National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                       1            
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Montenegro 11843 T 12 12
1 Montenegro 11844 C 12 12
2 Montenegro 11845 T 12 12
3 Montenegro 11846 A 12 12
4 Montenegro 11847 A 12 12
5 Montenegro 11848 A 12 12
6 Montenegro 11849 A 12 12
7 Montenegro 11850 T 12 12
8 Montenegro 11851 G 12 12
9 Montenegro 11852 T 12 12
10 Montenegro 11853 C 12 12
11 Montenegro 11854 A 12 12
12 Montenegro 11855 G 12 12
13 Montenegro 11856 A 12 12
14 Montenegro 11857 T 12 12
15 Montenegro 11858 G 12 12
16 Montenegro 11859 T 12 12
17 Montenegro 11860 A 12 12
18 Montenegro 11861 A 12 12
19 Montenegro 11862 A 12 12
20 Montenegro 11863 G 12 12
21 Montenegro 11864 T 12 12
22 Montenegro 11865 G 12 12
23 Montenegro 11866 C 12 12
24 Montenegro 11867 A 12 12
25 Montenegro 11868 C 12 12
26 Montenegro 11869 A 12 12
27 Montenegro 11870 T 12 12
28 Montenegro 11871 C 12 12
29 Montenegro 11872 A 12 12
30 Montenegro 11873 G 12 12
31 Montenegro 11874 T 12 12
32 Montenegro 11875 A 12 12
33 Montenegro 11876 G 12 12
34 Montenegro 11877 T 12 12
35 Montenegro 11878 C 12 12
36 Montenegro 11879 T 12 12
37 Montenegro 11880 T 12 12
38 Montenegro 11881 A 12 12
39 Montenegro 11882 C 12 12
40 Montenegro 11883 T 12 12
41 Montenegro 11884 C 12 12
42 Montenegro 11885 T 12 12
43 Montenegro 11886 C 12 12
44 Montenegro 11887 A 12 12
45 Montenegro 11888 G 12 12
46 Montenegro 11889 T 12 12
47 Montenegro 11890 T 12 12
48 Montenegro 11891 T 12 12
49 Montenegro 11892 T 12 12
50 Montenegro 11893 G 12 12
51 Montenegro 11894 C 12 12
52 Montenegro 11895 A 12 12
53 Montenegro 11896 A 12 12
54 Montenegro 11897 C 12 12
55 Montenegro 11898 A 12 12
56 Montenegro 11899 A 12 12
57 Montenegro 11900 C 12 12
58 Montenegro 11901 T 12 12
59 Montenegro 11902 C 12 12
60 Montenegro 11903 A 12 12
61 Montenegro 11904 G 12 12
62 Montenegro 11905 A 12 12
63 Montenegro 11906 G 12 12
64 Montenegro 11907 T 12 12
65 Montenegro 11908 A 12 12
66 Montenegro 11909 G 12 12
67 Montenegro 11910 A 12 12
68 Montenegro 11911 A 12 12
69 Montenegro 11912 T 12 12
70 Montenegro 11913 C 12 12
71 Montenegro 11914 A 12 12
72 Montenegro 11915 T 12 12
73 Montenegro 11916 C 12 12
74 Montenegro 11917 A 12 12
75 Montenegro 11918 T 12 12
76 Montenegro 11919 C 12 12
77 Montenegro 11920 T 12 12
78 Montenegro 11921 A 12 12
79 Montenegro 11922 A 12 12
80 Montenegro 11923 A 12 12
81 Montenegro 11924 T 12 12
82 Montenegro 11925 T 12 12
83 Montenegro 11926 G 12 12
84 Montenegro 11927 T 12 12
85 Montenegro 11928 G 12 12
86 Montenegro 11929 G 12 12
87 Montenegro 11930 G 12 12
88 Montenegro 11931 C 12 12
89 Montenegro 11932 T 12 12
90 Montenegro 11933 C 12 12
91 Montenegro 11934 A 12 12
92 Montenegro 11935 A 12 12
93 Montenegro 11936 T 12 12
94 Montenegro 11937 G 12 12
95 Montenegro 11938 T 12 12
96 Montenegro 11939 G 12 12
97 Montenegro 11940 T 12 12
98 Montenegro 11941 C 12 12
99 Montenegro 11942 C 12 12
100 Montenegro 11943 A 12 12
101 Montenegro 11944 G 12 12
102 Montenegro 11945 T 12 12
103 Montenegro 11946 T 12 12
104 Montenegro 11947 A 12 12
105 Montenegro 11948 C 12 12
106 Montenegro 11949 A 12 12
107 Montenegro 11950 C 12 12
108 Montenegro 11951 A 12 12
109 Montenegro 11952 A 12 12
110 Montenegro 11953 T 12 12
111 Montenegro 11954 G 12 12
112 Montenegro 11955 A 12 12
113 Montenegro 11956 C 12 12
114 Montenegro 11957 A 12 12
115 Montenegro 11958 T 12 12
116 Montenegro 11959 T 12 12
117 Montenegro 11960 C 12 12
118 Montenegro 11961 T 12 12
119 Montenegro 11962 C 12 12
120 Montenegro 11963 T 12 12
121 Montenegro 11964 T 12 12
122 Montenegro 11965 A 12 12
123 Montenegro 11966 G 12 12
