National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15           1                        
F   3         1                          
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12               2                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Panama 11843 T 311 311
1 Panama 11844 C 311 310
2 Panama 11845 T 311 311
3 Panama 11846 A 311 311
4 Panama 11847 A 311 311
5 Panama 11848 A 311 311
6 Panama 11849 A 311 311
7 Panama 11850 T 311 311
8 Panama 11851 G T 311 302 Met3862Ile
9 Panama 11852 T 311 311
10 Panama 11853 C 311 311
11 Panama 11854 A 311 311
12 Panama 11855 G 311 311
13 Panama 11856 A 311 311
14 Panama 11857 T 311 311
15 Panama 11858 G 311 311
16 Panama 11859 T 311 311
17 Panama 11860 A 311 311
18 Panama 11861 A 311 311
19 Panama 11862 A 312 311
20 Panama 11863 G 312 312
21 Panama 11864 T 312 311
22 Panama 11865 G 312 312
23 Panama 11866 C 312 312
24 Panama 11867 A 312 311
25 Panama 11868 C 312 310
26 Panama 11869 A 312 311
27 Panama 11870 T 312 311
28 Panama 11871 C 312 312
29 Panama 11872 A 312 312
30 Panama 11873 G 312 312
31 Panama 11874 T 312 312
32 Panama 11875 A 313 313
33 Panama 11876 G 314 314
34 Panama 11877 T 314 313
35 Panama 11878 C 314 314
36 Panama 11879 T 314 314
37 Panama 11880 T 314 314
38 Panama 11881 A 314 314
39 Panama 11882 C 314 314
40 Panama 11883 T 314 314
41 Panama 11884 C 314 314
42 Panama 11885 T 314 314
43 Panama 11886 C 314 314
44 Panama 11887 A 314 314
45 Panama 11888 G 314 314
46 Panama 11889 T 314 314
47 Panama 11890 T 314 314
48 Panama 11891 T 314 314
49 Panama 11892 T 314 314
50 Panama 11893 G 314 314
51 Panama 11894 C 314 314
52 Panama 11895 A 314 314
53 Panama 11896 A 314 314
54 Panama 11897 C 314 314
55 Panama 11898 A 314 314
56 Panama 11899 A 314 314
57 Panama 11900 C 314 314
58 Panama 11901 T 314 314
59 Panama 11902 C 314 314
60 Panama 11903 A 314 314
61 Panama 11904 G 314 314
62 Panama 11905 A 314 314
63 Panama 11906 G 314 314
64 Panama 11907 T 314 314
65 Panama 11908 A 314 314
66 Panama 11909 G 314 314
67 Panama 11910 A 314 314
68 Panama 11911 A 314 314
69 Panama 11912 T 314 314
70 Panama 11913 C 314 314
71 Panama 11914 A 314 314
72 Panama 11915 T 314 314
73 Panama 11916 C 314 314
74 Panama 11917 A 314 314
75 Panama 11918 T 314 314
76 Panama 11919 C 314 314
77 Panama 11920 T 314 314
78 Panama 11921 A 314 314
79 Panama 11922 A 314 314
80 Panama 11923 A 314 314
81 Panama 11924 T 314 314
82 Panama 11925 T 314 314
83 Panama 11926 G 314 314
84 Panama 11927 T 314 314
85 Panama 11928 G 314 314
86 Panama 11929 G 314 314
87 Panama 11930 G 314 314
88 Panama 11931 C 314 314
89 Panama 11932 T 314 314
90 Panama 11933 C 314 314
91 Panama 11934 A 314 314
92 Panama 11935 A 314 314
93 Panama 11936 T 314 314
94 Panama 11937 G 314 314
95 Panama 11938 T 314 314
96 Panama 11939 G 314 314
97 Panama 11940 T 314 314
98 Panama 11941 C 314 314
99 Panama 11942 C 314 314
100 Panama 11943 A 314 314
101 Panama 11944 G 314 314
102 Panama 11945 T 314 314
103 Panama 11946 T 314 314
104 Panama 11947 A 314 314
105 Panama 11948 C 314 314
106 Panama 11949 A 314 314
107 Panama 11950 C 314 314
108 Panama 11951 A 314 314
109 Panama 11952 A 314 314
110 Panama 11953 T 314 314
111 Panama 11954 G 314 314
112 Panama 11955 A 314 314
113 Panama 11956 C 314 314
114 Panama 11957 A 314 314
115 Panama 11958 T 314 314
116 Panama 11959 T 314 314
117 Panama 11960 C 314 314
118 Panama 11961 T 314 314
119 Panama 11962 C 314 314
120 Panama 11963 T 314 314
121 Panama 11964 T 314 314
