National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Mongolia 11843 T 7 7
1 Mongolia 11844 C 7 7
2 Mongolia 11845 T 7 7
3 Mongolia 11846 A 7 7
4 Mongolia 11847 A 7 7
5 Mongolia 11848 A 7 7
6 Mongolia 11849 A 7 7
7 Mongolia 11850 T 7 7
8 Mongolia 11851 G 7 7
9 Mongolia 11852 T 7 7
10 Mongolia 11853 C 7 7
11 Mongolia 11854 A 7 7
12 Mongolia 11855 G 7 7
13 Mongolia 11856 A 7 7
14 Mongolia 11857 T 7 7
15 Mongolia 11858 G 7 7
16 Mongolia 11859 T 7 7
17 Mongolia 11860 A 7 7
18 Mongolia 11861 A 7 7
19 Mongolia 11862 A 7 7
20 Mongolia 11863 G 7 7
21 Mongolia 11864 T 7 7
22 Mongolia 11865 G 7 7
23 Mongolia 11866 C 7 7
24 Mongolia 11867 A 7 7
25 Mongolia 11868 C 7 7
26 Mongolia 11869 A 7 7
27 Mongolia 11870 T 7 7
28 Mongolia 11871 C 7 7
29 Mongolia 11872 A 7 7
30 Mongolia 11873 G 7 7
31 Mongolia 11874 T 7 7
32 Mongolia 11875 A 7 7
33 Mongolia 11876 G 7 7
34 Mongolia 11877 T 7 7
35 Mongolia 11878 C 7 7
36 Mongolia 11879 T 7 7
37 Mongolia 11880 T 7 7
38 Mongolia 11881 A 7 7
39 Mongolia 11882 C 7 7
40 Mongolia 11883 T 7 7
41 Mongolia 11884 C 7 7
42 Mongolia 11885 T 7 7
43 Mongolia 11886 C 7 7
44 Mongolia 11887 A 7 7
45 Mongolia 11888 G 7 7
46 Mongolia 11889 T 7 7
47 Mongolia 11890 T 7 7
48 Mongolia 11891 T 7 7
49 Mongolia 11892 T 7 7
50 Mongolia 11893 G 7 7
51 Mongolia 11894 C 7 7
52 Mongolia 11895 A 7 7
53 Mongolia 11896 A 7 7
54 Mongolia 11897 C 7 7
55 Mongolia 11898 A 7 7
56 Mongolia 11899 A 7 7
57 Mongolia 11900 C 7 7
58 Mongolia 11901 T 7 7
59 Mongolia 11902 C 7 7
60 Mongolia 11903 A 7 7
61 Mongolia 11904 G 7 7
62 Mongolia 11905 A 7 7
63 Mongolia 11906 G 7 7
64 Mongolia 11907 T 7 7
65 Mongolia 11908 A 7 7
66 Mongolia 11909 G 7 7
67 Mongolia 11910 A 7 7
68 Mongolia 11911 A 7 7
69 Mongolia 11912 T 7 7
70 Mongolia 11913 C 7 7
71 Mongolia 11914 A 7 7
72 Mongolia 11915 T 7 7
73 Mongolia 11916 C 7 7
74 Mongolia 11917 A 7 7
75 Mongolia 11918 T 7 7
76 Mongolia 11919 C 7 7
77 Mongolia 11920 T 7 7
78 Mongolia 11921 A 7 7
79 Mongolia 11922 A 7 7
80 Mongolia 11923 A 7 7
81 Mongolia 11924 T 7 7
82 Mongolia 11925 T 7 7
83 Mongolia 11926 G 7 7
84 Mongolia 11927 T 7 7
85 Mongolia 11928 G 7 7
86 Mongolia 11929 G 7 7
87 Mongolia 11930 G 7 7
88 Mongolia 11931 C 7 7
89 Mongolia 11932 T 7 7
90 Mongolia 11933 C 7 7
91 Mongolia 11934 A 7 7
92 Mongolia 11935 A 7 7
93 Mongolia 11936 T 7 7
94 Mongolia 11937 G 7 7
95 Mongolia 11938 T 7 7
96 Mongolia 11939 G 7 7
97 Mongolia 11940 T 7 7
98 Mongolia 11941 C 7 7
99 Mongolia 11942 C 7 7
100 Mongolia 11943 A 7 7
101 Mongolia 11944 G 7 7
102 Mongolia 11945 T 7 7
103 Mongolia 11946 T 7 7
104 Mongolia 11947 A 7 7
105 Mongolia 11948 C 7 7
106 Mongolia 11949 A 7 7
107 Mongolia 11950 C 7 7
108 Mongolia 11951 A 7 7
109 Mongolia 11952 A 7 7
110 Mongolia 11953 T 7 7
111 Mongolia 11954 G 7 7
112 Mongolia 11955 A 7 7
113 Mongolia 11956 C 7 7
114 Mongolia 11957 A 7 7
115 Mongolia 11958 T 7 7
116 Mongolia 11959 T 7 7
117 Mongolia 11960 C 7 7
118 Mongolia 11961 T 7 7
119 Mongolia 11962 C 7 7
120 Mongolia 11963 T 7 7
121 Mongolia 11964 T 7 7
122 Mongolia 11965 A 7 7
123 Mongolia 11966 G 7 7
124 Mongolia 11967 C 7 7
