National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15     1                              
E   15                 1                  
F   3                                    
G   3                           1        
H   3                                    
I   6                                    
K   18                                    
L   45         1         3 1              
M   12               3                    
N   9                       1            
Q   18                                    
R   6                                    
S   30                   1                
T   12                                    
V   27                                 1  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 New_Zealand 11843 T 1103 1103
1 New_Zealand 11844 C 1103 1103
2 New_Zealand 11845 T 1103 1103
3 New_Zealand 11846 A 1103 1103
4 New_Zealand 11847 A 1103 1103
5 New_Zealand 11848 A 1103 1103
6 New_Zealand 11849 A 1103 1103
7 New_Zealand 11850 T 1103 1103
8 New_Zealand 11851 G T,C 1103 1100 Met3862Ile-p.Met3862Ile
9 New_Zealand 11852 T 1103 1103
10 New_Zealand 11853 C 1103 1103
11 New_Zealand 11854 A 1103 1103
12 New_Zealand 11855 G 1103 1103
13 New_Zealand 11856 A 1103 1103
14 New_Zealand 11857 T 1103 1103
15 New_Zealand 11858 G 1103 1103
16 New_Zealand 11859 T 1103 1103
17 New_Zealand 11860 A 1103 1103
18 New_Zealand 11861 A 1103 1103
19 New_Zealand 11862 A 1103 1103
20 New_Zealand 11863 G 1103 1103
21 New_Zealand 11864 T 1103 1103
22 New_Zealand 11865 G 1103 1103
23 New_Zealand 11866 C 1103 1103
24 New_Zealand 11867 A 1103 1103
25 New_Zealand 11868 C 1103 1103
26 New_Zealand 11869 A 1103 1103
27 New_Zealand 11870 T 1103 1103
28 New_Zealand 11871 C 1103 1103
29 New_Zealand 11872 A 1103 1103
30 New_Zealand 11873 G 1103 1103
31 New_Zealand 11874 T 1103 1103
32 New_Zealand 11875 A 1103 1103
33 New_Zealand 11876 G 1103 1103
34 New_Zealand 11877 T 1103 1103
35 New_Zealand 11878 C T 1103 1101 Val3871Val
36 New_Zealand 11879 T 1103 1103
37 New_Zealand 11880 T 1103 1103
38 New_Zealand 11881 A 1103 1103
39 New_Zealand 11882 C 1103 1103
40 New_Zealand 11883 T 1103 1103
41 New_Zealand 11884 C T 1103 1101 Leu3873Leu
42 New_Zealand 11885 T 1103 1103
43 New_Zealand 11886 C 1103 1103
44 New_Zealand 11887 A 1103 1103
45 New_Zealand 11888 G 1103 1103
46 New_Zealand 11889 T 1103 1103
47 New_Zealand 11890 T 1103 1103
48 New_Zealand 11891 T 1103 1103
49 New_Zealand 11892 T 1103 1103
50 New_Zealand 11893 G 1103 1103
51 New_Zealand 11894 C 1103 1103
52 New_Zealand 11895 A 1103 1103
53 New_Zealand 11896 A 1103 1103
54 New_Zealand 11897 C 1103 1103
55 New_Zealand 11898 A 1103 1103
56 New_Zealand 11899 A 1103 1103
57 New_Zealand 11900 C 1103 1103
58 New_Zealand 11901 T 1103 1103
59 New_Zealand 11902 C T 1103 1101 Leu3879Leu
60 New_Zealand 11903 A 1103 1103
61 New_Zealand 11904 G 1103 1103
62 New_Zealand 11905 A 1103 1103
63 New_Zealand 11906 G 1103 1103
64 New_Zealand 11907 T 1103 1103
65 New_Zealand 11908 A 1103 1103
66 New_Zealand 11909 G 1103 1103
67 New_Zealand 11910 A 1103 1103
68 New_Zealand 11911 A 1103 1103
