National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                   1                
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Myanmar 11843 T 41 41
1 Myanmar 11844 C 41 41
2 Myanmar 11845 T 41 41
3 Myanmar 11846 A 41 41
4 Myanmar 11847 A 41 41
5 Myanmar 11848 A 41 41
6 Myanmar 11849 A 41 41
7 Myanmar 11850 T 41 41
8 Myanmar 11851 G 41 41
9 Myanmar 11852 T 41 41
10 Myanmar 11853 C 41 41
11 Myanmar 11854 A 41 41
12 Myanmar 11855 G 41 41
13 Myanmar 11856 A 41 41
14 Myanmar 11857 T 41 41
15 Myanmar 11858 G 41 41
16 Myanmar 11859 T 41 41
17 Myanmar 11860 A 41 41
18 Myanmar 11861 A 41 41
19 Myanmar 11862 A 41 41
20 Myanmar 11863 G 41 41
21 Myanmar 11864 T 41 41
22 Myanmar 11865 G 41 41
23 Myanmar 11866 C 41 41
24 Myanmar 11867 A 41 41
25 Myanmar 11868 C 41 41
26 Myanmar 11869 A 41 41
27 Myanmar 11870 T 41 41
28 Myanmar 11871 C 41 41
29 Myanmar 11872 A 41 41
30 Myanmar 11873 G 41 41
31 Myanmar 11874 T 41 41
32 Myanmar 11875 A 41 41
33 Myanmar 11876 G 41 41
34 Myanmar 11877 T 41 41
35 Myanmar 11878 C 41 41
36 Myanmar 11879 T 41 41
37 Myanmar 11880 T 41 41
38 Myanmar 11881 A 41 41
39 Myanmar 11882 C 41 41
40 Myanmar 11883 T 41 41
41 Myanmar 11884 C 41 41
42 Myanmar 11885 T 41 41
43 Myanmar 11886 C 41 41
44 Myanmar 11887 A 41 41
45 Myanmar 11888 G 41 41
46 Myanmar 11889 T 41 41
47 Myanmar 11890 T 41 41
48 Myanmar 11891 T 41 41
49 Myanmar 11892 T 41 41
50 Myanmar 11893 G 41 41
51 Myanmar 11894 C 41 41
52 Myanmar 11895 A 41 41
53 Myanmar 11896 A 41 41
54 Myanmar 11897 C 41 41
55 Myanmar 11898 A 41 41
56 Myanmar 11899 A 41 41
57 Myanmar 11900 C 41 41
58 Myanmar 11901 T 41 41
59 Myanmar 11902 C 41 41
60 Myanmar 11903 A 41 41
61 Myanmar 11904 G 41 41
62 Myanmar 11905 A 41 41
63 Myanmar 11906 G 41 41
64 Myanmar 11907 T 41 41
65 Myanmar 11908 A 41 41
66 Myanmar 11909 G 41 41
67 Myanmar 11910 A 41 41
68 Myanmar 11911 A 41 41
69 Myanmar 11912 T 41 41
70 Myanmar 11913 C 41 41
71 Myanmar 11914 A 41 41
72 Myanmar 11915 T 41 41
73 Myanmar 11916 C 41 41
74 Myanmar 11917 A 41 41
75 Myanmar 11918 T 41 41
76 Myanmar 11919 C 41 41
77 Myanmar 11920 T 41 41
78 Myanmar 11921 A 41 41
79 Myanmar 11922 A 41 41
80 Myanmar 11923 A 41 41
81 Myanmar 11924 T 41 41
82 Myanmar 11925 T 41 41
83 Myanmar 11926 G 41 41
84 Myanmar 11927 T 41 41
85 Myanmar 11928 G 41 41
86 Myanmar 11929 G 41 41
87 Myanmar 11930 G 41 41
88 Myanmar 11931 C 41 41
89 Myanmar 11932 T 41 41
90 Myanmar 11933 C 41 41
91 Myanmar 11934 A 41 41
92 Myanmar 11935 A 41 41
93 Myanmar 11936 T 41 41
94 Myanmar 11937 G 41 41
95 Myanmar 11938 T 41 41
96 Myanmar 11939 G 41 41
97 Myanmar 11940 T 41 41
98 Myanmar 11941 C 41 41
99 Myanmar 11942 C 41 41
100 Myanmar 11943 A 41 41
101 Myanmar 11944 G 41 41
102 Myanmar 11945 T 41 41
103 Myanmar 11946 T 41 41
104 Myanmar 11947 A 41 41
105 Myanmar 11948 C 41 41
106 Myanmar 11949 A 41 41
107 Myanmar 11950 C 41 41
108 Myanmar 11951 A 41 41
109 Myanmar 11952 A 41 41
110 Myanmar 11953 T 41 41
111 Myanmar 11954 G 41 41
112 Myanmar 11955 A 41 41
113 Myanmar 11956 C 41 41
114 Myanmar 11957 A 41 41
115 Myanmar 11958 T 41 41
116 Myanmar 11959 T 41 41
117 Myanmar 11960 C 41 41
118 Myanmar 11961 T 41 41
119 Myanmar 11962 C 41 41
120 Myanmar 11963 T 41 41
121 Myanmar 11964 T 41 41
122 Myanmar 11965 A 41 41
123 Myanmar 11966 G 41 41
