National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12 1                                  
V   27                                 2  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Mozambique 11843 T 94 94
1 Mozambique 11844 C 94 94
2 Mozambique 11845 T 94 94
3 Mozambique 11846 A 94 94
4 Mozambique 11847 A 94 94
5 Mozambique 11848 A 94 94
6 Mozambique 11849 A 94 94
7 Mozambique 11850 T 94 94
8 Mozambique 11851 G 94 94
9 Mozambique 11852 T 94 94
10 Mozambique 11853 C 94 94
11 Mozambique 11854 A 94 94
12 Mozambique 11855 G 94 94
13 Mozambique 11856 A 94 94
14 Mozambique 11857 T 94 94
15 Mozambique 11858 G 94 94
16 Mozambique 11859 T 94 94
17 Mozambique 11860 A 94 94
18 Mozambique 11861 A 94 94
19 Mozambique 11862 A 94 94
20 Mozambique 11863 G 94 94
21 Mozambique 11864 T 94 94
22 Mozambique 11865 G 94 94
23 Mozambique 11866 C 94 94
24 Mozambique 11867 A 94 94
25 Mozambique 11868 C 94 94
26 Mozambique 11869 A 94 94
27 Mozambique 11870 T 94 94
28 Mozambique 11871 C 94 94
29 Mozambique 11872 A 94 94
30 Mozambique 11873 G 94 94
31 Mozambique 11874 T 94 94
32 Mozambique 11875 A G 94 93 Val3870Val
33 Mozambique 11876 G 94 94
34 Mozambique 11877 T 94 94
35 Mozambique 11878 C 94 94
36 Mozambique 11879 T 94 94
37 Mozambique 11880 T 94 94
38 Mozambique 11881 A 94 94
39 Mozambique 11882 C 94 94
40 Mozambique 11883 T 94 94
41 Mozambique 11884 C 94 94
42 Mozambique 11885 T 94 94
43 Mozambique 11886 C 94 94
44 Mozambique 11887 A 94 94
45 Mozambique 11888 G 94 94
46 Mozambique 11889 T 94 94
47 Mozambique 11890 T 94 94
48 Mozambique 11891 T 94 94
49 Mozambique 11892 T 94 94
50 Mozambique 11893 G 94 94
51 Mozambique 11894 C 94 94
52 Mozambique 11895 A 94 94
53 Mozambique 11896 A 94 94
54 Mozambique 11897 C 94 94
55 Mozambique 11898 A 94 94
56 Mozambique 11899 A 94 94
57 Mozambique 11900 C 94 94
58 Mozambique 11901 T 94 94
59 Mozambique 11902 C 94 94
60 Mozambique 11903 A 94 94
61 Mozambique 11904 G 94 94
62 Mozambique 11905 A 94 94
63 Mozambique 11906 G 94 94
64 Mozambique 11907 T 94 94
65 Mozambique 11908 A 94 94
66 Mozambique 11909 G 94 94
67 Mozambique 11910 A 94 94
68 Mozambique 11911 A 94 94
69 Mozambique 11912 T 94 94
70 Mozambique 11913 C 94 94
71 Mozambique 11914 A 94 94
72 Mozambique 11915 T 94 94
73 Mozambique 11916 C 94 94
74 Mozambique 11917 A 94 94
75 Mozambique 11918 T 94 94
76 Mozambique 11919 C 94 94
77 Mozambique 11920 T 94 94
78 Mozambique 11921 A 94 94
79 Mozambique 11922 A 94 94
80 Mozambique 11923 A 94 94
81 Mozambique 11924 T 94 94
82 Mozambique 11925 T 94 94
83 Mozambique 11926 G 94 94
84 Mozambique 11927 T 94 94
85 Mozambique 11928 G 94 94
86 Mozambique 11929 G 94 94
87 Mozambique 11930 G 94 94
88 Mozambique 11931 C 94 94
89 Mozambique 11932 T 94 94
90 Mozambique 11933 C 94 94
91 Mozambique 11934 A 94 94
92 Mozambique 11935 A 94 94
93 Mozambique 11936 T 94 94
94 Mozambique 11937 G 94 94
95 Mozambique 11938 T 94 94
96 Mozambique 11939 G 94 94
97 Mozambique 11940 T 94 94
98 Mozambique 11941 C T 94 93 Val3892Val
99 Mozambique 11942 C 94 94
100 Mozambique 11943 A 94 94
101 Mozambique 11944 G 94 94
102 Mozambique 11945 T 94 94
103 Mozambique 11946 T 94 94
104 Mozambique 11947 A 94 94
105 Mozambique 11948 C 94 94
106 Mozambique 11949 A 94 94
107 Mozambique 11950 C 94 94
108 Mozambique 11951 A 94 94
109 Mozambique 11952 A 94 94
110 Mozambique 11953 T 94 94
111 Mozambique 11954 G 94 94
112 Mozambique 11955 A 94 94
113 Mozambique 11956 C 94 94
114 Mozambique 11957 A 94 94
115 Mozambique 11958 T 94 94
116 Mozambique 11959 T 94 94
117 Mozambique 11960 C 94 94
118 Mozambique 11961 T 94 94
119 Mozambique 11962 C 94 94
120 Mozambique 11963 T 94 94
121 Mozambique 11964 T 94 94
122 Mozambique 11965 A 94 94
