National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15     3                              
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45         3         2                
M   12               2                    
N   9                       1     1      
Q   18                         1          
R   6                                    
S   30                                    
T   12               1                    
V   27                   1             1  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Norway 11843 T 1276 1276
1 Norway 11844 C 1276 1276
2 Norway 11845 T 1276 1276
3 Norway 11846 A 1276 1276
4 Norway 11847 A 1276 1276
5 Norway 11848 A 1276 1276
6 Norway 11849 A 1276 1276
7 Norway 11850 T 1276 1276
8 Norway 11851 G T 1276 1232 Met3862Ile
9 Norway 11852 T 1276 1276
10 Norway 11853 C 1276 1276
11 Norway 11854 A 1276 1276
12 Norway 11855 G 1276 1276
13 Norway 11856 A 1276 1276
14 Norway 11857 T 1276 1276
15 Norway 11858 G 1276 1276
16 Norway 11859 T 1276 1276
17 Norway 11860 A 1276 1276
18 Norway 11861 A 1276 1276
19 Norway 11862 A 1276 1276
20 Norway 11863 G 1276 1276
21 Norway 11864 T 1276 1276
22 Norway 11865 G 1276 1276
23 Norway 11866 C 1276 1276
24 Norway 11867 A 1276 1276
25 Norway 11868 C 1276 1276
26 Norway 11869 A 1276 1276
27 Norway 11870 T 1276 1276
28 Norway 11871 C 1276 1276
29 Norway 11872 A 1276 1276
30 Norway 11873 G 1276 1276
31 Norway 11874 T 1276 1276
32 Norway 11875 A 1276 1276
33 Norway 11876 G 1276 1276
34 Norway 11877 T 1276 1276
35 Norway 11878 C 1276 1276
36 Norway 11879 T 1276 1276
37 Norway 11880 T 1276 1276
38 Norway 11881 A 1276 1276
39 Norway 11882 C 1276 1276
40 Norway 11883 T 1276 1276
41 Norway 11884 C 1276 1276
42 Norway 11885 T 1276 1276
43 Norway 11886 C 1276 1276
44 Norway 11887 A 1276 1276
45 Norway 11888 G 1276 1276
46 Norway 11889 T 1276 1276
47 Norway 11890 T 1277 1277
48 Norway 11891 T 1277 1277
49 Norway 11892 T 1277 1277
50 Norway 11893 G T 1277 1276 Leu3876Phe
51 Norway 11894 C 1277 1277
52 Norway 11895 A 1277 1277
53 Norway 11896 A 1277 1277
54 Norway 11897 C 1277 1277
55 Norway 11898 A 1277 1277
56 Norway 11899 A 1277 1277
57 Norway 11900 C 1277 1277
58 Norway 11901 T 1277 1277
59 Norway 11902 C 1277 1277
60 Norway 11903 A 1277 1277
61 Norway 11904 G 1277 1277
62 Norway 11905 A 1277 1277
63 Norway 11906 G 1277 1277
64 Norway 11907 T 1277 1277
65 Norway 11908 A 1277 1277
66 Norway 11909 G 1277 1277
67 Norway 11910 A 1277 1277
68 Norway 11911 A 1277 1277
69 Norway 11912 T 1277 1277
70 Norway 11913 C 1277 1277
71 Norway 11914 A 1277 1277
72 Norway 11915 T 1277 1277
73 Norway 11916 C 1277 1277
74 Norway 11917 A 1277 1277
75 Norway 11918 T 1277 1277
76 Norway 11919 C 1277 1277
77 Norway 11920 T 1277 1277
78 Norway 11921 A 1277 1277
79 Norway 11922 A 1277 1277
80 Norway 11923 A 1277 1277
81 Norway 11924 T 1277 1277
82 Norway 11925 T 1277 1277
83 Norway 11926 G 1277 1277
84 Norway 11927 T 1277 1277
85 Norway 11928 G 1277 1277
86 Norway 11929 G 1277 1277
87 Norway 11930 G 1277 1277
88 Norway 11931 C 1277 1277
89 Norway 11932 T 1277 1277
90 Norway 11933 C 1277 1277
91 Norway 11934 A 1277 1277
92 Norway 11935 A 1277 1277
93 Norway 11936 T 1277 1277
94 Norway 11937 G 1277 1277
95 Norway 11938 T 1277 1277
96 Norway 11939 G 1277 1277
97 Norway 11940 T 1277 1277
98 Norway 11941 C T 1277 1253 Val3892Val
99 Norway 11942 C 1277 1277
100 Norway 11943 A 1277 1277
101 Norway 11944 G 1277 1277
102 Norway 11945 T 1277 1277
103 Norway 11946 T 1277 1277
104 Norway 11947 A 1277 1277
105 Norway 11948 C 1277 1277
106 Norway 11949 A 1277 1277
107 Norway 11950 C 1277 1277
108 Norway 11951 A 1277 1277
109 Norway 11952 A 1277 1277
110 Norway 11953 T 1277 1277
111 Norway 11954 G 1277 1277
112 Norway 11955 A 1277 1277
113 Norway 11956 C T 1277 1269 Asp3897Asp
114 Norway 11957 A 1277 1277
115 Norway 11958 T 1277 1277
116 Norway 11959 T 1277 1277
117 Norway 11960 C 1277 1277
118 Norway 11961 T 1277 1277