124 Myanmar 11967 C 41 41
125 Myanmar 11968 T 41 41
126 Myanmar 11969 A 41 41
127 Myanmar 11970 A 41 41
128 Myanmar 11971 A 41 41
129 Myanmar 11972 G 41 41
130 Myanmar 11973 A 41 41
131 Myanmar 11974 T 41 41
132 Myanmar 11975 A 41 41
133 Myanmar 11976 C 41 41
134 Myanmar 11977 T 41 41
135 Myanmar 11978 A 41 41
136 Myanmar 11979 C 41 41
137 Myanmar 11980 T 41 41
138 Myanmar 11981 G 41 41
139 Myanmar 11982 A 41 41
140 Myanmar 11983 A 41 41
141 Myanmar 11984 G 41 41
142 Myanmar 11985 C 41 41
143 Myanmar 11986 C 41 41
144 Myanmar 11987 T 41 41
145 Myanmar 11988 T 41 41
146 Myanmar 11989 T 41 41
147 Myanmar 11990 G 41 41
148 Myanmar 11991 A 41 41
149 Myanmar 11992 A 41 41
150 Myanmar 11993 A 41 41
151 Myanmar 11994 A 41 41
152 Myanmar 11995 A 41 41
153 Myanmar 11996 A 41 41
154 Myanmar 11997 T 41 41
155 Myanmar 11998 G 41 41
156 Myanmar 11999 G 41 41
157 Myanmar 12000 T 41 41
158 Myanmar 12001 T 41 41
159 Myanmar 12002 T 41 41
160 Myanmar 12003 C 41 41
161 Myanmar 12004 A 41 41
162 Myanmar 12005 C T 41 40 Leu3914Leu
163 Myanmar 12006 T 41 41
164 Myanmar 12007 A 41 41
165 Myanmar 12008 C 41 41
166 Myanmar 12009 T 41 41
167 Myanmar 12010 T 41 41
168 Myanmar 12011 T 41 41
169 Myanmar 12012 C 41 41
170 Myanmar 12013 T 41 41
171 Myanmar 12014 G 41 41
172 Myanmar 12015 T 41 41
173 Myanmar 12016 T 41 41
174 Myanmar 12017 T 41 41
175 Myanmar 12018 T 41 41
176 Myanmar 12019 G 41 41
177 Myanmar 12020 C 41 41
178 Myanmar 12021 T 41 41
179 Myanmar 12022 T 41 41
180 Myanmar 12023 T 41 41
181 Myanmar 12024 C 41 41
182 Myanmar 12025 C 41 41
183 Myanmar 12026 A 41 41
184 Myanmar 12027 T 41 41
185 Myanmar 12028 G 41 41
186 Myanmar 12029 C 41 41
187 Myanmar 12030 A 41 41
188 Myanmar 12031 G 41 41
189 Myanmar 12032 G 41 41
190 Myanmar 12033 G 41 41
191 Myanmar 12034 T 41 41
192 Myanmar 12035 G 41 41
193 Myanmar 12036 C 41 41
194 Myanmar 12037 T 41 41
195 Myanmar 12038 G 41 41
196 Myanmar 12039 T 41 41
197 Myanmar 12040 A 41 41
198 Myanmar 12041 G 41 41
199 Myanmar 12042 A 41 41
200 Myanmar 12043 C 41 41
201 Myanmar 12044 A 41 41
202 Myanmar 12045 T 41 41
203 Myanmar 12046 A 41 41
204 Myanmar 12047 A 41 41
205 Myanmar 12048 A 41 41
206 Myanmar 12049 C 41 41
207 Myanmar 12050 A 41 41
208 Myanmar 12051 A 41 41
209 Myanmar 12052 G 41 41
210 Myanmar 12053 C 41 41
211 Myanmar 12054 T 41 41
212 Myanmar 12055 T 41 41
213 Myanmar 12056 T 41 41
214 Myanmar 12057 G 41 41
215 Myanmar 12058 T 41 41
216 Myanmar 12059 G 41 41
217 Myanmar 12060 A 41 41
218 Myanmar 12061 A 41 41
219 Myanmar 12062 G 41 41
220 Myanmar 12063 A 41 41
221 Myanmar 12064 A 41 41
222 Myanmar 12065 A 41 41
223 Myanmar 12066 T 41 41
224 Myanmar 12067 G 41 41
225 Myanmar 12068 C 41 41
226 Myanmar 12069 T 41 41
227 Myanmar 12070 G 41 41
228 Myanmar 12071 G 41 41
229 Myanmar 12072 A 41 41
230 Myanmar 12073 C 41 41
231 Myanmar 12074 A 41 41
232 Myanmar 12075 A 41 41
233 Myanmar 12076 C 41 41
234 Myanmar 12077 A 41 41
235 Myanmar 12078 G 41 41
236 Myanmar 12079 G 41 41
237 Myanmar 12080 G 41 41
238 Myanmar 12081 C 41 41
239 Myanmar 12082 A 41 41
240 Myanmar 12083 A 41 41
241 Myanmar 12084 C 41 41
242 Myanmar 12085 C 41 41
243 Myanmar 12086 T 41 41
244 Myanmar 12087 T 41 41
245 Myanmar 12088 A 41 41
246 Myanmar 12089 C 41 41
247 Myanmar 12090 A 41 41
248 Myanmar 12091 A 41 41