National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W Y
-   249                                      
?                                          
A   15 2                                    
C   9   1                                 1
D   15     3                 1              
E   15       2                              
F   3                                      
G   3                                      
H   3             1                        
I   6                                      
K   18                       1              
L   45         2     1   4                  
M   12               2               1      
N   9                       2     1        
Q   18                         1            
R   6                                      
S   30         1         2         1        
T   12               1       1       1      
V   27                                 2    
W   3                                      
Y                                          

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Netherlands 11843 T 5874 5874
1 Netherlands 11844 C 5874 5874
2 Netherlands 11845 T 5874 5874
3 Netherlands 11846 A 5874 5874
4 Netherlands 11847 A 5874 5874
5 Netherlands 11848 A 5874 5874
6 Netherlands 11849 A 5874 5874
7 Netherlands 11850 T 5874 5874
8 Netherlands 11851 G T 5874 5845 Met3862Ile
9 Netherlands 11852 T 5874 5874
10 Netherlands 11853 C 5874 5874
11 Netherlands 11854 A 5874 5874
12 Netherlands 11855 G 5874 5874
13 Netherlands 11856 A 5874 5874
14 Netherlands 11857 T 5874 5874
15 Netherlands 11858 G 5874 5874
16 Netherlands 11859 T 5874 5874
17 Netherlands 11860 A 5874 5874
18 Netherlands 11861 A 5874 5874
19 Netherlands 11862 A 5874 5874
20 Netherlands 11863 G T 5874 5873 Lys3866Asn
21 Netherlands 11864 T 5874 5874
22 Netherlands 11865 G 5874 5874
23 Netherlands 11866 C T 5874 5873 Cys3867Cys
24 Netherlands 11867 A 5874 5874
25 Netherlands 11868 C 5874 5874
26 Netherlands 11869 A 5874 5874
27 Netherlands 11870 T 5874 5874
28 Netherlands 11871 C 5874 5874
29 Netherlands 11872 A 5874 5874
30 Netherlands 11873 G 5874 5874
31 Netherlands 11874 T 5874 5874
32 Netherlands 11875 A 5874 5874
33 Netherlands 11876 G 5874 5874
34 Netherlands 11877 T 5874 5874
35 Netherlands 11878 C T 5874 5867 Val3871Val
36 Netherlands 11879 T 5874 5874
37 Netherlands 11880 T 5874 5874
38 Netherlands 11881 A 5874 5874
39 Netherlands 11882 C 5874 5874
40 Netherlands 11883 T 5874 5874
41 Netherlands 11884 C 5874 5874
42 Netherlands 11885 T 5874 5874
43 Netherlands 11886 C T 5874 5873 Ser3874Leu
44 Netherlands 11887 A 5874 5874
45 Netherlands 11888 G 5874 5874
46 Netherlands 11889 T 5874 5874
47 Netherlands 11890 T 5874 5874
48 Netherlands 11891 T 5874 5874
49 Netherlands 11892 T 5874 5873
50 Netherlands 11893 G 5874 5873
51 Netherlands 11894 C 5874 5874
52 Netherlands 11895 A 5874 5874
53 Netherlands 11896 A 5874 5874
54 Netherlands 11897 C 5874 5874
55 Netherlands 11898 A 5874 5874
56 Netherlands 11899 A 5874 5874
57 Netherlands 11900 C 5874 5874
58 Netherlands 11901 T 5874 5874
59 Netherlands 11902 C 5874 5874
60 Netherlands 11903 A 5874 5874
61 Netherlands 11904 G 5874 5874
62 Netherlands 11905 A 5874 5874
63 Netherlands 11906 G 5874 5874
64 Netherlands 11907 T 5874 5874
65 Netherlands 11908 A 5874 5874
