National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                               1    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Nepal 11843 T 15 15
1 Nepal 11844 C 15 15
2 Nepal 11845 T 15 15
3 Nepal 11846 A 15 15
4 Nepal 11847 A 15 15
5 Nepal 11848 A 15 15
6 Nepal 11849 A 15 15
7 Nepal 11850 T 15 15
8 Nepal 11851 G 15 15
9 Nepal 11852 T 15 15
10 Nepal 11853 C 15 15
11 Nepal 11854 A 15 15
12 Nepal 11855 G 15 15
13 Nepal 11856 A 15 15
14 Nepal 11857 T 15 15
15 Nepal 11858 G 15 15
16 Nepal 11859 T 15 15
17 Nepal 11860 A 15 15
18 Nepal 11861 A 15 15
19 Nepal 11862 A 15 15
20 Nepal 11863 G 15 15
21 Nepal 11864 T 15 15
22 Nepal 11865 G 15 15
23 Nepal 11866 C 15 15
24 Nepal 11867 A 15 15
25 Nepal 11868 C 15 15
26 Nepal 11869 A 15 15
27 Nepal 11870 T 15 15
28 Nepal 11871 C 15 15
29 Nepal 11872 A 15 15
30 Nepal 11873 G 15 15
31 Nepal 11874 T 15 15
32 Nepal 11875 A 15 15
33 Nepal 11876 G 15 15
34 Nepal 11877 T 15 15
35 Nepal 11878 C 15 15
36 Nepal 11879 T 15 15
37 Nepal 11880 T 15 15
38 Nepal 11881 A 15 15
39 Nepal 11882 C 15 15
40 Nepal 11883 T 15 15
41 Nepal 11884 C 15 15
42 Nepal 11885 T 15 15
43 Nepal 11886 C 15 15
44 Nepal 11887 A 15 15
45 Nepal 11888 G 15 15
46 Nepal 11889 T 15 15
47 Nepal 11890 T 15 15
48 Nepal 11891 T 15 15
49 Nepal 11892 T 15 15
50 Nepal 11893 G 15 15
51 Nepal 11894 C 15 15
52 Nepal 11895 A 15 15
53 Nepal 11896 A 15 15
54 Nepal 11897 C 15 15
55 Nepal 11898 A 15 15
56 Nepal 11899 A 15 15
57 Nepal 11900 C 15 15
58 Nepal 11901 T 15 15
59 Nepal 11902 C 15 15
60 Nepal 11903 A 15 15
61 Nepal 11904 G 15 15
62 Nepal 11905 A 15 15
63 Nepal 11906 G 15 15
64 Nepal 11907 T 15 15
65 Nepal 11908 A 15 15
66 Nepal 11909 G 15 15
67 Nepal 11910 A 15 15
68 Nepal 11911 A 15 15
69 Nepal 11912 T 15 15
70 Nepal 11913 C 15 15
71 Nepal 11914 A 15 15
72 Nepal 11915 T A 15 14 Ser3884Thr
73 Nepal 11916 C 15 15
74 Nepal 11917 A 15 15
75 Nepal 11918 T 15 15
76 Nepal 11919 C 15 15
77 Nepal 11920 T 15 15
78 Nepal 11921 A 15 15
79 Nepal 11922 A 15 15
80 Nepal 11923 A 15 15
81 Nepal 11924 T 15 15
82 Nepal 11925 T 15 15
83 Nepal 11926 G 15 15
84 Nepal 11927 T 15 15
85 Nepal 11928 G 15 15
86 Nepal 11929 G 15 15
87 Nepal 11930 G 15 15
88 Nepal 11931 C 15 15
89 Nepal 11932 T 15 15
90 Nepal 11933 C 15 15
91 Nepal 11934 A 15 15
92 Nepal 11935 A 15 15
93 Nepal 11936 T 15 15
94 Nepal 11937 G 15 15
95 Nepal 11938 T 15 15
96 Nepal 11939 G 15 15
97 Nepal 11940 T 15 15
98 Nepal 11941 C 15 15
99 Nepal 11942 C 15 15
100 Nepal 11943 A 15 15
101 Nepal 11944 G 15 15
102 Nepal 11945 T 15 15
103 Nepal 11946 T 15 15
104 Nepal 11947 A 15 15
105 Nepal 11948 C 15 15
106 Nepal 11949 A 15 15
107 Nepal 11950 C 15 15
108 Nepal 11951 A 15 15
109 Nepal 11952 A 15 15
110 Nepal 11953 T 15 15
111 Nepal 11954 G 15 15
112 Nepal 11955 A 15 15
113 Nepal 11956 C 15 15
114 Nepal 11957 A 15 15
115 Nepal 11958 T 15 15
116 Nepal 11959 T 15 15
117 Nepal 11960 C 15 15
118 Nepal 11961 T 15 15
119 Nepal 11962 C 15 15
120 Nepal 11963 T 15 15
121 Nepal 11964 T 15 15
122 Nepal 11965 A 15 15
