37 37
42 Philippines 11885 T 37 37
43 Philippines 11886 C 37 37
44 Philippines 11887 A 37 37
45 Philippines 11888 G 37 37
46 Philippines 11889 T 37 37
47 Philippines 11890 T 38 38
48 Philippines 11891 T 38 38
49 Philippines 11892 T 38 38
50 Philippines 11893 G 38 38
51 Philippines 11894 C 38 38
52 Philippines 11895 A 38 38
53 Philippines 11896 A 38 38
54 Philippines 11897 C 38 38
55 Philippines 11898 A 38 38
56 Philippines 11899 A 38 38
57 Philippines 11900 C 38 38
58 Philippines 11901 T 38 38
59 Philippines 11902 C 38 38
60 Philippines 11903 A 38 38
61 Philippines 11904 G 38 38
62 Philippines 11905 A 38 38
63 Philippines 11906 G 38 38
64 Philippines 11907 T 38 38
65 Philippines 11908 A 38 38
66 Philippines 11909 G 38 38
67 Philippines 11910 A 38 38
68 Philippines 11911 A 38 38
69 Philippines 11912 T 38 38
70 Philippines 11913 C 38 38
71 Philippines 11914 A 38 38
72 Philippines 11915 T 38 37
73 Philippines 11916 C 38 38
74 Philippines 11917 A 38 38
75 Philippines 11918 T 38 38
76 Philippines 11919 C 38 38
77 Philippines 11920 T 38 38
78 Philippines 11921 A 38 38
79 Philippines 11922 A 38 38
80 Philippines 11923 A 38 38
81 Philippines 11924 T 38 38
82 Philippines 11925 T 38 38
83 Philippines 11926 G 38 38
84 Philippines 11927 T 38 38
85 Philippines 11928 G 38 38
86 Philippines 11929 G 37 37
87 Philippines 11930 G 37 37
88 Philippines 11931 C 37 37
89 Philippines 11932 T 37 37
90 Philippines 11933 C 37 37
91 Philippines 11934 A 37 37
92 Philippines 11935 A 37 37
93 Philippines 11936 T 37 37
94 Philippines 11937 G 37 37
95 Philippines 11938 T 37 37
96 Philippines 11939 G 37 37
97 Philippines 11940 T 37 37
98 Philippines 11941 C 37 37
99 Philippines 11942 C 37 37
100 Philippines 11943 A 37 37
101 Philippines 11944 G 37 37
102 Philippines 11945 T 37 37
103 Philippines 11946 T 37 37
104 Philippines 11947 A 37 37
105 Philippines 11948 C 37 37
106 Philippines 11949 A 37 37
107 Philippines 11950 C 37 37
108 Philippines 11951 A 37 37
109 Philippines 11952 A 37 37
110 Philippines 11953 T 37 37
111 Philippines 11954 G 37 37
112 Philippines 11955 A 37 37
113 Philippines 11956 C 37 37
114 Philippines 11957 A 37 37
115 Philippines 11958 T 37 37
116 Philippines 11959 T 37 37
117 Philippines 11960 C 37 37
118 Philippines 11961 T 37 37
119 Philippines 11962 C 37 37
120 Philippines 11963 T 37 37
121 Philippines 11964 T 37 37
122 Philippines 11965 A 37 37
123 Philippines 11966 G 37 37
124 Philippines 11967 C 37 37
125 Philippines 11968 T 37 37
126 Philippines 11969 A 37 37
127 Philippines 11970 A 37 37
128 Philippines 11971 A 37 37
129 Philippines 11972 G 37 37
130 Philippines 11973 A 37 37
131 Philippines 11974 T 37 37
132 Philippines 11975 A 37 37
133 Philippines 11976 C 37 37
134 Philippines 11977 T 37 37
135 Philippines 11978 A 37 37
136 Philippines 11979 C 37 37
137 Philippines 11980 T 37 37
138 Philippines 11981 G 37 37
139 Philippines 11982 A 37 37
140 Philippines 11983 A 37 37
141 Philippines 11984 G 37 37
142 Philippines 11985 C 37 37
143 Philippines 11986 C 37 37
144 Philippines 11987 T 37 37
145 Philippines 11988 T 37 37
146 Philippines 11989 T 37 37