66 Netherlands 11909 G 5874 5874
67 Netherlands 11910 A 5874 5874
68 Netherlands 11911 A G 5874 5873 Glu3882Glu
69 Netherlands 11912 T 5874 5874
70 Netherlands 11913 C 5874 5874
71 Netherlands 11914 A 5874 5874
72 Netherlands 11915 T 5874 5874
73 Netherlands 11916 C T 5874 5871 Ser3884Leu
74 Netherlands 11917 A 5874 5874
75 Netherlands 11918 T 5874 5874
76 Netherlands 11919 C T 5874 5873 Ser3885Phe
77 Netherlands 11920 T 5874 5874
78 Netherlands 11921 A 5874 5874
79 Netherlands 11922 A 5874 5874
80 Netherlands 11923 A 5874 5874
81 Netherlands 11924 T 5874 5874
82 Netherlands 11925 T 5874 5874
83 Netherlands 11926 G 5874 5874
84 Netherlands 11927 T 5874 5874
85 Netherlands 11928 G 5875 5875
86 Netherlands 11929 G 5875 5875
87 Netherlands 11930 G 5875 5875
88 Netherlands 11931 C 5875 5875
89 Netherlands 11932 T 5875 5875
90 Netherlands 11933 C 5875 5875
91 Netherlands 11934 A 5875 5875
92 Netherlands 11935 A 5875 5875
93 Netherlands 11936 T 5875 5875
94 Netherlands 11937 G 5875 5875
95 Netherlands 11938 T 5875 5875
96 Netherlands 11939 G 5875 5875
97 Netherlands 11940 T 5875 5875
98 Netherlands 11941 C T 5875 5871 Val3892Val
99 Netherlands 11942 C 5875 5875
100 Netherlands 11943 A 5875 5875
101 Netherlands 11944 G 5875 5875
102 Netherlands 11945 T 5875 5875
103 Netherlands 11946 T 5875 5875
104 Netherlands 11947 A 5875 5875
105 Netherlands 11948 C 5875 5875
106 Netherlands 11949 A 5875 5875
107 Netherlands 11950 C T 5875 5874 His3895His
108 Netherlands 11951 A 5875 5875
109 Netherlands 11952 A 5875 5875
110 Netherlands 11953 T 5875 5875
111 Netherlands 11954 G 5875 5875
112 Netherlands 11955 A 5875 5875
113 Netherlands 11956 C T 5875 5837 Asp3897Asp
114 Netherlands 11957 A 5875 5875
115 Netherlands 11958 T 5875 5875
116 Netherlands 11959 T 5875 5875
117 Netherlands 11960 C A 5875 5873 Leu3899Ile
118 Netherlands 11961 T 5875 5875
119 Netherlands 11962 C T 5875 5870 Leu3899Leu
120 Netherlands 11963 T 5875 5875
121 Netherlands 11964 T 5875 5875
122 Netherlands 11965 A 5875 5875
123 Netherlands 11966 G 5875 5875
124 Netherlands 11967 C 5875 5875
125 Netherlands 11968 T 5875 5875
126 Netherlands 11969 A 5875 5875
127 Netherlands 11970 A 5875 5875
128 Netherlands 11971 A 5875 5875
129 Netherlands 11972 G 5875 5875
130 Netherlands 11973 A 5875 5875
131 Netherlands 11974 T 5875 5875
132 Netherlands 11975 A 5875 5875
133 Netherlands 11976 C A 5875 5874 Thr3904Asn
134 Netherlands 11977 T 5875 5875
135 Netherlands 11978 A 5875 5875
136 Netherlands 11979 C 5875 5875
137 Netherlands 11980 T 5875 5875
138 Netherlands 11981 G 5875 5875
139 Netherlands 11982 A 5875 5875
140 Netherlands 11983 A 5875 5875
141 Netherlands 11984 G 5875 5875
142 Netherlands 11985 C 5875 5875
143 Netherlands 11986 C T,A 5875 5864 Ala3907Ala-p.Ala3907Ala
144 Netherlands 11987 T 5875 5875
145 Netherlands 11988 T 5875 5875
146 Netherlands 11989 T 5875 5875
147 Netherlands 11990 G 5875 5875
148 Netherlands 11991 A 5875 5875
149 Netherlands 11992 A 5875 5875
150 Netherlands 11993 A 5875 5875
151 Netherlands 11994 A 5875 5875
152 Netherlands 11995 A 5875 5875
153 Netherlands 11996 A 5875 5875
154 Netherlands 11997 T 5875 5875
155 Netherlands 11998 G 5875 5875
156 Netherlands 11999 G 5875 5875
157 Netherlands 12000 T 5875 5875
158 Netherlands 12001 T 5875 5875
159 Netherlands 12002 T 5875 5875
