National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   250                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45         1                          
M   12                       1            
N   9                       1            
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 North_Macedonia 11843 T 82 82
1 North_Macedonia 11844 C 82 82
2 North_Macedonia 11845 T 82 82
3 North_Macedonia 11846 A 82 82
4 North_Macedonia 11847 A 82 82
5 North_Macedonia 11848 A 82 82
6 North_Macedonia 11849 A 82 82
7 North_Macedonia 11850 T 82 82
8 North_Macedonia 11851 G 82 82
9 North_Macedonia 11852 T 82 82
10 North_Macedonia 11853 C 82 82
11 North_Macedonia 11854 A 82 82
12 North_Macedonia 11855 G 82 82
13 North_Macedonia 11856 A 82 82
14 North_Macedonia 11857 T 82 82
15 North_Macedonia 11858 G 82 82
16 North_Macedonia 11859 T 82 82
17 North_Macedonia 11860 A 82 82
18 North_Macedonia 11861 A 82 82
19 North_Macedonia 11862 A 82 82
20 North_Macedonia 11863 G 82 82
21 North_Macedonia 11864 T 82 82
22 North_Macedonia 11865 G 82 82
23 North_Macedonia 11866 C 82 82
24 North_Macedonia 11867 A 82 82
25 North_Macedonia 11868 C 82 82
26 North_Macedonia 11869 A 82 82
27 North_Macedonia 11870 T 82 82
28 North_Macedonia 11871 C 82 82
29 North_Macedonia 11872 A 82 82
30 North_Macedonia 11873 G 82 82
31 North_Macedonia 11874 T 82 82
32 North_Macedonia 11875 A 82 82
33 North_Macedonia 11876 G 82 82
34 North_Macedonia 11877 T 82 82
35 North_Macedonia 11878 C 82 82
36 North_Macedonia 11879 T 82 82
37 North_Macedonia 11880 T 82 82
38 North_Macedonia 11881 A 82 82
39 North_Macedonia 11882 C 82 82
40 North_Macedonia 11883 T 82 82
41 North_Macedonia 11884 C 82 82
42 North_Macedonia 11885 T 82 82
43 North_Macedonia 11886 C 82 82
44 North_Macedonia 11887 A 82 82
45 North_Macedonia 11888 G 82 82
46 North_Macedonia 11889 T 82 82
47 North_Macedonia 11890 T 82 82
48 North_Macedonia 11891 T 82 82
49 North_Macedonia 11892 T 82 82
50 North_Macedonia 11893 G 82 82
51 North_Macedonia 11894 C 82 82
52 North_Macedonia 11895 A 82 82
53 North_Macedonia 11896 A 82 82
54 North_Macedonia 11897 C 82 82
55 North_Macedonia 11898 A 82 82
56 North_Macedonia 11899 A 82 82
57 North_Macedonia 11900 C 82 82
58 North_Macedonia 11901 T 82 82
59 North_Macedonia 11902 C 82 82
60 North_Macedonia 11903 A 82 82
61 North_Macedonia 11904 G 82 82
62 North_Macedonia 11905 A 82 82
63 North_Macedonia 11906 G 82 82
64 North_Macedonia 11907 T 82 82
65 North_Macedonia 11908 A 82 82
66 North_Macedonia 11909 G 82 82
67 North_Macedonia 11910 A 82 82
68 North_Macedonia 11911 A 82 82
69 North_Macedonia 11912 T 82 82
70 North_Macedonia 11913 C 82 82
71 North_Macedonia 11914 A 82 82
72 North_Macedonia 11915 T 82 82
73 North_Macedonia 11916 C 82 82
74 North_Macedonia 11917 A 82 82
75 North_Macedonia 11918 T 82 82
76 North_Macedonia 11919 C 82 82
77 North_Macedonia 11920 T 82 82
78 North_Macedonia 11921 A 82 82
