National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Moldova 11843 T 9 9
1 Moldova 11844 C 9 9
2 Moldova 11845 T 9 9
3 Moldova 11846 A 9 9
4 Moldova 11847 A 9 9
5 Moldova 11848 A 9 9
6 Moldova 11849 A 9 9
7 Moldova 11850 T 9 9
8 Moldova 11851 G 9 9
9 Moldova 11852 T 9 9
10 Moldova 11853 C 9 9
11 Moldova 11854 A 9 9
12 Moldova 11855 G 9 9
13 Moldova 11856 A 9 9
14 Moldova 11857 T 9 9
15 Moldova 11858 G 9 9
16 Moldova 11859 T 9 9
17 Moldova 11860 A 9 9
18 Moldova 11861 A 9 9
19 Moldova 11862 A 9 9
20 Moldova 11863 G 9 9
21 Moldova 11864 T 9 9
22 Moldova 11865 G 9 9
23 Moldova 11866 C 9 9
24 Moldova 11867 A 9 9
25 Moldova 11868 C 9 9
26 Moldova 11869 A 9 9
27 Moldova 11870 T 9 9
28 Moldova 11871 C 9 9
29 Moldova 11872 A 9 9
30 Moldova 11873 G 9 9
31 Moldova 11874 T 9 9
32 Moldova 11875 A 9 9
33 Moldova 11876 G 9 9
34 Moldova 11877 T 9 9
35 Moldova 11878 C 9 9
36 Moldova 11879 T 9 9
37 Moldova 11880 T 9 9
38 Moldova 11881 A 9 9
39 Moldova 11882 C 9 9
40 Moldova 11883 T 9 9
41 Moldova 11884 C 9 9
42 Moldova 11885 T 9 9
43 Moldova 11886 C 9 9
44 Moldova 11887 A 9 9
45 Moldova 11888 G 9 9
46 Moldova 11889 T 9 9
47 Moldova 11890 T 9 9
48 Moldova 11891 T 9 9
49 Moldova 11892 T 9 9
50 Moldova 11893 G 9 9
51 Moldova 11894 C 9 9
52 Moldova 11895 A 9 9
53 Moldova 11896 A 9 9
54 Moldova 11897 C 9 9
55 Moldova 11898 A 9 9
56 Moldova 11899 A 9 9
57 Moldova 11900 C 9 9
58 Moldova 11901 T 9 9
59 Moldova 11902 C 9 9
60 Moldova 11903 A 9 9
61 Moldova 11904 G 9 9
62 Moldova 11905 A 9 9
63 Moldova 11906 G 9 9
64 Moldova 11907 T 9 9
65 Moldova 11908 A 9 9
66 Moldova 11909 G 9 9
67 Moldova 11910 A 9 9
68 Moldova 11911 A 9 9
69 Moldova 11912 T 9 9
70 Moldova 11913 C 9 9
71 Moldova 11914 A 9 9
72 Moldova 11915 T 9 9
73 Moldova 11916 C 9 9
74 Moldova 11917 A 9 9
75 Moldova 11918 T 9 9
76 Moldova 11919 C 9 9
77 Moldova 11920 T 9 9
78 Moldova 11921 A 9 9
79 Moldova 11922 A 9 9
80 Moldova 11923 A 9 9
81 Moldova 11924 T 9 9
82 Moldova 11925 T 9 9
83 Moldova 11926 G 9 9
84 Moldova 11927 T 9 9
85 Moldova 11928 G 9 9
86 Moldova 11929 G 9 9
87 Moldova 11930 G 9 9
88 Moldova 11931 C 9 9
89 Moldova 11932 T 9 9
90 Moldova 11933 C 9 9
91 Moldova 11934 A 9 9
92 Moldova 11935 A 9 9
93 Moldova 11936 T 9 9
94 Moldova 11937 G 9 9
95 Moldova 11938 T 9 9
96 Moldova 11939 G 9 9
97 Moldova 11940 T 9 9
98 Moldova 11941 C 9 9
99 Moldova 11942 C 9 9
100 Moldova 11943 A 9 9
101 Moldova 11944 G 9 9
102 Moldova 11945 T 9 9
103 Moldova 11946 T 9 9
104 Moldova 11947 A 9 9
105 Moldova 11948 C 9 9
106 Moldova 11949 A 9 9
107 Moldova 11950 C 9 9
108 Moldova 11951 A 9 9
109 Moldova 11952 A 9 9
110 Moldova 11953 T 9 9
111 Moldova 11954 G 9 9
112 Moldova 11955 A 9 9
113 Moldova 11956 C 9 9
114 Moldova 11957 A 9 9
115 Moldova 11958 T 9 9
116 Moldova 11959 T 9 9
117 Moldova 11960 C 9 9
118 Moldova 11961 T 9 9
119 Moldova 11962 C 9 9
120 Moldova 11963 T 9 9
121 Moldova 11964 T 9 9
122 Moldova 11965 A 9 9
123 Moldova 11966 G 9 9
124 Moldova 11967 C 9 9
125 Moldova 11968 T 9 9