125 Mongolia 11968 T 7 7
126 Mongolia 11969 A 7 7
127 Mongolia 11970 A 7 7
128 Mongolia 11971 A 7 7
129 Mongolia 11972 G 7 7
130 Mongolia 11973 A 7 7
131 Mongolia 11974 T 7 7
132 Mongolia 11975 A 7 7
133 Mongolia 11976 C 7 7
134 Mongolia 11977 T 7 7
135 Mongolia 11978 A 7 7
136 Mongolia 11979 C 7 7
137 Mongolia 11980 T 7 7
138 Mongolia 11981 G 7 7
139 Mongolia 11982 A 7 7
140 Mongolia 11983 A 7 7
141 Mongolia 11984 G 7 7
142 Mongolia 11985 C 7 7
143 Mongolia 11986 C 7 7
144 Mongolia 11987 T 7 7
145 Mongolia 11988 T 7 7
146 Mongolia 11989 T 7 7
147 Mongolia 11990 G 7 7
148 Mongolia 11991 A 7 7
149 Mongolia 11992 A 7 7
150 Mongolia 11993 A 7 7
151 Mongolia 11994 A 7 7
152 Mongolia 11995 A 7 7
153 Mongolia 11996 A 7 7
154 Mongolia 11997 T 7 7
155 Mongolia 11998 G 7 7
156 Mongolia 11999 G 7 7
157 Mongolia 12000 T 7 7
158 Mongolia 12001 T 7 7
159 Mongolia 12002 T 7 7
160 Mongolia 12003 C 7 7
161 Mongolia 12004 A 7 7
162 Mongolia 12005 C 7 7
163 Mongolia 12006 T 7 7
164 Mongolia 12007 A 7 7
165 Mongolia 12008 C 7 7
166 Mongolia 12009 T 7 7
167 Mongolia 12010 T 7 7
168 Mongolia 12011 T 7 7
169 Mongolia 12012 C 7 7
170 Mongolia 12013 T 7 7
171 Mongolia 12014 G 7 7
172 Mongolia 12015 T 7 7
173 Mongolia 12016 T 7 7
174 Mongolia 12017 T 7 7
175 Mongolia 12018 T 7 7
176 Mongolia 12019 G 7 7
177 Mongolia 12020 C 7 7
178 Mongolia 12021 T 7 7
179 Mongolia 12022 T 7 7
180 Mongolia 12023 T 7 7
181 Mongolia 12024 C 7 7
182 Mongolia 12025 C 7 7
183 Mongolia 12026 A 7 7
184 Mongolia 12027 T 7 7
185 Mongolia 12028 G 7 7
186 Mongolia 12029 C 7 7
187 Mongolia 12030 A 7 7
188 Mongolia 12031 G 7 7
189 Mongolia 12032 G 7 7
190 Mongolia 12033 G 7 7
191 Mongolia 12034 T 7 7
192 Mongolia 12035 G 7 7
193 Mongolia 12036 C 7 7
194 Mongolia 12037 T 7 7
195 Mongolia 12038 G 7 7
196 Mongolia 12039 T 7 7
197 Mongolia 12040 A 7 7
198 Mongolia 12041 G 7 7
199 Mongolia 12042 A 7 7
200 Mongolia 12043 C 7 7
201 Mongolia 12044 A 7 7
202 Mongolia 12045 T 7 7
203 Mongolia 12046 A 7 7
204 Mongolia 12047 A 7 7
205 Mongolia 12048 A 7 7
206 Mongolia 12049 C 7 7
207 Mongolia 12050 A 7 7
208 Mongolia 12051 A 7 7
209 Mongolia 12052 G 7 7
210 Mongolia 12053 C 7 7
211 Mongolia 12054 T 7 7
212 Mongolia 12055 T 7 7
213 Mongolia 12056 T 7 7
214 Mongolia 12057 G 7 7
215 Mongolia 12058 T 7 7
216 Mongolia 12059 G 7 7
217 Mongolia 12060 A 7 7
218 Mongolia 12061 A 7 7
219 Mongolia 12062 G 7 7
220 Mongolia 12063 A 7 7
221 Mongolia 12064 A 7 7
222 Mongolia 12065 A 7 7
223 Mongolia 12066 T 7 7
224 Mongolia 12067 G 7 7
225 Mongolia 12068 C 7 7
226 Mongolia 12069 T 7 7
227 Mongolia 12070 G 7 7
228 Mongolia 12071 G 7 7
229 Mongolia 12072 A 7 7
230 Mongolia 12073 C 7 7
231 Mongolia 12074 A 7 7
232 Mongolia 12075 A 7 7
233 Mongolia 12076 C 7 7
234 Mongolia 12077 A 7 7
235 Mongolia 12078 G 7 7
236 Mongolia 12079 G 7 7
237 Mongolia 12080 G 7 7
238 Mongolia 12081 C 7 7
239 Mongolia 12082 A 7 7
240 Mongolia 12083 A 7 7
241 Mongolia 12084 C 7 7
242 Mongolia 12085 C 7 7
243 Mongolia 12086 T 7 7
244 Mongolia 12087 T 7 7
245 Mongolia 12088 A 7 7
246 Mongolia 12089 C 7 7
247 Mongolia 12090 A 7 7
248 Mongolia 12091 A 7 7