National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15     1                              
E   15       1                            
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45         2         3                
M   12                                    
N   9                       1            
Q   18                                    
R   6                                    
S   30                                    
T   12               1                    
V   27               1                 1  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Peru 11843 T 528 528
1 Peru 11844 C 528 528
2 Peru 11845 T 528 528
3 Peru 11846 A 528 528
4 Peru 11847 A 528 528
5 Peru 11848 A 528 528
6 Peru 11849 A 528 528
7 Peru 11850 T 528 528
8 Peru 11851 G 528 528
9 Peru 11852 T 528 528
10 Peru 11853 C 528 528
11 Peru 11854 A 528 528
12 Peru 11855 G 528 528
13 Peru 11856 A 528 528
14 Peru 11857 T 528 528
15 Peru 11858 G 528 528
16 Peru 11859 T 528 528
17 Peru 11860 A 528 528
18 Peru 11861 A 528 528
19 Peru 11862 A 528 528
20 Peru 11863 G 528 528
21 Peru 11864 T 528 528
22 Peru 11865 G 528 528
23 Peru 11866 C 528 528
24 Peru 11867 A 528 528
25 Peru 11868 C T 528 527 Thr3868Ile
26 Peru 11869 A 528 528
27 Peru 11870 T 528 528
28 Peru 11871 C 528 528
29 Peru 11872 A 528 528
30 Peru 11873 G 528 528
31 Peru 11874 T 528 528
32 Peru 11875 A 528 528
33 Peru 11876 G 528 528
34 Peru 11877 T 528 528
35 Peru 11878 C 528 528
36 Peru 11879 T 528 528
37 Peru 11880 T 528 528
38 Peru 11881 A 528 528
39 Peru 11882 C 528 528
40 Peru 11883 T 528 528
41 Peru 11884 C 528 528
42 Peru 11885 T 528 528
43 Peru 11886 C 528 528
44 Peru 11887 A 528 528
45 Peru 11888 G A 528 527 Val3875Ile
46 Peru 11889 T 528 528
47 Peru 11890 T 528 528
48 Peru 11891 T 528 528
49 Peru 11892 T 528 528
50 Peru 11893 G 528 528
51 Peru 11894 C 528 528
52 Peru 11895 A 528 528
53 Peru 11896 A 528 528
54 Peru 11897 C 528 528
55 Peru 11898 A 528 528
56 Peru 11899 A 528 528
57 Peru 11900 C 528 528
58 Peru 11901 T 528 528
59 Peru 11902 C 528 528
60 Peru 11903 A 528 528
61 Peru 11904 G 528 528
62 Peru 11905 A 528 528
63 Peru 11906 G 528 528
64 Peru 11907 T 528 528
65 Peru 11908 A 528 528
66 Peru 11909 G 528 528
67 Peru 11910 A 528 528
68 Peru 11911 A 528 528
69 Peru 11912 T 528 528
70 Peru 11913 C 528 528
71 Peru 11914 A 528 528
72 Peru 11915 T 528 528
73 Peru 11916 C 528 528
74 Peru 11917 A 528 528
75 Peru 11918 T 528 528
76 Peru 11919 C 528 528
77 Peru 11920 T 528 528
78 Peru 11921 A 528 528
79 Peru 11922 A 528 528
80 Peru 11923 A 528 528
81 Peru 11924 T C 528 527 Leu3887Leu
82 Peru 11925 T 528 528
83 Peru 11926 G 528 528
84 Peru 11927 T 528 528
85 Peru 11928 G 528 528
86 Peru 11929 G 528 528
87 Peru 11930 G 528 528
88 Peru 11931 C 528 528
89 Peru 11932 T 528 528
90 Peru 11933 C 528 528
91 Peru 11934 A 528 528
92 Peru 11935 A 528 528
93 Peru 11936 T 528 528
94 Peru 11937 G 528 528
95 Peru 11938 T 528 528
96 Peru 11939 G 528 528
97 Peru 11940 T 528 528
98 Peru 11941 C T 528 526 Val3892Val
99 Peru 11942 C 528 528
100 Peru 11943 A 528 528
101 Peru 11944 G 528 528
102 Peru 11945 T 528 528
103 Peru 11946 T 528 528
104 Peru 11947 A 528 528
105 Peru 11948 C 528 528
106 Peru 11949 A 528 528
107 Peru 11950 C 528 528
108 Peru 11951 A 528 528
109 Peru 11952 A 528 528
110 Peru 11953 T 528 528
111 Peru 11954 G 528 528
112 Peru 11955 A 528 528
113 Peru 11956 C T 528 526 Asp3897Asp
114 Peru 11957 A 528 528
