National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Pakistan 11843 T 56 56
1 Pakistan 11844 C 56 56
2 Pakistan 11845 T 56 56
3 Pakistan 11846 A 56 56
4 Pakistan 11847 A 56 56
5 Pakistan 11848 A 56 56
6 Pakistan 11849 A 56 56
7 Pakistan 11850 T 56 56
8 Pakistan 11851 G 56 56
9 Pakistan 11852 T 56 56
10 Pakistan 11853 C 56 56
11 Pakistan 11854 A 56 56
12 Pakistan 11855 G 56 56
13 Pakistan 11856 A 56 56
14 Pakistan 11857 T 56 56
15 Pakistan 11858 G 56 56
16 Pakistan 11859 T 56 56
17 Pakistan 11860 A 56 56
18 Pakistan 11861 A 56 56
19 Pakistan 11862 A 56 56
20 Pakistan 11863 G 56 56
21 Pakistan 11864 T 56 56
22 Pakistan 11865 G 56 56
23 Pakistan 11866 C 56 56
24 Pakistan 11867 A 56 56
25 Pakistan 11868 C 56 56
26 Pakistan 11869 A 56 56
27 Pakistan 11870 T 56 56
28 Pakistan 11871 C 56 56
29 Pakistan 11872 A 56 56
30 Pakistan 11873 G 56 56
31 Pakistan 11874 T 56 56
32 Pakistan 11875 A 56 56
33 Pakistan 11876 G 56 56
34 Pakistan 11877 T 56 56
35 Pakistan 11878 C 56 56
36 Pakistan 11879 T 56 56
37 Pakistan 11880 T 56 56
38 Pakistan 11881 A 56 56
39 Pakistan 11882 C 56 56
40 Pakistan 11883 T 56 56
41 Pakistan 11884 C 56 56
42 Pakistan 11885 T 56 56
43 Pakistan 11886 C 56 56
44 Pakistan 11887 A 56 56
45 Pakistan 11888 G 56 56
46 Pakistan 11889 T 56 56
47 Pakistan 11890 T 56 56
48 Pakistan 11891 T 56 56
49 Pakistan 11892 T 56 56
50 Pakistan 11893 G 56 56
51 Pakistan 11894 C 56 56
52 Pakistan 11895 A 56 56
53 Pakistan 11896 A 56 56
54 Pakistan 11897 C 56 56
55 Pakistan 11898 A 56 56
56 Pakistan 11899 A 56 56
57 Pakistan 11900 C 56 56
58 Pakistan 11901 T 56 56
59 Pakistan 11902 C 56 56
60 Pakistan 11903 A 56 56
61 Pakistan 11904 G 56 56
62 Pakistan 11905 A 56 56
63 Pakistan 11906 G 56 56
64 Pakistan 11907 T 56 56
65 Pakistan 11908 A 56 56
66 Pakistan 11909 G 56 56
67 Pakistan 11910 A 56 56
68 Pakistan 11911 A 56 56
69 Pakistan 11912 T 57 57
70 Pakistan 11913 C 57 57
71 Pakistan 11914 A 57 57
72 Pakistan 11915 T 57 57
73 Pakistan 11916 C 57 57
74 Pakistan 11917 A 57 57
75 Pakistan 11918 T 57 57
76 Pakistan 11919 C 57 57
77 Pakistan 11920 T 57 57
78 Pakistan 11921 A 57 57
79 Pakistan 11922 A 57 57
80 Pakistan 11923 A 57 57
81 Pakistan 11924 T 57 57
82 Pakistan 11925 T 57 57
83 Pakistan 11926 G 57 57
84 Pakistan 11927 T 57 57
85 Pakistan 11928 G 57 57
86 Pakistan 11929 G 57 57
87 Pakistan 11930 G 57 57
88 Pakistan 11931 C 57 57
89 Pakistan 11932 T 57 57
90 Pakistan 11933 C 57 57
91 Pakistan 11934 A 57 57
92 Pakistan 11935 A 57 57
93 Pakistan 11936 T 57 57
94 Pakistan 11937 G 57 57
95 Pakistan 11938 T 57 57
96 Pakistan 11939 G 57 57
97 Pakistan 11940 T 57 57
98 Pakistan 11941 C 57 57
99 Pakistan 11942 C 57 57
100 Pakistan 11943 A 57 57
101 Pakistan 11944 G 57 57
102 Pakistan 11945 T 57 57
103 Pakistan 11946 T 57 57
104 Pakistan 11947 A 57 57
105 Pakistan 11948 C 57 57
106 Pakistan 11949 A 57 57
107 Pakistan 11950 C 57 57
108 Pakistan 11951 A 57 57
109 Pakistan 11952 A 57 57
110 Pakistan 11953 T 57 57
111 Pakistan 11954 G 57 57
112 Pakistan 11955 A 57 57
113 Pakistan 11956 C 57 57
114 Pakistan 11957 A 57 57
115 Pakistan 11958 T 57 57
116 Pakistan 11959 T 57 57
117 Pakistan 11960 C 57 57
118 Pakistan 11961 T 57 57
119 Pakistan 11962 C 57 57
120 Pakistan 11963 T 57 57
121 Pakistan 11964 T 57 57
122 Pakistan 11965 A 57 57
123 Pakistan 11966 G 57 57
124 Pakistan 11967 C 57 57
