National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9   1                                
D   15     1                              
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6               1                    
K   18                                    
L   45                                    
M   12                                    
N   9                       1            
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Oman 11843 T 396 396
1 Oman 11844 C 396 396
2 Oman 11845 T 396 396
3 Oman 11846 A 396 396
4 Oman 11847 A 396 396
5 Oman 11848 A 396 396
6 Oman 11849 A 396 396
7 Oman 11850 T 396 396
8 Oman 11851 G 396 396
9 Oman 11852 T 396 396
10 Oman 11853 C 396 396
11 Oman 11854 A 396 396
12 Oman 11855 G 396 396
13 Oman 11856 A 396 396
14 Oman 11857 T 396 396
15 Oman 11858 G 396 396
16 Oman 11859 T 396 396
17 Oman 11860 A 396 396
18 Oman 11861 A 396 396
19 Oman 11862 A 396 396
20 Oman 11863 G 396 396
21 Oman 11864 T 396 396
22 Oman 11865 G 396 396
23 Oman 11866 C T 396 390 Cys3867Cys
24 Oman 11867 A 396 396
25 Oman 11868 C 396 396
26 Oman 11869 A 396 396
27 Oman 11870 T 396 396
28 Oman 11871 C 396 396
29 Oman 11872 A 396 396
30 Oman 11873 G 396 396
31 Oman 11874 T 396 396
32 Oman 11875 A 396 396
33 Oman 11876 G 396 396
34 Oman 11877 T 396 396
35 Oman 11878 C 396 396
36 Oman 11879 T 396 396
37 Oman 11880 T 396 396
38 Oman 11881 A 396 396
39 Oman 11882 C 396 396
40 Oman 11883 T 396 396
41 Oman 11884 C 396 396
42 Oman 11885 T 396 396
43 Oman 11886 C 396 396
44 Oman 11887 A 396 396
45 Oman 11888 G 396 396
46 Oman 11889 T 396 396
47 Oman 11890 T 396 396
48 Oman 11891 T 396 396
49 Oman 11892 T 396 396
50 Oman 11893 G 396 396
51 Oman 11894 C 396 396
52 Oman 11895 A 396 396
53 Oman 11896 A 396 396
54 Oman 11897 C 396 396
55 Oman 11898 A 396 396
56 Oman 11899 A 396 396
57 Oman 11900 C 396 396
58 Oman 11901 T 396 396
59 Oman 11902 C 396 396
60 Oman 11903 A 396 396
61 Oman 11904 G 396 396
62 Oman 11905 A 396 396
63 Oman 11906 G 396 396
64 Oman 11907 T 396 396
65 Oman 11908 A 396 396
66 Oman 11909 G 396 396
67 Oman 11910 A 396 396
68 Oman 11911 A 396 396
69 Oman 11912 T 396 396
70 Oman 11913 C 396 396
71 Oman 11914 A 396 396
72 Oman 11915 T 396 396
73 Oman 11916 C 396 396
74 Oman 11917 A 396 396
75 Oman 11918 T 396 396
76 Oman 11919 C 396 396
77 Oman 11920 T 396 396
78 Oman 11921 A 396 396
79 Oman 11922 A 396 396
80 Oman 11923 A 396 396
81 Oman 11924 T 396 396
82 Oman 11925 T 396 396
83 Oman 11926 G 396 396
84 Oman 11927 T 396 396
85 Oman 11928 G 396 396
86 Oman 11929 G 396 396
87 Oman 11930 G 396 396
88 Oman 11931 C 396 396
89 Oman 11932 T 396 396
90 Oman 11933 C 396 396
91 Oman 11934 A 396 396
92 Oman 11935 A 396 396
93 Oman 11936 T 396 396
94 Oman 11937 G 396 396
95 Oman 11938 T 396 396
96 Oman 11939 G 396 396
97 Oman 11940 T 396 396
98 Oman 11941 C 396 396
99 Oman 11942 C 396 396
100 Oman 11943 A 396 396
101 Oman 11944 G 396 396
102 Oman 11945 T 396 396
103 Oman 11946 T 396 396
104 Oman 11947 A 396 396
105 Oman 11948 C 396 396
106 Oman 11949 A 396 396
107 Oman 11950 C 396 396
108 Oman 11951 A 396 396
109 Oman 11952 A 396 396
110 Oman 11953 T 396 396
111 Oman 11954 G 396 396
112 Oman 11955 A 396 396
113 Oman 11956 C 396 396
114 Oman 11957 A 396 396
115 Oman 11958 T 396 396
116 Oman 11959 T C 396 395 Ile3898Ile
117 Oman 11960 C 396 396