126 Moldova 11969 A 9 9
127 Moldova 11970 A 9 9
128 Moldova 11971 A 9 9
129 Moldova 11972 G 9 9
130 Moldova 11973 A 9 9
131 Moldova 11974 T 9 9
132 Moldova 11975 A 9 9
133 Moldova 11976 C 9 9
134 Moldova 11977 T 9 9
135 Moldova 11978 A 9 9
136 Moldova 11979 C 9 9
137 Moldova 11980 T 9 9
138 Moldova 11981 G 9 9
139 Moldova 11982 A 9 9
140 Moldova 11983 A 9 9
141 Moldova 11984 G 9 9
142 Moldova 11985 C 9 9
143 Moldova 11986 C 9 9
144 Moldova 11987 T 9 9
145 Moldova 11988 T 9 9
146 Moldova 11989 T 9 9
147 Moldova 11990 G 9 9
148 Moldova 11991 A 9 9
149 Moldova 11992 A 9 9
150 Moldova 11993 A 9 9
151 Moldova 11994 A 9 9
152 Moldova 11995 A 9 9
153 Moldova 11996 A 9 9
154 Moldova 11997 T 9 9
155 Moldova 11998 G 9 9
156 Moldova 11999 G 9 9
157 Moldova 12000 T 9 9
158 Moldova 12001 T 9 9
159 Moldova 12002 T 9 9
160 Moldova 12003 C 9 9
161 Moldova 12004 A 9 9
162 Moldova 12005 C 9 9
163 Moldova 12006 T 9 9
164 Moldova 12007 A 9 9
165 Moldova 12008 C 9 9
166 Moldova 12009 T 9 9
167 Moldova 12010 T 9 9
168 Moldova 12011 T 9 9
169 Moldova 12012 C 9 9
170 Moldova 12013 T 9 9
171 Moldova 12014 G 9 9
172 Moldova 12015 T 9 9
173 Moldova 12016 T 9 9
174 Moldova 12017 T 9 9
175 Moldova 12018 T 9 9
176 Moldova 12019 G 9 9
177 Moldova 12020 C 9 9
178 Moldova 12021 T 9 9
179 Moldova 12022 T 9 9
180 Moldova 12023 T 9 9
181 Moldova 12024 C 9 9
182 Moldova 12025 C 9 9
183 Moldova 12026 A 9 9
184 Moldova 12027 T 9 9
185 Moldova 12028 G 9 9
186 Moldova 12029 C 9 9
187 Moldova 12030 A 9 9
188 Moldova 12031 G 9 9
189 Moldova 12032 G 9 9
190 Moldova 12033 G 9 9
191 Moldova 12034 T 9 9
192 Moldova 12035 G 9 9
193 Moldova 12036 C 9 9
194 Moldova 12037 T 9 9
195 Moldova 12038 G 9 9
196 Moldova 12039 T 9 9
197 Moldova 12040 A 9 9
198 Moldova 12041 G 9 9
199 Moldova 12042 A 9 9
200 Moldova 12043 C 9 9
201 Moldova 12044 A 9 9
202 Moldova 12045 T 9 9
203 Moldova 12046 A 9 9
204 Moldova 12047 A 9 9
205 Moldova 12048 A 9 9
206 Moldova 12049 C 9 9
207 Moldova 12050 A 9 9
208 Moldova 12051 A 9 9
209 Moldova 12052 G 9 9
210 Moldova 12053 C 9 9
211 Moldova 12054 T 9 9
212 Moldova 12055 T 9 9
213 Moldova 12056 T 9 9
214 Moldova 12057 G 9 9
215 Moldova 12058 T 9 9
216 Moldova 12059 G 9 9
217 Moldova 12060 A 9 9
218 Moldova 12061 A 9 9
219 Moldova 12062 G 9 9
220 Moldova 12063 A 9 9
221 Moldova 12064 A 9 9
222 Moldova 12065 A 9 9
223 Moldova 12066 T 9 9
224 Moldova 12067 G 9 9
225 Moldova 12068 C 9 9
226 Moldova 12069 T 9 9
227 Moldova 12070 G 9 9
228 Moldova 12071 G 9 9
229 Moldova 12072 A 9 9
230 Moldova 12073 C 9 9
231 Moldova 12074 A 9 9
232 Moldova 12075 A 9 9
233 Moldova 12076 C 9 9
234 Moldova 12077 A 9 9
235 Moldova 12078 G 9 9
236 Moldova 12079 G 9 9
237 Moldova 12080 G 9 9
238 Moldova 12081 C 9 9
239 Moldova 12082 A 9 9
240 Moldova 12083 A 9 9
241 Moldova 12084 C 9 9
242 Moldova 12085 C 9 9
243 Moldova 12086 T 9 9
244 Moldova 12087 T 9 9
245 Moldova 12088 A 9 9
246 Moldova 12089 C 9 9
247 Moldova 12090 A 9 9
248 Moldova 12091 A 9 9