147 Philippines 11990 G 37 37
148 Philippines 11991 A 37 37
149 Philippines 11992 A 37 37
150 Philippines 11993 A 37 37
151 Philippines 11994 A 37 37
152 Philippines 11995 A 37 37
153 Philippines 11996 A 37 37
154 Philippines 11997 T 37 37
155 Philippines 11998 G 37 37
156 Philippines 11999 G 37 37
157 Philippines 12000 T 37 37
158 Philippines 12001 T 37 37
159 Philippines 12002 T 37 37
160 Philippines 12003 C 37 37
161 Philippines 12004 A 37 37
162 Philippines 12005 C 37 37
163 Philippines 12006 T 37 37
164 Philippines 12007 A 37 37
165 Philippines 12008 C 37 37
166 Philippines 12009 T 37 37
167 Philippines 12010 T 37 37
168 Philippines 12011 T 37 37
169 Philippines 12012 C 37 37
170 Philippines 12013 T 37 37
171 Philippines 12014 G 37 37
172 Philippines 12015 T 37 37
173 Philippines 12016 T 37 37
174 Philippines 12017 T 37 37
175 Philippines 12018 T 37 37
176 Philippines 12019 G 37 37
177 Philippines 12020 C 37 37
178 Philippines 12021 T 37 37
179 Philippines 12022 T 37 37
180 Philippines 12023 T 37 37
181 Philippines 12024 C 37 37
182 Philippines 12025 C 37 37
183 Philippines 12026 A 37 37
184 Philippines 12027 T 37 37
185 Philippines 12028 G 37 37
186 Philippines 12029 C 37 37
187 Philippines 12030 A 37 37
188 Philippines 12031 G 37 37
189 Philippines 12032 G 37 37
190 Philippines 12033 G 37 37
191 Philippines 12034 T 37 37
192 Philippines 12035 G 37 37
193 Philippines 12036 C 37 37
194 Philippines 12037 T 37 37
195 Philippines 12038 G 37 37
196 Philippines 12039 T 37 37
197 Philippines 12040 A 37 37
198 Philippines 12041 G 37 37
199 Philippines 12042 A 37 37
200 Philippines 12043 C 37 37
201 Philippines 12044 A 37 37
202 Philippines 12045 T 37 37
203 Philippines 12046 A 37 37
204 Philippines 12047 A 37 37
205 Philippines 12048 A 37 37
206 Philippines 12049 C T 37 35 Asn3928Asn
207 Philippines 12050 A 37 37
208 Philippines 12051 A 37 37
209 Philippines 12052 G 37 37
210 Philippines 12053 C T 37 36 Leu3930Phe
211 Philippines 12054 T 37 37
212 Philippines 12055 T 37 37
213 Philippines 12056 T 37 37
214 Philippines 12057 G 37 37
215 Philippines 12058 T 37 37
216 Philippines 12059 G 37 37
217 Philippines 12060 A 37 37
218 Philippines 12061 A 37 37
219 Philippines 12062 G 37 37
220 Philippines 12063 A 37 37
221 Philippines 12064 A 37 37
222 Philippines 12065 A 37 37
223 Philippines 12066 T 37 37
224 Philippines 12067 G 37 37
225 Philippines 12068 C 37 37
226 Philippines 12069 T 37 37
227 Philippines 12070 G 37 37
228 Philippines 12071 G 37 37
229 Philippines 12072 A 37 37
230 Philippines 12073 C 37 37
231 Philippines 12074 A 37 37
232 Philippines 12075 A 37 37
233 Philippines 12076 C 37 37
234 Philippines 12077 A 37 37
235 Philippines 12078 G 37 37
236 Philippines 12079 G 37 37
237 Philippines 12080 G 37 37
238 Philippines 12081 C 37 37
239 Philippines 12082 A 37 37
240 Philippines 12083 A 37 37
241 Philippines 12084 C 37 37
242 Philippines 12085 C 37 37
243 Philippines 12086 T 37 37
244 Philippines 12087 T 37 37
245 Philippines 12088 A 37 37
246 Philippines 12089 C 37 37
247 Philippines 12090 A 37 37
248 Philippines 12091 A 37 37