69 New_Zealand 11912 T 1103 1103
70 New_Zealand 11913 C 1103 1103
71 New_Zealand 11914 A 1103 1103
72 New_Zealand 11915 T 1103 1103
73 New_Zealand 11916 C T 1103 1097 Ser3884Leu
74 New_Zealand 11917 A 1103 1103
75 New_Zealand 11918 T 1103 1103
76 New_Zealand 11919 C 1103 1103
77 New_Zealand 11920 T 1103 1103
78 New_Zealand 11921 A 1103 1103
79 New_Zealand 11922 A 1103 1103
80 New_Zealand 11923 A 1103 1103
81 New_Zealand 11924 T 1103 1103
82 New_Zealand 11925 T 1103 1103
83 New_Zealand 11926 G 1103 1103
84 New_Zealand 11927 T 1103 1103
85 New_Zealand 11928 G 1103 1103
86 New_Zealand 11929 G 1103 1103
87 New_Zealand 11930 G 1103 1103
88 New_Zealand 11931 C 1103 1103
89 New_Zealand 11932 T 1103 1103
90 New_Zealand 11933 C 1103 1103
91 New_Zealand 11934 A 1103 1103
92 New_Zealand 11935 A 1103 1103
93 New_Zealand 11936 T 1103 1103
94 New_Zealand 11937 G 1103 1103
95 New_Zealand 11938 T 1103 1103
96 New_Zealand 11939 G 1103 1103
97 New_Zealand 11940 T 1103 1103
98 New_Zealand 11941 C 1103 1103
99 New_Zealand 11942 C 1103 1103
100 New_Zealand 11943 A 1103 1103
101 New_Zealand 11944 G 1103 1103
102 New_Zealand 11945 T 1103 1103
103 New_Zealand 11946 T 1103 1103
104 New_Zealand 11947 A 1103 1103
105 New_Zealand 11948 C 1103 1103
106 New_Zealand 11949 A 1103 1103
107 New_Zealand 11950 C 1103 1103
108 New_Zealand 11951 A 1103 1103
109 New_Zealand 11952 A 1103 1103
110 New_Zealand 11953 T 1103 1103
111 New_Zealand 11954 G 1103 1103
112 New_Zealand 11955 A 1103 1103
113 New_Zealand 11956 C 1103 1103
114 New_Zealand 11957 A 1103 1103
115 New_Zealand 11958 T 1103 1103
116 New_Zealand 11959 T 1103 1103
117 New_Zealand 11960 C 1103 1103
118 New_Zealand 11961 T 1103 1103
119 New_Zealand 11962 C 1103 1103
120 New_Zealand 11963 T 1103 1103
121 New_Zealand 11964 T 1103 1103
122 New_Zealand 11965 A 1103 1103
123 New_Zealand 11966 G 1103 1103
124 New_Zealand 11967 C 1103 1103
125 New_Zealand 11968 T 1103 1103
126 New_Zealand 11969 A 1103 1103
127 New_Zealand 11970 A 1103 1103
128 New_Zealand 11971 A 1103 1103
129 New_Zealand 11972 G 1103 1103
130 New_Zealand 11973 A 1103 1103
131 New_Zealand 11974 T 1103 1103
132 New_Zealand 11975 A 1103 1103
133 New_Zealand 11976 C 1103 1103
134 New_Zealand 11977 T 1103 1103
135 New_Zealand 11978 A 1103 1103
136 New_Zealand 11979 C 1103 1103
137 New_Zealand 11980 T 1104 1104
138 New_Zealand 11981 G 1104 1104
139 New_Zealand 11982 A 1104 1104
140 New_Zealand 11983 A 1104 1104
141 New_Zealand 11984 G 1104 1104
142 New_Zealand 11985 C 1104 1104
143 New_Zealand 11986 C 1104 1104
144 New_Zealand 11987 T 1104 1104
145 New_Zealand 11988 T 1104 1104
146 New_Zealand 11989 T 1104 1104
147 New_Zealand 11990 G 1104 1104
148 New_Zealand 11991 A 1104 1104
149 New_Zealand 11992 A 1104 1104
150 New_Zealand 11993 A 1104 1104
151 New_Zealand 11994 A 1104 1104
152 New_Zealand 11995 A 1104 1104
153 New_Zealand 11996 A 1104 1104
154 New_Zealand 11997 T 1104 1104
155 New_Zealand 11998 G 1104 1104
156 New_Zealand 11999 G 1104 1104
157 New_Zealand 12000 T 1104 1104
158 New_Zealand 12001 T 1104 1104
159 New_Zealand 12002 T 1104 1104
160 New_Zealand 12003 C 1104 1104