79 North_Macedonia 11922 A 82 82
80 North_Macedonia 11923 A 82 82
81 North_Macedonia 11924 T 82 82
82 North_Macedonia 11925 T 82 82
83 North_Macedonia 11926 G 82 82
84 North_Macedonia 11927 T 82 82
85 North_Macedonia 11928 G 82 82
86 North_Macedonia 11929 G 82 82
87 North_Macedonia 11930 G 82 82
88 North_Macedonia 11931 C 82 82
89 North_Macedonia 11932 T 82 82
90 North_Macedonia 11933 C 82 82
91 North_Macedonia 11934 A 82 82
92 North_Macedonia 11935 A 82 82
93 North_Macedonia 11936 T 82 82
94 North_Macedonia 11937 G 82 82
95 North_Macedonia 11938 T 82 82
96 North_Macedonia 11939 G 82 82
97 North_Macedonia 11940 T 82 82
98 North_Macedonia 11941 C 82 82
99 North_Macedonia 11942 C 82 82
100 North_Macedonia 11943 A 82 82
101 North_Macedonia 11944 G 82 82
102 North_Macedonia 11945 T 82 82
103 North_Macedonia 11946 T 82 82
104 North_Macedonia 11947 A 82 82
105 North_Macedonia 11948 C 82 82
106 North_Macedonia 11949 A 82 82
107 North_Macedonia 11950 C 82 82
108 North_Macedonia 11951 A 82 82
109 North_Macedonia 11952 A 82 82
110 North_Macedonia 11953 T 82 82
111 North_Macedonia 11954 G 82 82
112 North_Macedonia 11955 A 82 82
113 North_Macedonia 11956 C 82 82
114 North_Macedonia 11957 A 82 82
115 North_Macedonia 11958 T 82 82
116 North_Macedonia 11959 T 82 82
117 North_Macedonia 11960 C 82 82
118 North_Macedonia 11961 T 82 82
119 North_Macedonia 11962 C 82 82
120 North_Macedonia 11963 T 82 82
121 North_Macedonia 11964 T 82 82
122 North_Macedonia 11965 A 82 82
123 North_Macedonia 11966 G 82 82
124 North_Macedonia 11967 C 82 82
125 North_Macedonia 11968 T 82 82
126 North_Macedonia 11969 A 82 82
127 North_Macedonia 11970 A 82 82
128 North_Macedonia 11971 A 82 82
129 North_Macedonia 11972 G 82 82
130 North_Macedonia 11973 A 82 82
131 North_Macedonia 11974 T 82 82
132 North_Macedonia 11975 A 82 82
133 North_Macedonia 11976 C 82 82
134 North_Macedonia 11977 T 82 82
135 North_Macedonia 11978 A 82 82
136 North_Macedonia 11979 C 82 82
137 North_Macedonia 11980 T 82 82
138 North_Macedonia 11981 G 82 82
139 North_Macedonia 11982 A 82 82
140 North_Macedonia 11983 A 82 82
141 North_Macedonia 11984 G 82 82
142 North_Macedonia 11985 C 82 82
143 North_Macedonia 11986 C 82 82
144 North_Macedonia 11987 T 82 82
145 North_Macedonia 11988 T 82 82
146 North_Macedonia 11989 T 82 82
147 North_Macedonia 11990 G 82 82
148 North_Macedonia 11990 GAAAAAA GAAAAAAA 82 80
149 North_Macedonia 11991 A 82 82
150 North_Macedonia 11992 A 82 82
151 North_Macedonia 11993 A 82 82
152 North_Macedonia 11994 A 82 82
153 North_Macedonia 11995 A 82 82
154 North_Macedonia 11996 A 82 82
155 North_Macedonia 11997 T 82 82
156 North_Macedonia 11998 G 82 82
157 North_Macedonia 11999 G 82 82
158 North_Macedonia 12000 T 82 82
159 North_Macedonia 12001 T 82 82
160 North_Macedonia 12002 T 82 82
161 North_Macedonia 12003 C 82 82
162 North_Macedonia 12004 A 82 82
163 North_Macedonia 12005 C 82 82
164 North_Macedonia 12006 T 82 82