119 Norway 11962 C T 1277 1273 Leu3899Leu
120 Norway 11963 T 1277 1277
121 Norway 11964 T 1277 1277
122 Norway 11965 A 1277 1277
123 Norway 11966 G 1277 1277
124 Norway 11967 C 1277 1277
125 Norway 11968 T 1277 1277
126 Norway 11969 A 1277 1277
127 Norway 11970 A 1277 1277
128 Norway 11971 A 1277 1277
129 Norway 11972 G 1277 1277
130 Norway 11973 A 1277 1277
131 Norway 11974 T 1277 1277
132 Norway 11975 A 1277 1277
133 Norway 11976 C 1277 1277
134 Norway 11977 T 1277 1277
135 Norway 11978 A 1277 1277
136 Norway 11979 C 1277 1277
137 Norway 11980 T 1277 1277
138 Norway 11981 G 1277 1277
139 Norway 11982 A 1277 1277
140 Norway 11983 A 1277 1277
141 Norway 11984 G 1277 1277
142 Norway 11985 C 1277 1277
143 Norway 11986 C 1277 1277
144 Norway 11987 T 1277 1277
145 Norway 11988 T 1277 1277
146 Norway 11989 T 1277 1277
147 Norway 11990 G 1277 1277
148 Norway 11991 A 1277 1277
149 Norway 11992 A 1277 1277
150 Norway 11993 A 1277 1277
151 Norway 11994 A 1277 1277
152 Norway 11995 A 1277 1277
153 Norway 11996 A 1277 1277
154 Norway 11997 T 1277 1277
155 Norway 11998 G 1277 1277
156 Norway 11999 G 1277 1277
157 Norway 12000 T 1277 1277
158 Norway 12001 T 1277 1277
159 Norway 12002 T 1277 1277
160 Norway 12003 C 1277 1277
161 Norway 12004 A 1277 1277
162 Norway 12005 C 1277 1277
163 Norway 12006 T 1277 1277
164 Norway 12007 A 1277 1277
165 Norway 12008 C T 1277 1274 Leu3915Phe
166 Norway 12009 T 1277 1277
167 Norway 12010 T 1277 1277
168 Norway 12011 T 1277 1277
169 Norway 12012 C 1277 1277
170 Norway 12013 T 1277 1277
171 Norway 12014 G 1277 1277
172 Norway 12015 T 1277 1277
173 Norway 12016 T 1277 1277
174 Norway 12017 T 1277 1277
175 Norway 12018 T 1277 1277
176 Norway 12019 G 1277 1277
177 Norway 12020 C 1277 1277
178 Norway 12021 T 1277 1277
179 Norway 12022 T 1277 1277
180 Norway 12023 T 1277 1277
181 Norway 12024 C 1277 1277
182 Norway 12025 C 1277 1277
183 Norway 12026 A 1277 1277
184 Norway 12027 T 1277 1277
185 Norway 12028 G A 1277 1275 Met3921Ile
186 Norway 12029 C 1277 1277
187 Norway 12030 A 1277 1277
188 Norway 12031 G A 1277 1270 Gln3922Gln
189 Norway 12032 G 1277 1277
190 Norway 12033 G 1277 1277
191 Norway 12034 T 1277 1277
192 Norway 12035 G 1277 1277
193 Norway 12036 C 1277 1277
194 Norway 12037 T 1277 1277
195 Norway 12038 G T 1277 1276 Val3925Leu
196 Norway 12039 T 1277 1277
197 Norway 12040 A 1277 1277
198 Norway 12041 G 1277 1277
199 Norway 12042 A 1277 1277
200 Norway 12043 C T 1277 1255 Asp3926Asp
201 Norway 12044 A 1277 1277
202 Norway 12045 T 1277 1277
203 Norway 12046 A 1277 1277
204 Norway 12047 A 1277 1277
205 Norway 12048 A 1277 1277
206 Norway 12049 C T 1277 1276 Asn3928Asn
207 Norway 12050 A 1277 1277
208 Norway 12051 A 1277 1277
209 Norway 12052 G 1277 1277
210 Norway 12053 C T 1277 1273 Leu3930Phe
211 Norway 12054 T 1277 1277
212 Norway 12055 T 1277 1277
213 Norway 12056 T 1277 1277
214 Norway 12057 G 1277 1277
215 Norway 12058 T 1277 1277
216 Norway 12059 G 1277 1277
217 Norway 12060 A 1277 1277
218 Norway 12061 A 1277 1277
219 Norway 12062 G 1277 1277
220 Norway 12063 A 1277 1277
221 Norway 12064 A 1277 1277
222 Norway 12065 A 1277 1277
223 Norway 12066 T 1277 1277
224 Norway 12067 G 1277 1277
225 Norway 12068 C T 1277 1276 Leu3935Leu
226 Norway 12069 T 1277 1277
227 Norway 12070 G 1277 1277
228 Norway 12071 G 1277 1277
229 Norway 12072 A 1277 1277
230 Norway 12073 C T 1277 1276 Asp3936Asp
231 Norway 12074 A 1277 1277
232 Norway 12075 A G 1277 1273 Asn3937Ser
233 Norway 12076 C 1277 1277
234 Norway 12077 A 1277 1277
235 Norway 12078 G 1277 1277
236 Norway 12079 G 1277 1277
237 Norway 12080 G 1277 1277
238 Norway 12081 C 1277 1277
239 Norway 12082 A 1277 1277
240 Norway 12083 A 1277 1277
241 Norway 12084 C T 1277 1274 Thr3940Ile
242 Norway 12085 C 1277 1277
243 Norway 12086 T 1277 1277
244 Norway 12087 T 1277 1277
245 Norway 12088 A 1277 1277
246 Norway 12089 C 1277 1277
247 Norway 12090 A 1277 1277
248 Norway 12091 A 1277 1277