161 New_Zealand 12004 A 1104 1104
162 New_Zealand 12005 C 1104 1104
163 New_Zealand 12006 T 1104 1104
164 New_Zealand 12007 A 1104 1104
165 New_Zealand 12008 C 1104 1104
166 New_Zealand 12009 T 1104 1104
167 New_Zealand 12010 T 1104 1104
168 New_Zealand 12011 T 1104 1104
169 New_Zealand 12012 C 1104 1104
170 New_Zealand 12013 T 1104 1104
171 New_Zealand 12014 G 1104 1104
172 New_Zealand 12015 T 1104 1104
173 New_Zealand 12016 T 1104 1104
174 New_Zealand 12017 T 1104 1104
175 New_Zealand 12018 T 1104 1104
176 New_Zealand 12019 G 1104 1104
177 New_Zealand 12020 C T 1104 1103 Leu3919Phe
178 New_Zealand 12021 T 1104 1104
179 New_Zealand 12022 T 1104 1104
180 New_Zealand 12023 T 1104 1104
181 New_Zealand 12024 C 1104 1104
182 New_Zealand 12025 C 1104 1104
183 New_Zealand 12026 A 1104 1104
184 New_Zealand 12027 T 1104 1104
185 New_Zealand 12028 G 1104 1104
186 New_Zealand 12029 C 1104 1104
187 New_Zealand 12030 A 1104 1104
188 New_Zealand 12031 G 1104 1104
189 New_Zealand 12032 G C 1104 1102 Gly3923Arg
190 New_Zealand 12033 G 1104 1104
191 New_Zealand 12034 T 1104 1104
192 New_Zealand 12035 G 1104 1104
193 New_Zealand 12036 C 1104 1104
194 New_Zealand 12037 T 1104 1104
195 New_Zealand 12038 G 1104 1104
196 New_Zealand 12039 T 1104 1104
197 New_Zealand 12040 A 1104 1104
198 New_Zealand 12041 G 1104 1104
199 New_Zealand 12042 A 1104 1104
200 New_Zealand 12043 C 1104 1104
201 New_Zealand 12044 A 1104 1103
202 New_Zealand 12045 T 1104 1104
203 New_Zealand 12046 A 1104 1104
204 New_Zealand 12047 A 1104 1104
205 New_Zealand 12048 A 1104 1104
206 New_Zealand 12049 C 1104 1104
207 New_Zealand 12050 A 1104 1104
208 New_Zealand 12051 A 1104 1104
209 New_Zealand 12052 G 1104 1104
210 New_Zealand 12053 C 1104 1104
211 New_Zealand 12054 T 1104 1104
212 New_Zealand 12055 T 1104 1104
213 New_Zealand 12056 T 1104 1104
214 New_Zealand 12057 G 1104 1104
215 New_Zealand 12058 T 1104 1104
216 New_Zealand 12059 G A 1104 1103 Glu3932Lys
217 New_Zealand 12060 A 1104 1104
218 New_Zealand 12061 A 1104 1104
219 New_Zealand 12062 G 1104 1104
220 New_Zealand 12063 A 1104 1104
221 New_Zealand 12064 A 1104 1104
222 New_Zealand 12065 A 1104 1104
223 New_Zealand 12066 T 1104 1104
224 New_Zealand 12067 G T 1104 1101 Met3934Ile
225 New_Zealand 12068 C T,A 1104 1102 Leu3935Met-p.Leu3935Leu
226 New_Zealand 12069 T 1104 1104
227 New_Zealand 12070 G 1104 1104
228 New_Zealand 12071 G 1104 1104
229 New_Zealand 12072 A 1104 1104
230 New_Zealand 12073 C T 1104 1101 Asp3936Asp
231 New_Zealand 12074 A 1104 1104
232 New_Zealand 12075 A 1104 1104
233 New_Zealand 12076 C T 1104 1102 Asn3937Asn
234 New_Zealand 12077 A 1104 1104
235 New_Zealand 12078 G 1104 1104
236 New_Zealand 12079 G 1103 1103
237 New_Zealand 12080 G 1103 1103
238 New_Zealand 12081 C 1103 1103
239 New_Zealand 12082 A 1103 1103
240 New_Zealand 12083 A 1103 1103
241 New_Zealand 12084 C 1103 1103
242 New_Zealand 12085 C 1103 1103
243 New_Zealand 12086 T 1103 1103
244 New_Zealand 12087 T 1103 1103
245 New_Zealand 12088 A 1103 1103
246 New_Zealand 12089 C 1103 1103
247 New_Zealand 12090 A 1103 1103
248 New_Zealand 12091 A 1103 1103