National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15     1                              
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12               1                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Morocco 11843 T 119 119
1 Morocco 11844 C 119 119
2 Morocco 11845 T 119 119
3 Morocco 11846 A 119 119
4 Morocco 11847 A 119 119
5 Morocco 11848 A 119 119
6 Morocco 11849 A 119 119
7 Morocco 11850 T 119 119
8 Morocco 11851 G 119 119
9 Morocco 11852 T 119 119
10 Morocco 11853 C 119 119
11 Morocco 11854 A 119 119
12 Morocco 11855 G 119 119
13 Morocco 11856 A 119 119
14 Morocco 11857 T 119 119
15 Morocco 11858 G 119 119
16 Morocco 11859 T 119 119
17 Morocco 11860 A 119 119
18 Morocco 11861 A 119 119
19 Morocco 11862 A 119 119
20 Morocco 11863 G 119 119
21 Morocco 11864 T 121 121
22 Morocco 11865 G 121 121
23 Morocco 11866 C 121 121
24 Morocco 11867 A 121 121
25 Morocco 11868 C 121 121
26 Morocco 11869 A 121 121
27 Morocco 11870 T 121 121
28 Morocco 11871 C 121 121
29 Morocco 11872 A 121 121
30 Morocco 11873 G 121 121
31 Morocco 11874 T 121 121
32 Morocco 11875 A 121 121
33 Morocco 11876 G 121 121
34 Morocco 11877 T 121 121
35 Morocco 11878 C 121 121
36 Morocco 11879 T 121 121
37 Morocco 11880 T 121 121
38 Morocco 11881 A 121 121
39 Morocco 11882 C 121 121
40 Morocco 11883 T 121 121
41 Morocco 11884 C 121 121
42 Morocco 11885 T 121 121
43 Morocco 11886 C 121 121
44 Morocco 11887 A 121 121
45 Morocco 11888 G 121 121
46 Morocco 11889 T 121 121
47 Morocco 11890 T 121 121
48 Morocco 11891 T 121 121
49 Morocco 11892 T 121 121
50 Morocco 11893 G 121 121
51 Morocco 11894 C 121 121
52 Morocco 11895 A 121 121
53 Morocco 11896 A 121 121
54 Morocco 11897 C 121 121
55 Morocco 11898 A 121 121
56 Morocco 11899 A 121 121
57 Morocco 11900 C 121 121
58 Morocco 11901 T 121 121
59 Morocco 11902 C 121 121
60 Morocco 11903 A 121 121
61 Morocco 11904 G 121 121
62 Morocco 11905 A 121 121
63 Morocco 11906 G 121 121
64 Morocco 11907 T 121 121
65 Morocco 11908 A 121 121
66 Morocco 11909 G 121 121
67 Morocco 11910 A 121 121
68 Morocco 11911 A 121 121
69 Morocco 11912 T 121 121
70 Morocco 11913 C 121 121
71 Morocco 11914 A 121 121
72 Morocco 11915 T 121 121
73 Morocco 11916 C 121 121
74 Morocco 11917 A 121 121
75 Morocco 11918 T 121 121
76 Morocco 11919 C 121 121
77 Morocco 11920 T 121 121
78 Morocco 11921 A 121 121
79 Morocco 11922 A 121 121
80 Morocco 11923 A 121 121
81 Morocco 11924 T 121 121
82 Morocco 11925 T 121 121
83 Morocco 11926 G 121 121
84 Morocco 11927 T 121 121
85 Morocco 11928 G 121 121
86 Morocco 11929 G 121 121
87 Morocco 11930 G 121 121
88 Morocco 11931 C 121 121
89 Morocco 11932 T 121 121
90 Morocco 11933 C 121 121
91 Morocco 11934 A 121 121
92 Morocco 11935 A 121 121
93 Morocco 11936 T 121 121
94 Morocco 11937 G 121 121
95 Morocco 11938 T 121 121
96 Morocco 11939 G 121 121
97 Morocco 11940 T 121 121
98 Morocco 11941 C 121 121
99 Morocco 11942 C 121 121
100 Morocco 11943 A 121 121
101 Morocco 11944 G 121 121
102 Morocco 11945 T 121 121
103 Morocco 11946 T 121 121
104 Morocco 11947 A 121 121
105 Morocco 11948 C 121 121
106 Morocco 11949 A 121 121
107 Morocco 11950 C 121 121
108 Morocco 11951 A 121 121
109 Morocco 11952 A 121 121
110 Morocco 11953 T 121 121
111 Morocco 11954 G 121 121
112 Morocco 11955 A 121 121
113 Morocco 11956 C 121 121
114 Morocco 11957 A 121 121
115 Morocco 11958 T 121 121
116 Morocco 11959 T 121 121
117 Morocco 11960 C 121 121
118 Morocco 11961 T 121 121
119 Morocco 11962 C 121 121
120 Morocco 11963 T 121 121
121 Morocco 11964 T 121 121
122 Morocco 11965 A 121 121