123 Mozambique 11966 G 94 94
124 Mozambique 11967 C 94 94
125 Mozambique 11968 T 94 94
126 Mozambique 11969 A 94 94
127 Mozambique 11970 A 94 94
128 Mozambique 11971 A 94 94
129 Mozambique 11972 G 94 94
130 Mozambique 11973 A 94 94
131 Mozambique 11974 T 94 94
132 Mozambique 11975 A 94 94
133 Mozambique 11976 C 94 94
134 Mozambique 11977 T 94 94
135 Mozambique 11978 A 94 94
136 Mozambique 11979 C 94 94
137 Mozambique 11980 T 94 94
138 Mozambique 11981 G 94 94
139 Mozambique 11982 A 94 94
140 Mozambique 11983 A 94 94
141 Mozambique 11984 G 94 94
142 Mozambique 11985 C 94 94
143 Mozambique 11986 C 94 94
144 Mozambique 11987 T 94 94
145 Mozambique 11988 T 94 94
146 Mozambique 11989 T 94 93
147 Mozambique 11990 G 94 93
148 Mozambique 11991 A 94 93
149 Mozambique 11992 A 94 93
150 Mozambique 11993 A 94 93
151 Mozambique 11994 A 94 93
152 Mozambique 11995 A 94 93
153 Mozambique 11996 A 94 93
154 Mozambique 11997 T 94 93
155 Mozambique 11998 G 94 93
156 Mozambique 11999 G 94 93
157 Mozambique 12000 T 94 93
158 Mozambique 12001 T 94 93
159 Mozambique 12002 T 94 93
160 Mozambique 12003 C 94 93
161 Mozambique 12004 A 94 94
162 Mozambique 12005 C 94 94
163 Mozambique 12006 T 94 94
164 Mozambique 12007 A 94 94
165 Mozambique 12008 C 94 94
166 Mozambique 12009 T 94 94
167 Mozambique 12010 T 94 94
168 Mozambique 12011 T 94 94
169 Mozambique 12012 C 94 94
170 Mozambique 12013 T 94 94
171 Mozambique 12014 G 94 94
172 Mozambique 12015 T 94 94
173 Mozambique 12016 T 94 94
174 Mozambique 12017 T 94 94
175 Mozambique 12018 T 94 94
176 Mozambique 12019 G 94 94
177 Mozambique 12020 C 94 94
178 Mozambique 12021 T 94 94
179 Mozambique 12022 T 94 94
180 Mozambique 12023 T 94 93
181 Mozambique 12024 C 94 94
182 Mozambique 12025 C 94 94
183 Mozambique 12026 A 94 94
184 Mozambique 12027 T 94 94
185 Mozambique 12028 G 94 94
186 Mozambique 12029 C 94 94
187 Mozambique 12030 A 94 94
188 Mozambique 12031 G 94 94
189 Mozambique 12032 G 94 94
190 Mozambique 12033 G 94 94
191 Mozambique 12034 T 94 94
192 Mozambique 12035 G 94 94
193 Mozambique 12036 C 94 94
194 Mozambique 12037 T 94 94
195 Mozambique 12038 G 94 94
196 Mozambique 12039 T 94 94
197 Mozambique 12040 A 94 94
198 Mozambique 12041 G 94 94
199 Mozambique 12042 A 94 94
200 Mozambique 12043 C 94 94
201 Mozambique 12044 A 94 94
202 Mozambique 12045 T 94 94
203 Mozambique 12046 A 94 94
204 Mozambique 12047 A 94 94
205 Mozambique 12048 A 94 94
206 Mozambique 12049 C 94 94
207 Mozambique 12050 A 94 94
208 Mozambique 12051 A 94 94
209 Mozambique 12052 G 94 94
210 Mozambique 12053 C 94 94
211 Mozambique 12054 T 94 94
212 Mozambique 12055 T 94 94
213 Mozambique 12056 T 94 94
214 Mozambique 12057 G 94 94
215 Mozambique 12058 T 94 94
216 Mozambique 12059 G 94 94
217 Mozambique 12060 A 94 94
218 Mozambique 12061 A 94 94
219 Mozambique 12062 G 94 94
220 Mozambique 12063 A 94 94
221 Mozambique 12064 A 94 94
222 Mozambique 12065 A 94 94
223 Mozambique 12066 T 94 94
224 Mozambique 12067 G 94 94
225 Mozambique 12068 C 94 94
226 Mozambique 12069 T 94 94
227 Mozambique 12070 G 94 94
228 Mozambique 12071 G 94 94
229 Mozambique 12072 A 94 94
230 Mozambique 12073 C 94 94
231 Mozambique 12074 A 94 94
232 Mozambique 12075 A 94 94
233 Mozambique 12076 C 94 94
234 Mozambique 12077 A 94 94
235 Mozambique 12078 G 94 94
236 Mozambique 12079 G 94 94
237 Mozambique 12080 G 94 94
238 Mozambique 12081 C 94 94
239 Mozambique 12082 A 94 94
240 Mozambique 12083 A G 94 92 Thr3940Ala
241 Mozambique 12084 C 94 94
242 Mozambique 12085 C 94 94
243 Mozambique 12086 T 94 94
244 Mozambique 12087 T 94 94
245 Mozambique 12088 A 94 94
246 Mozambique 12089 C 94 94
247 Mozambique 12090 A 94 94
248 Mozambique 12091 A 94 94