165 North_Macedonia 12007 A 82 82
166 North_Macedonia 12008 C 82 82
167 North_Macedonia 12009 T 82 82
168 North_Macedonia 12010 T 82 82
169 North_Macedonia 12011 T 82 82
170 North_Macedonia 12012 C 82 82
171 North_Macedonia 12013 T 82 82
172 North_Macedonia 12014 G 82 82
173 North_Macedonia 12015 T 82 82
174 North_Macedonia 12016 T 82 82
175 North_Macedonia 12017 T 82 82
176 North_Macedonia 12018 T 82 82
177 North_Macedonia 12019 G 82 82
178 North_Macedonia 12020 C 82 82
179 North_Macedonia 12021 T 82 82
180 North_Macedonia 12022 T 82 82
181 North_Macedonia 12023 T 82 82
182 North_Macedonia 12024 C 82 82
183 North_Macedonia 12025 C 82 82
184 North_Macedonia 12026 A 82 82
185 North_Macedonia 12027 T 82 82
186 North_Macedonia 12028 G 82 82
187 North_Macedonia 12029 C 82 82
188 North_Macedonia 12030 A 82 82
189 North_Macedonia 12031 G 82 82
190 North_Macedonia 12032 G 82 82
191 North_Macedonia 12033 G 82 82
192 North_Macedonia 12034 T 82 82
193 North_Macedonia 12035 G 82 82
194 North_Macedonia 12036 C 82 82
195 North_Macedonia 12037 T 82 82
196 North_Macedonia 12038 G 82 82
197 North_Macedonia 12039 T 82 82
198 North_Macedonia 12040 A 82 82
199 North_Macedonia 12041 G 82 82
200 North_Macedonia 12042 A 82 82
201 North_Macedonia 12043 C 82 82
202 North_Macedonia 12044 A 82 82
203 North_Macedonia 12045 T 82 82
204 North_Macedonia 12046 A 82 82
205 North_Macedonia 12047 A 82 82
206 North_Macedonia 12048 A 82 82
207 North_Macedonia 12049 C 82 82
208 North_Macedonia 12050 A 82 82
209 North_Macedonia 12051 A 82 82
210 North_Macedonia 12052 G 82 82
211 North_Macedonia 12053 C T 82 81 Leu3930Phe
212 North_Macedonia 12054 T 82 82
213 North_Macedonia 12055 T 82 82
214 North_Macedonia 12056 T 82 82
215 North_Macedonia 12057 G 82 82
216 North_Macedonia 12058 T 82 82
217 North_Macedonia 12059 G 82 82
218 North_Macedonia 12060 A 82 82
219 North_Macedonia 12061 A 82 82
220 North_Macedonia 12062 G 82 82
221 North_Macedonia 12063 A 82 82
222 North_Macedonia 12064 A 82 82
223 North_Macedonia 12065 A 82 82
224 North_Macedonia 12066 T 82 82
225 North_Macedonia 12067 G 82 82
226 North_Macedonia 12068 C 82 82
227 North_Macedonia 12069 T 82 82
228 North_Macedonia 12070 G 82 82
229 North_Macedonia 12071 G 82 82
230 North_Macedonia 12072 A 82 82
231 North_Macedonia 12073 C 82 82
232 North_Macedonia 12074 A 82 82
233 North_Macedonia 12075 A 82 82
234 North_Macedonia 12076 C T 82 81 Asn3937Asn
235 North_Macedonia 12077 A 82 82
236 North_Macedonia 12078 G 82 82
237 North_Macedonia 12079 G 82 82
238 North_Macedonia 12080 G 82 82
239 North_Macedonia 12081 C 82 82
240 North_Macedonia 12082 A 82 82
241 North_Macedonia 12083 A 82 82
242 North_Macedonia 12084 C 82 82
243 North_Macedonia 12085 C 82 82
244 North_Macedonia 12086 T 82 82
245 North_Macedonia 12087 T 82 82
246 North_Macedonia 12088 A 82 82
247 North_Macedonia 12089 C 82 82
248 North_Macedonia 12090 A 82 82
249 North_Macedonia 12091 A 82 82