124 Montenegro 11967 C 12 12
125 Montenegro 11968 T 12 12
126 Montenegro 11969 A 12 12
127 Montenegro 11970 A 12 12
128 Montenegro 11971 A 12 12
129 Montenegro 11972 G 12 12
130 Montenegro 11973 A 12 12
131 Montenegro 11974 T 12 12
132 Montenegro 11975 A 12 12
133 Montenegro 11976 C 12 12
134 Montenegro 11977 T 12 12
135 Montenegro 11978 A 12 12
136 Montenegro 11979 C 12 12
137 Montenegro 11980 T 12 12
138 Montenegro 11981 G 12 12
139 Montenegro 11982 A 12 12
140 Montenegro 11983 A 12 12
141 Montenegro 11984 G 12 12
142 Montenegro 11985 C 12 12
143 Montenegro 11986 C 12 12
144 Montenegro 11987 T 12 12
145 Montenegro 11988 T 12 12
146 Montenegro 11989 T 12 12
147 Montenegro 11990 G 12 12
148 Montenegro 11991 A 12 12
149 Montenegro 11992 A 12 12
150 Montenegro 11993 A 12 12
151 Montenegro 11994 A 12 12
152 Montenegro 11995 A 12 12
153 Montenegro 11996 A 12 12
154 Montenegro 11997 T 12 12
155 Montenegro 11998 G 12 12
156 Montenegro 11999 G 12 12
157 Montenegro 12000 T 12 12
158 Montenegro 12001 T 12 12
159 Montenegro 12002 T 12 12
160 Montenegro 12003 C 12 12
161 Montenegro 12004 A 12 12
162 Montenegro 12005 C 12 12
163 Montenegro 12006 T 12 12
164 Montenegro 12007 A 12 12
165 Montenegro 12008 C 12 12
166 Montenegro 12009 T 12 12
167 Montenegro 12010 T 12 12
168 Montenegro 12011 T 12 12
169 Montenegro 12012 C 12 12
170 Montenegro 12013 T 12 12
171 Montenegro 12014 G 12 12
172 Montenegro 12015 T 12 12
173 Montenegro 12016 T 12 12
174 Montenegro 12017 T 12 12
175 Montenegro 12018 T 12 12
176 Montenegro 12019 G 12 12
177 Montenegro 12020 C 12 12
178 Montenegro 12021 T 12 12
179 Montenegro 12022 T 12 12
180 Montenegro 12023 T 12 12
181 Montenegro 12024 C 12 12
182 Montenegro 12025 C 12 12
183 Montenegro 12026 A 12 12
184 Montenegro 12027 T 12 12
185 Montenegro 12028 G 12 12
186 Montenegro 12029 C 12 12
187 Montenegro 12030 A 12 12
188 Montenegro 12031 G 12 12
189 Montenegro 12032 G 12 12
190 Montenegro 12033 G 12 12
191 Montenegro 12034 T 12 12
192 Montenegro 12035 G 12 12
193 Montenegro 12036 C 12 12
194 Montenegro 12037 T 12 12
195 Montenegro 12038 G 12 12
196 Montenegro 12039 T 12 12
197 Montenegro 12040 A 12 12
198 Montenegro 12041 G 12 12
199 Montenegro 12042 A 12 12
200 Montenegro 12043 C 12 12
201 Montenegro 12044 A 12 12
202 Montenegro 12045 T 12 12
203 Montenegro 12046 A 12 12
204 Montenegro 12047 A 12 12
205 Montenegro 12048 A 12 12
206 Montenegro 12049 C 12 12
207 Montenegro 12050 A 12 12
208 Montenegro 12051 A 12 12
209 Montenegro 12052 G T 12 11 Lys3929Asn
210 Montenegro 12053 C 12 12
211 Montenegro 12054 T 12 12
212 Montenegro 12055 T 12 12
213 Montenegro 12056 T 12 12
214 Montenegro 12057 G 12 12
215 Montenegro 12058 T 12 12
216 Montenegro 12059 G 12 12
217 Montenegro 12060 A 12 12
218 Montenegro 12061 A 12 12
219 Montenegro 12062 G 12 12
220 Montenegro 12063 A 12 12
221 Montenegro 12064 A 12 12
222 Montenegro 12065 A 12 12
223 Montenegro 12066 T 12 12
224 Montenegro 12067 G 12 12
225 Montenegro 12068 C 12 12
226 Montenegro 12069 T 12 12
227 Montenegro 12070 G 12 12
228 Montenegro 12071 G 12 12
229 Montenegro 12072 A 12 12
230 Montenegro 12073 C 12 12
231 Montenegro 12074 A 12 12
232 Montenegro 12075 A 12 12
233 Montenegro 12076 C 12 12
234 Montenegro 12077 A 12 12
235 Montenegro 12078 G 12 12
236 Montenegro 12079 G 12 12
237 Montenegro 12080 G 12 12
238 Montenegro 12081 C 12 12
239 Montenegro 12082 A 12 12
240 Montenegro 12083 A 12 12
241 Montenegro 12084 C 12 12
242 Montenegro 12085 C 12 12
243 Montenegro 12086 T 12 12
244 Montenegro 12087 T 12 12
245 Montenegro 12088 A 12 12
246 Montenegro 12089 C 12 12
247 Montenegro 12090 A 12 12
248 Montenegro 12091 A 12 12