115 Peru 11958 T 528 528
116 Peru 11959 T 528 528
117 Peru 11960 C 528 528
118 Peru 11961 T 528 528
119 Peru 11962 C T 528 526 Leu3899Leu
120 Peru 11963 T 528 528
121 Peru 11964 T 528 528
122 Peru 11965 A 528 528
123 Peru 11966 G 528 528
124 Peru 11967 C 528 528
125 Peru 11968 T 528 528
126 Peru 11969 A 528 528
127 Peru 11970 A 528 528
128 Peru 11971 A 528 528
129 Peru 11972 G 528 528
130 Peru 11973 A 528 528
131 Peru 11974 T 528 528
132 Peru 11975 A 528 528
133 Peru 11976 C 528 528
134 Peru 11977 T 528 528
135 Peru 11978 A 528 528
136 Peru 11979 C 528 528
137 Peru 11980 T 528 528
138 Peru 11981 G 528 528
139 Peru 11982 A 528 528
140 Peru 11983 A G 528 526 Glu3906Glu
141 Peru 11984 G 528 528
142 Peru 11985 C 528 528
143 Peru 11986 C 528 528
144 Peru 11987 T 528 528
145 Peru 11988 T 528 528
146 Peru 11989 T 528 528
147 Peru 11990 G 528 528
148 Peru 11991 A 528 528
149 Peru 11992 A 528 528
150 Peru 11993 A 528 528
151 Peru 11994 A 528 528
152 Peru 11995 A 528 528
153 Peru 11996 A 528 528
154 Peru 11997 T 528 528
155 Peru 11998 G 528 528
156 Peru 11999 G 528 528
157 Peru 12000 T 528 528
158 Peru 12001 T 528 528
159 Peru 12002 T 528 528
160 Peru 12003 C 528 528
161 Peru 12004 A 528 528
162 Peru 12005 C 528 528
163 Peru 12006 T 528 528
164 Peru 12007 A 528 528
165 Peru 12008 C 528 528
166 Peru 12009 T 528 528
167 Peru 12010 T 528 528
168 Peru 12011 T 528 528
169 Peru 12012 C 528 528
170 Peru 12013 T 528 528
171 Peru 12014 G 528 528
172 Peru 12015 T 528 528
173 Peru 12016 T 528 528
174 Peru 12017 T 528 528
175 Peru 12018 T 528 528
176 Peru 12019 G 528 528
177 Peru 12020 C T 528 525 Leu3919Phe
178 Peru 12021 T 528 528
179 Peru 12022 T 528 528
180 Peru 12023 T 528 528
181 Peru 12024 C 528 528
182 Peru 12025 C 528 528
183 Peru 12026 A 528 528
184 Peru 12027 T 528 528
185 Peru 12028 G 528 528
186 Peru 12029 C 528 528
187 Peru 12030 A 528 528
188 Peru 12031 G 528 528
189 Peru 12032 G 528 528
190 Peru 12033 G 528 528
191 Peru 12034 T 528 528
192 Peru 12035 G 528 528
193 Peru 12036 C 528 528
194 Peru 12037 T 528 528
195 Peru 12038 G 528 528
196 Peru 12039 T 528 528
197 Peru 12040 A 528 528
198 Peru 12041 G 528 528
199 Peru 12042 A 528 528
200 Peru 12043 C 528 528
201 Peru 12044 A 528 528
202 Peru 12045 T 528 528
203 Peru 12046 A 528 528
204 Peru 12047 A 528 528
205 Peru 12048 A 528 528
206 Peru 12049 C 528 528
207 Peru 12050 A 528 528
208 Peru 12051 A 528 528
209 Peru 12052 G 528 528
210 Peru 12053 C T 528 527 Leu3930Phe
211 Peru 12054 T 528 528
212 Peru 12055 T 528 528
213 Peru 12056 T 528 528
214 Peru 12057 G 528 528
215 Peru 12058 T 528 528
216 Peru 12059 G 528 528
217 Peru 12060 A 528 528
218 Peru 12061 A 528 528
219 Peru 12062 G 528 528
220 Peru 12063 A 528 528
221 Peru 12064 A 528 528
222 Peru 12065 A 528 528
223 Peru 12066 T 528 528
224 Peru 12067 G 528 528
225 Peru 12068 C 528 528
226 Peru 12069 T 528 528
227 Peru 12070 G T 528 527 Leu3935Leu
228 Peru 12071 G 528 528
229 Peru 12072 A 528 528
230 Peru 12073 C 528 528
231 Peru 12074 A 528 528
232 Peru 12075 A 528 528
233 Peru 12076 C T 528 521 Asn3937Asn
234 Peru 12077 A 528 528
235 Peru 12078 G 528 528
236 Peru 12079 G 528 528
237 Peru 12080 G 528 528
238 Peru 12081 C 528 528
239 Peru 12082 A 528 528
240 Peru 12083 A 528 528
241 Peru 12084 C 528 528
242 Peru 12085 C 528 528
243 Peru 12086 T 528 528
244 Peru 12087 T 528 528
245 Peru 12088 A 528 528
246 Peru 12089 C 528 528
247 Peru 12090 A 528 528
248 Peru 12091 A 528 528