123 Morocco 11966 G 121 121
124 Morocco 11967 C 121 121
125 Morocco 11968 T 121 121
126 Morocco 11969 A 121 121
127 Morocco 11970 A 121 121
128 Morocco 11971 A 121 121
129 Morocco 11972 G 121 121
130 Morocco 11973 A 121 121
131 Morocco 11974 T C 121 106 Asp3903Asp
132 Morocco 11975 A 121 121
133 Morocco 11976 C 121 121
134 Morocco 11977 T 121 121
135 Morocco 11978 A 121 121
136 Morocco 11979 C 121 121
137 Morocco 11980 T 121 121
138 Morocco 11981 G 121 121
139 Morocco 11982 A 121 121
140 Morocco 11983 A 121 121
141 Morocco 11984 G 121 121
142 Morocco 11985 C 121 121
143 Morocco 11986 C 121 121
144 Morocco 11987 T 121 121
145 Morocco 11988 T 121 121
146 Morocco 11989 T 121 121
147 Morocco 11990 G 121 121
148 Morocco 11991 A 121 121
149 Morocco 11992 A 121 121
150 Morocco 11993 A 121 121
151 Morocco 11994 A 121 121
152 Morocco 11995 A 121 121
153 Morocco 11996 A 121 121
154 Morocco 11997 T 121 121
155 Morocco 11998 G 121 121
156 Morocco 11999 G 121 121
157 Morocco 12000 T 121 121
158 Morocco 12001 T 121 121
159 Morocco 12002 T 121 121
160 Morocco 12003 C 121 121
161 Morocco 12004 A 121 121
162 Morocco 12005 C 121 121
163 Morocco 12006 T 121 121
164 Morocco 12007 A 121 121
165 Morocco 12008 C 121 121
166 Morocco 12009 T 121 121
167 Morocco 12010 T 121 121
168 Morocco 12011 T 121 121
169 Morocco 12012 C 121 121
170 Morocco 12013 T 121 121
171 Morocco 12014 G 121 121
172 Morocco 12015 T 121 121
173 Morocco 12016 T 121 121
174 Morocco 12017 T 121 121
175 Morocco 12018 T 121 121
176 Morocco 12019 G 121 121
177 Morocco 12020 C 121 121
178 Morocco 12021 T 121 121
179 Morocco 12022 T 121 121
180 Morocco 12023 T 121 121
181 Morocco 12024 C 121 121
182 Morocco 12025 C 121 121
183 Morocco 12026 A 121 121
184 Morocco 12027 T 121 121
185 Morocco 12028 G 121 121
186 Morocco 12029 C 121 121
187 Morocco 12030 A 121 121
188 Morocco 12031 G 121 121
189 Morocco 12032 G 121 121
190 Morocco 12033 G 121 121
191 Morocco 12034 T 121 121
192 Morocco 12035 G 121 121
193 Morocco 12036 C 121 121
194 Morocco 12037 T 121 121
195 Morocco 12038 G 121 121
196 Morocco 12039 T 121 121
197 Morocco 12040 A 121 121
198 Morocco 12041 G 121 121
199 Morocco 12042 A 121 121
200 Morocco 12043 C 121 121
201 Morocco 12044 A 121 121
202 Morocco 12045 T 121 121
203 Morocco 12046 A 121 121
204 Morocco 12047 A 121 121
205 Morocco 12048 A 121 121
206 Morocco 12049 C 121 121
207 Morocco 12050 A 121 121
208 Morocco 12051 A 121 121
209 Morocco 12052 G 121 121
210 Morocco 12053 C 121 121
211 Morocco 12054 T 121 121
212 Morocco 12055 T 121 121
213 Morocco 12056 T 121 121
214 Morocco 12057 G 121 121
215 Morocco 12058 T 121 121
216 Morocco 12059 G 121 121
217 Morocco 12060 A 121 121
218 Morocco 12061 A 121 121
219 Morocco 12062 G 121 121
220 Morocco 12063 A 121 121
221 Morocco 12064 A 121 121
222 Morocco 12065 A 121 121
223 Morocco 12066 T 121 121
224 Morocco 12067 G 121 121
225 Morocco 12068 C 121 121
226 Morocco 12069 T 121 121
227 Morocco 12070 G 121 121
228 Morocco 12071 G 121 121
229 Morocco 12072 A 121 121
230 Morocco 12073 C 121 121
231 Morocco 12074 A 121 121
232 Morocco 12075 A 121 121
233 Morocco 12076 C 121 121
234 Morocco 12077 A 121 121
235 Morocco 12078 G 121 121
236 Morocco 12079 G 121 121
237 Morocco 12080 G 121 121
238 Morocco 12081 C 121 121
239 Morocco 12082 A 121 121
240 Morocco 12083 A 121 121
241 Morocco 12084 C T 121 120 Thr3940Ile
242 Morocco 12085 C 121 121
243 Morocco 12086 T 121 121
244 Morocco 12087 T 121 121
245 Morocco 12088 A 121 121
246 Morocco 12089 C 121 121
247 Morocco 12090 A 121 121
248 Morocco 12091 A 121 121