122 Panama 11965 A 314 314
123 Panama 11966 G 314 314
124 Panama 11967 C 314 314
125 Panama 11968 T 314 314
126 Panama 11969 A 314 314
127 Panama 11970 A 314 314
128 Panama 11971 A 314 314
129 Panama 11972 G 314 314
130 Panama 11973 A 314 314
131 Panama 11974 T 314 314
132 Panama 11975 A 314 314
133 Panama 11976 C 314 314
134 Panama 11977 T 314 314
135 Panama 11978 A 314 314
136 Panama 11979 C 314 314
137 Panama 11980 T 314 314
138 Panama 11981 G 314 314
139 Panama 11982 A 314 314
140 Panama 11983 A 314 314
141 Panama 11984 G 314 314
142 Panama 11985 C 314 314
143 Panama 11986 C 314 314
144 Panama 11987 T 314 314
145 Panama 11988 T 314 314
146 Panama 11989 T C 314 313 Phe3908Phe
147 Panama 11990 G 314 314
148 Panama 11991 A G 314 313 Glu3909Gly
149 Panama 11992 A 314 314
150 Panama 11993 A 314 314
151 Panama 11994 A 314 314
152 Panama 11995 A 314 314
153 Panama 11996 A 314 314
154 Panama 11997 T 314 314
155 Panama 11998 G 314 314
156 Panama 11999 G 314 314
157 Panama 12000 T 314 314
158 Panama 12001 T 314 314
159 Panama 12002 T 314 314
160 Panama 12003 C 314 314
161 Panama 12004 A 314 314
162 Panama 12005 C 314 314
163 Panama 12006 T 314 314
164 Panama 12007 A 314 314
165 Panama 12008 C 314 314
166 Panama 12009 T 314 314
167 Panama 12010 T 314 314
168 Panama 12011 T 314 314
169 Panama 12012 C 314 314
170 Panama 12013 T 314 314
171 Panama 12014 G 314 314
172 Panama 12015 T 314 314
173 Panama 12016 T 314 314
174 Panama 12017 T 314 314
175 Panama 12018 T 314 314
176 Panama 12019 G 314 314
177 Panama 12020 C 314 314
178 Panama 12021 T 314 314
179 Panama 12022 T 314 314
180 Panama 12023 T 314 314
181 Panama 12024 C 314 314
182 Panama 12025 C 314 314
183 Panama 12026 A 314 314
184 Panama 12027 T 314 314
185 Panama 12028 G 314 314
186 Panama 12029 C 314 314
187 Panama 12030 A 314 314
188 Panama 12031 G 314 314
189 Panama 12032 G 314 314
190 Panama 12033 G 314 314
191 Panama 12034 T 314 314
192 Panama 12035 G 314 314
193 Panama 12036 C 314 314
194 Panama 12037 T 314 314
195 Panama 12038 G 314 314
196 Panama 12039 T 314 314
197 Panama 12040 A 314 314
198 Panama 12041 G 314 314
199 Panama 12042 A 314 314
200 Panama 12043 C 314 314
201 Panama 12044 A 314 314
202 Panama 12045 T 314 314
203 Panama 12046 A 314 314
204 Panama 12047 A 314 314
205 Panama 12048 A 314 314
206 Panama 12049 C 314 314
207 Panama 12050 A 314 314
208 Panama 12051 A 314 314
209 Panama 12052 G 314 314
210 Panama 12053 C 314 314
211 Panama 12054 T 314 314
212 Panama 12055 T 314 314
213 Panama 12056 T 314 314
214 Panama 12057 G 314 314
215 Panama 12058 T 314 314
216 Panama 12059 G 314 314
217 Panama 12060 A 314 314
218 Panama 12061 A 314 314
219 Panama 12062 G 314 314
220 Panama 12063 A 314 314
221 Panama 12064 A 314 314
222 Panama 12065 A 314 314
223 Panama 12066 T 314 314
224 Panama 12067 G T 314 313 Met3934Ile
225 Panama 12068 C 314 314
226 Panama 12069 T 314 314
227 Panama 12070 G 314 314
228 Panama 12071 G 314 314
229 Panama 12072 A 314 314
230 Panama 12073 C 314 314
231 Panama 12074 A 314 314
232 Panama 12075 A 314 314
233 Panama 12076 C 314 314
234 Panama 12077 A 314 314
235 Panama 12078 G 314 314
236 Panama 12079 G 314 314
237 Panama 12080 G 314 314
238 Panama 12081 C 314 314
239 Panama 12082 A 314 314
240 Panama 12083 A 314 314
241 Panama 12084 C 314 314
242 Panama 12085 C 314 314
243 Panama 12086 T 314 314
244 Panama 12087 T 314 314
245 Panama 12088 A 314 314
246 Panama 12089 C 314 314
247 Panama 12090 A 314 314
248 Panama 12091 A 314 314