118 Oman 11961 T 396 396
119 Oman 11962 C 396 396
120 Oman 11963 T 396 396
121 Oman 11964 T 396 396
122 Oman 11965 A 396 396
123 Oman 11966 G 396 396
124 Oman 11967 C 396 396
125 Oman 11968 T 396 396
126 Oman 11969 A 396 396
127 Oman 11970 A 396 396
128 Oman 11971 A 396 396
129 Oman 11972 G 396 396
130 Oman 11973 A 396 396
131 Oman 11974 T 396 396
132 Oman 11975 A 396 396
133 Oman 11976 C 396 396
134 Oman 11977 T 396 396
135 Oman 11978 A 396 396
136 Oman 11979 C 396 396
137 Oman 11980 T 396 396
138 Oman 11981 G 396 396
139 Oman 11982 A 396 396
140 Oman 11983 A 396 396
141 Oman 11984 G 396 396
142 Oman 11985 C 396 396
143 Oman 11986 C 396 396
144 Oman 11987 T 396 396
145 Oman 11988 T 396 396
146 Oman 11989 T 396 396
147 Oman 11990 G 396 396
148 Oman 11991 A 396 396
149 Oman 11992 A 396 396
150 Oman 11993 A 396 396
151 Oman 11994 A 396 396
152 Oman 11995 A 396 396
153 Oman 11996 A 396 396
154 Oman 11997 T 396 396
155 Oman 11998 G 396 396
156 Oman 11999 G 396 396
157 Oman 12000 T 396 396
158 Oman 12001 T 396 396
159 Oman 12002 T 396 396
160 Oman 12003 C 396 396
161 Oman 12004 A 396 396
162 Oman 12005 C 396 396
163 Oman 12006 T 396 396
164 Oman 12007 A 396 396
165 Oman 12008 C 396 396
166 Oman 12009 T 396 396
167 Oman 12010 T 396 396
168 Oman 12011 T 396 396
169 Oman 12012 C 396 396
170 Oman 12013 T 396 396
171 Oman 12014 G 396 396
172 Oman 12015 T 396 396
173 Oman 12016 T 396 396
174 Oman 12017 T 396 396
175 Oman 12018 T 396 396
176 Oman 12019 G 396 396
177 Oman 12020 C 396 396
178 Oman 12021 T 396 396
179 Oman 12022 T 396 396
180 Oman 12023 T 396 396
181 Oman 12024 C 396 396
182 Oman 12025 C 396 396
183 Oman 12026 A 396 396
184 Oman 12027 T 396 396
185 Oman 12028 G 396 396
186 Oman 12029 C 396 396
187 Oman 12030 A 396 396
188 Oman 12031 G 396 396
189 Oman 12032 G 396 396
190 Oman 12033 G 396 396
191 Oman 12034 T 396 396
192 Oman 12035 G 396 396
193 Oman 12036 C 396 396
194 Oman 12037 T 396 396
195 Oman 12038 G 396 396
196 Oman 12039 T 396 396
197 Oman 12040 A 396 396
198 Oman 12041 G 396 396
199 Oman 12042 A 396 396
200 Oman 12043 C 396 396
201 Oman 12044 A 396 396
202 Oman 12045 T 396 396
203 Oman 12046 A 396 396
204 Oman 12047 A 396 396
205 Oman 12048 A 396 396
206 Oman 12049 C 396 396
207 Oman 12050 A 396 396
208 Oman 12051 A 396 396
209 Oman 12052 G 396 396
210 Oman 12053 C 396 396
211 Oman 12054 T 396 396
212 Oman 12055 T 396 396
213 Oman 12056 T 396 396
214 Oman 12057 G 396 396
215 Oman 12058 T 396 396
216 Oman 12059 G 396 396
217 Oman 12060 A 396 396
218 Oman 12061 A 396 396
219 Oman 12062 G 396 396
220 Oman 12063 A 396 396
221 Oman 12064 A 396 396
222 Oman 12065 A 396 396
223 Oman 12066 T 396 396
224 Oman 12067 G 396 396
225 Oman 12068 C 396 396
226 Oman 12069 T 396 396
227 Oman 12070 G 396 396
228 Oman 12071 G 396 396
229 Oman 12072 A 396 396
230 Oman 12073 C T 396 395 Asp3936Asp
231 Oman 12074 A 396 396
232 Oman 12075 A 396 396
233 Oman 12076 C T 396 395 Asn3937Asn
234 Oman 12077 A 396 396
235 Oman 12078 G 396 396
236 Oman 12079 G 396 396
237 Oman 12080 G 396 396
238 Oman 12081 C 396 396
239 Oman 12082 A 396 396
240 Oman 12083 A 396 396
241 Oman 12084 C 396 396
242 Oman 12085 C 396 396
243 Oman 12086 T 396 396
244 Oman 12087 T 396 396
245 Oman 12088 A 396 396
246 Oman 12089 C 396 396
247 Oman 12090 A 396 396
248 Oman 12091 A 396 396