125 Pakistan 11968 T 57 57
126 Pakistan 11969 A 57 57
127 Pakistan 11970 A 57 57
128 Pakistan 11971 A 57 57
129 Pakistan 11972 G 57 57
130 Pakistan 11973 A 57 57
131 Pakistan 11974 T 57 57
132 Pakistan 11975 A 57 57
133 Pakistan 11976 C 57 57
134 Pakistan 11977 T 57 57
135 Pakistan 11978 A 57 57
136 Pakistan 11979 C 57 56
137 Pakistan 11980 T 57 56
138 Pakistan 11981 G 57 56
139 Pakistan 11982 A 57 56
140 Pakistan 11983 A 57 56
141 Pakistan 11984 G 57 56
142 Pakistan 11985 C 57 56
143 Pakistan 11986 C 57 56
144 Pakistan 11987 T 57 56
145 Pakistan 11988 T 57 56
146 Pakistan 11989 T 57 56
147 Pakistan 11990 G 57 56
148 Pakistan 11991 A 57 56
149 Pakistan 11992 A 57 56
150 Pakistan 11993 A 57 56
151 Pakistan 11994 A 57 56
152 Pakistan 11995 A 57 56
153 Pakistan 11996 A 57 56
154 Pakistan 11997 T 57 56
155 Pakistan 11998 G 57 56
156 Pakistan 11999 G 57 56
157 Pakistan 12000 T 57 56
158 Pakistan 12001 T 57 56
159 Pakistan 12002 T 57 56
160 Pakistan 12003 C 57 56
161 Pakistan 12004 A 57 56
162 Pakistan 12005 C 57 57
163 Pakistan 12006 T 57 57
164 Pakistan 12007 A 57 57
165 Pakistan 12008 C 57 57
166 Pakistan 12009 T 57 57
167 Pakistan 12010 T 57 57
168 Pakistan 12011 T 57 57
169 Pakistan 12012 C 57 57
170 Pakistan 12013 T 57 57
171 Pakistan 12014 G 57 57
172 Pakistan 12015 T 57 57
173 Pakistan 12016 T 57 57
174 Pakistan 12017 T 57 57
175 Pakistan 12018 T 57 57
176 Pakistan 12019 G 57 57
177 Pakistan 12020 C 57 57
178 Pakistan 12021 T 57 57
179 Pakistan 12022 T 57 57
180 Pakistan 12023 T 57 57
181 Pakistan 12024 C 57 57
182 Pakistan 12025 C 57 57
183 Pakistan 12026 A 57 57
184 Pakistan 12027 T 57 57
185 Pakistan 12028 G 57 57
186 Pakistan 12029 C 57 57
187 Pakistan 12030 A 57 57
188 Pakistan 12031 G 57 57
189 Pakistan 12032 G 57 57
190 Pakistan 12033 G 57 57
191 Pakistan 12034 T 57 57
192 Pakistan 12035 G 57 57
193 Pakistan 12036 C 57 57
194 Pakistan 12037 T 57 57
195 Pakistan 12038 G 57 57
196 Pakistan 12039 T 57 57
197 Pakistan 12040 A 57 57
198 Pakistan 12041 G 57 57
199 Pakistan 12042 A 57 57
200 Pakistan 12043 C 57 57
201 Pakistan 12044 A 57 57
202 Pakistan 12045 T 57 57
203 Pakistan 12046 A 57 57
204 Pakistan 12047 A 57 57
205 Pakistan 12048 A 57 57
206 Pakistan 12049 C 57 57
207 Pakistan 12050 A 57 57
208 Pakistan 12051 A 57 57
209 Pakistan 12052 G 57 57
210 Pakistan 12053 C 57 57
211 Pakistan 12054 T 57 57
212 Pakistan 12055 T 57 57
213 Pakistan 12056 T 57 57
214 Pakistan 12057 G 57 57
215 Pakistan 12058 T 57 57
216 Pakistan 12059 G 57 57
217 Pakistan 12060 A 57 57
218 Pakistan 12061 A 57 57
219 Pakistan 12062 G 57 57
220 Pakistan 12063 A 57 57
221 Pakistan 12064 A 57 57
222 Pakistan 12065 A 57 57
223 Pakistan 12066 T 57 57
224 Pakistan 12067 G 57 57
225 Pakistan 12068 C 57 57
226 Pakistan 12069 T 57 57
227 Pakistan 12070 G 57 57
228 Pakistan 12071 G 57 57
229 Pakistan 12072 A 57 57
230 Pakistan 12073 C 57 57
231 Pakistan 12074 A 57 57
232 Pakistan 12075 A 57 57
233 Pakistan 12076 C 57 57
234 Pakistan 12077 A 57 57
235 Pakistan 12078 G 57 57
236 Pakistan 12079 G 57 57
237 Pakistan 12080 G 57 57
238 Pakistan 12081 C 57 57
239 Pakistan 12082 A 57 57
240 Pakistan 12083 A 57 57
241 Pakistan 12084 C 57 57
242 Pakistan 12085 C 57 57
243 Pakistan 12086 T 57 57
244 Pakistan 12087 T 57 57
245 Pakistan 12088 A 57 57
246 Pakistan 12089 C 57 57
247 Pakistan 12090 A 57 57
248 Pakistan 12091 A 57 57