160 Netherlands 12003 C 5875 5875
161 Netherlands 12004 A 5875 5875
162 Netherlands 12005 C 5875 5875
163 Netherlands 12006 T 5875 5875
164 Netherlands 12007 A 5875 5875
165 Netherlands 12008 C 5875 5875
166 Netherlands 12009 T 5875 5875
167 Netherlands 12010 T 5875 5875
168 Netherlands 12011 T 5875 5875
169 Netherlands 12012 C 5875 5875
170 Netherlands 12013 T 5875 5875
171 Netherlands 12014 G 5875 5875
172 Netherlands 12015 T 5875 5875
173 Netherlands 12016 T 5875 5875
174 Netherlands 12017 T 5875 5875
175 Netherlands 12018 T 5875 5875
176 Netherlands 12019 G 5875 5875
177 Netherlands 12020 C T 5875 5874 Leu3919Phe
178 Netherlands 12021 T 5875 5875
179 Netherlands 12022 T 5875 5875
180 Netherlands 12023 T 5875 5875
181 Netherlands 12024 C 5875 5875
182 Netherlands 12025 C T 5875 5874 Ser3920Ser
183 Netherlands 12026 A 5875 5875
184 Netherlands 12027 T 5875 5875
185 Netherlands 12028 G 5875 5875
186 Netherlands 12029 C 5875 5875
187 Netherlands 12030 A 5875 5875
188 Netherlands 12031 G A 5875 5874 Gln3922Gln
189 Netherlands 12032 G 5875 5875
190 Netherlands 12033 G 5875 5875
191 Netherlands 12034 T 5875 5875
192 Netherlands 12035 G 5875 5875
193 Netherlands 12036 C 5875 5875
194 Netherlands 12037 T 5875 5875
195 Netherlands 12038 G 5875 5875
196 Netherlands 12039 T 5875 5875
197 Netherlands 12040 A 5875 5875
198 Netherlands 12041 G 5875 5875
199 Netherlands 12042 A 5881 5881
200 Netherlands 12043 C T 5881 5872 Asp3926Asp
201 Netherlands 12044 A 5883 5883
202 Netherlands 12045 T 5883 5883
203 Netherlands 12046 A 5883 5883
204 Netherlands 12047 A 5883 5883
205 Netherlands 12048 A 5883 5883
206 Netherlands 12049 C T 5883 5882 Asn3928Asn
207 Netherlands 12050 A 5883 5883
208 Netherlands 12051 A 5883 5883
209 Netherlands 12052 G 5883 5883
210 Netherlands 12053 C T 5883 5882 Leu3930Phe
211 Netherlands 12054 T 5883 5883
212 Netherlands 12055 T 5883 5883
213 Netherlands 12056 T 5883 5883
214 Netherlands 12057 G A 5883 5882 Cys3931Tyr
215 Netherlands 12058 T 5883 5883
216 Netherlands 12059 G 5883 5883
217 Netherlands 12060 A 5883 5883
218 Netherlands 12061 A G 5883 5882 Glu3932Glu
219 Netherlands 12062 G 5883 5883
220 Netherlands 12063 A 5883 5883
221 Netherlands 12064 A 5883 5883
222 Netherlands 12065 A 5883 5883
223 Netherlands 12066 T C 5883 5882 Met3934Thr
224 Netherlands 12067 G T 5883 5880 Met3934Ile
225 Netherlands 12068 C T 5883 5878 Leu3935Leu
226 Netherlands 12069 T 5883 5883
227 Netherlands 12070 G T 5883 5878 Leu3935Leu
228 Netherlands 12071 G A 5883 5882 Asp3936Asn
229 Netherlands 12072 A 5883 5883
230 Netherlands 12073 C T 5883 5881 Asp3936Asp
231 Netherlands 12074 A 5883 5883
232 Netherlands 12075 A G 5883 5881 Asn3937Ser
233 Netherlands 12076 C T 5883 5877 Asn3937Asn
234 Netherlands 12077 A 5883 5883
235 Netherlands 12078 G 5883 5883
236 Netherlands 12079 G 5883 5883
237 Netherlands 12080 G 5883 5883
238 Netherlands 12081 C 5883 5883
239 Netherlands 12082 A 5883 5883
240 Netherlands 12083 A 5883 5883
241 Netherlands 12084 C T 5883 5866 Thr3940Ile
242 Netherlands 12085 C T 5883 5880 Thr3940Thr
243 Netherlands 12086 T C 5883 5881 Leu3941Leu
244 Netherlands 12087 T 5883 5883
245 Netherlands 12088 A 5883 5883
246 Netherlands 12089 C 5883 5883
247 Netherlands 12090 A 5883 5883
248 Netherlands 12091 A 5883 5883