123 Nepal 11966 G 15 15
124 Nepal 11967 C 15 15
125 Nepal 11968 T 15 15
126 Nepal 11969 A 15 15
127 Nepal 11970 A 15 15
128 Nepal 11971 A 15 15
129 Nepal 11972 G 15 15
130 Nepal 11973 A 15 15
131 Nepal 11974 T 15 15
132 Nepal 11975 A 15 15
133 Nepal 11976 C 15 15
134 Nepal 11977 T 15 15
135 Nepal 11978 A 15 15
136 Nepal 11979 C 15 15
137 Nepal 11980 T 15 15
138 Nepal 11981 G 15 15
139 Nepal 11982 A 15 15
140 Nepal 11983 A 15 15
141 Nepal 11984 G 15 15
142 Nepal 11985 C 15 15
143 Nepal 11986 C 15 15
144 Nepal 11987 T 15 15
145 Nepal 11988 T 15 15
146 Nepal 11989 T 15 15
147 Nepal 11990 G 15 15
148 Nepal 11991 A 15 15
149 Nepal 11992 A 15 15
150 Nepal 11993 A 15 15
151 Nepal 11994 A 15 15
152 Nepal 11995 A 15 15
153 Nepal 11996 A 15 15
154 Nepal 11997 T 15 15
155 Nepal 11998 G 15 15
156 Nepal 11999 G 15 15
157 Nepal 12000 T 15 15
158 Nepal 12001 T 15 15
159 Nepal 12002 T 15 15
160 Nepal 12003 C 15 15
161 Nepal 12004 A 15 15
162 Nepal 12005 C 15 15
163 Nepal 12006 T 15 15
164 Nepal 12007 A 15 15
165 Nepal 12008 C 15 15
166 Nepal 12009 T 15 15
167 Nepal 12010 T 15 15
168 Nepal 12011 T 15 15
169 Nepal 12012 C 15 15
170 Nepal 12013 T 15 15
171 Nepal 12014 G 15 15
172 Nepal 12015 T 15 15
173 Nepal 12016 T 15 15
174 Nepal 12017 T 15 15
175 Nepal 12018 T 15 15
176 Nepal 12019 G 15 15
177 Nepal 12020 C 15 15
178 Nepal 12021 T 15 15
179 Nepal 12022 T 15 15
180 Nepal 12023 T 15 15
181 Nepal 12024 C 15 15
182 Nepal 12025 C 15 15
183 Nepal 12026 A 15 15
184 Nepal 12027 T 15 15
185 Nepal 12028 G 15 15
186 Nepal 12029 C 15 15
187 Nepal 12030 A 15 15
188 Nepal 12031 G 15 15
189 Nepal 12032 G 15 15
190 Nepal 12033 G 15 15
191 Nepal 12034 T 15 15
192 Nepal 12035 G 15 15
193 Nepal 12036 C 15 15
194 Nepal 12037 T 15 15
195 Nepal 12038 G 15 15
196 Nepal 12039 T 15 15
197 Nepal 12040 A 15 15
198 Nepal 12041 G 15 15
199 Nepal 12042 A 15 15
200 Nepal 12043 C 15 15
201 Nepal 12044 A 15 15
202 Nepal 12045 T 15 15
203 Nepal 12046 A 15 15
204 Nepal 12047 A 15 15
205 Nepal 12048 A 15 15
206 Nepal 12049 C 15 15
207 Nepal 12050 A 15 15
208 Nepal 12051 A 15 15
209 Nepal 12052 G 15 15
210 Nepal 12053 C 15 15
211 Nepal 12054 T 15 15
212 Nepal 12055 T 15 15
213 Nepal 12056 T 15 15
214 Nepal 12057 G 15 15
215 Nepal 12058 T 15 15
216 Nepal 12059 G 15 15
217 Nepal 12060 A 15 15
218 Nepal 12061 A 15 15
219 Nepal 12062 G 15 15
220 Nepal 12063 A 15 15
221 Nepal 12064 A 15 15
222 Nepal 12065 A 15 15
223 Nepal 12066 T 15 15
224 Nepal 12067 G 15 15
225 Nepal 12068 C 15 15
226 Nepal 12069 T 15 15
227 Nepal 12070 G 15 15
228 Nepal 12071 G 15 15
229 Nepal 12072 A 15 15
230 Nepal 12073 C 15 15
231 Nepal 12074 A 15 15
232 Nepal 12075 A 15 15
233 Nepal 12076 C 15 15
234 Nepal 12077 A 15 15
235 Nepal 12078 G 15 15
236 Nepal 12079 G 15 15
237 Nepal 12080 G 15 15
238 Nepal 12081 C 15 15
239 Nepal 12082 A 15 15
240 Nepal 12083 A 15 15
241 Nepal 12084 C 15 15
242 Nepal 12085 C 15 15
243 Nepal 12086 T 15 15
244 Nepal 12087 T 15 15
245 Nepal 12088 A 15 15
246 Nepal 12089 C 15 15
247 Nepal 12090 A 15 15
248 Nepal 12091 A 15 15