National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                               1    
C   9   1                         1      
D   15                                    
E   15       1                            
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45         2         4                
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                   1                
T   12                                    
V   27                                 2  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Mexico 11843 T 595 595
1 Mexico 11844 C 595 595
2 Mexico 11845 T 595 595
3 Mexico 11846 A 595 595
4 Mexico 11847 A 595 595
5 Mexico 11848 A 595 595
6 Mexico 11849 A 595 595
7 Mexico 11850 T 595 595
8 Mexico 11851 G 595 595
9 Mexico 11852 T 595 595
10 Mexico 11853 C 595 595
11 Mexico 11854 A 595 595
12 Mexico 11855 G 595 595
13 Mexico 11856 A 595 595
14 Mexico 11857 T 595 595
15 Mexico 11858 G 595 595
16 Mexico 11859 T 595 595
17 Mexico 11860 A 595 595
18 Mexico 11861 A 595 595
19 Mexico 11862 A 595 595
20 Mexico 11863 G 595 595
21 Mexico 11864 T 595 595
22 Mexico 11865 G 595 595
23 Mexico 11866 C T 595 586 Cys3867Cys
24 Mexico 11867 A 595 595
25 Mexico 11868 C 595 595
26 Mexico 11869 A 595 595
27 Mexico 11870 T 595 595
28 Mexico 11871 C 595 595
29 Mexico 11872 A 595 595
30 Mexico 11873 G 595 595
31 Mexico 11874 T 595 595
32 Mexico 11875 A 595 595
33 Mexico 11876 G 595 595
34 Mexico 11877 T 595 595
35 Mexico 11878 C T 595 594 Val3871Val
36 Mexico 11879 T 595 595
37 Mexico 11880 T 595 595
38 Mexico 11881 A 595 595
39 Mexico 11882 C 595 595
40 Mexico 11883 T 595 595
41 Mexico 11884 C 595 595
42 Mexico 11885 T 595 595
43 Mexico 11886 C 595 595
44 Mexico 11887 A 595 595
45 Mexico 11888 G 595 595
46 Mexico 11889 T 595 595
47 Mexico 11890 T 598 598
48 Mexico 11891 T 598 598
49 Mexico 11892 T 598 598
50 Mexico 11893 G 598 598
51 Mexico 11894 C 598 598
52 Mexico 11895 A 598 598
53 Mexico 11896 A 598 598
54 Mexico 11897 C 598 598
55 Mexico 11898 A 598 598
56 Mexico 11899 A 598 598
57 Mexico 11900 C 598 598
58 Mexico 11901 T 598 598
59 Mexico 11902 C 598 598
60 Mexico 11903 A 598 598
61 Mexico 11904 G 598 598
62 Mexico 11905 A 598 598
63 Mexico 11906 G 598 598
64 Mexico 11907 T 598 598
65 Mexico 11908 A 598 598
66 Mexico 11909 G 598 598
67 Mexico 11910 A 598 598
68 Mexico 11911 A 598 598
69 Mexico 11912 T 598 598
70 Mexico 11913 C 598 598
71 Mexico 11914 A 598 598
72 Mexico 11915 T 598 598
73 Mexico 11916 C T 598 594 Ser3884Leu
74 Mexico 11917 A 598 598
75 Mexico 11918 T 598 598
76 Mexico 11919 C 598 598
77 Mexico 11920 T 598 598
78 Mexico 11921 A 598 598
79 Mexico 11922 A 598 598
80 Mexico 11923 A 598 598
81 Mexico 11924 T 598 598
82 Mexico 11925 T 598 598
83 Mexico 11926 G 598 598
84 Mexico 11927 T 598 598
85 Mexico 11928 G 597 597
86 Mexico 11929 G 597 597
87 Mexico 11930 G 597 597
88 Mexico 11931 C 597 597
89 Mexico 11932 T 597 597
90 Mexico 11933 C 597 597
91 Mexico 11934 A 597 597
92 Mexico 11935 A 597 597
93 Mexico 11936 T 597 597
94 Mexico 11937 G 597 597
95 Mexico 11938 T 597 597
96 Mexico 11939 G 597 597
97 Mexico 11940 T 597 597
98 Mexico 11941 C T 597 595 Val3892Val
99 Mexico 11942 C 597 597
100 Mexico 11943 A 597 597
101 Mexico 11944 G 597 597
102 Mexico 11945 T 597 597
103 Mexico 11946 T 597 597
104 Mexico 11947 A G 597 596 Leu3894Leu
105 Mexico 11948 C 597 597
106 Mexico 11949 A 597 597
107 Mexico 11950 C 597 597
108 Mexico 11951 A 597 597
109 Mexico 11952 A 597 597
110 Mexico 11953 T 597 597
111 Mexico 11954 G 597 597
112 Mexico 11955 A 597 597
113 Mexico 11956 C 597 597
114 Mexico 11957 A 597 597
115 Mexico 11958 T 597 597
116 Mexico 11959 T 597 597
117 Mexico 11960 C 597 597
118 Mexico 11961 T 597 597
119 Mexico 11962 C T 597 596 Leu3899Leu
120 Mexico 11963 T 597 597
121 Mexico 11964 T 597 597
122 Mexico 11965 A 597 597
123 Mexico 11966 G 597 597
124 Mexico 11967 C 597 597
125 Mexico 11968 T 597 597
126 Mexico 11969 A 597 597
127 Mexico 11970 A 597 597
128 Mexico 11971 A 597 597
129 Mexico 11972 G 597 597
130 Mexico 11973 A 597 597
131 Mexico 11974 T 597 597
132 Mexico 11975 A 597 597
133 Mexico 11976 C 597 597
134 Mexico 11977 T 597 597
135 Mexico 11978 A 597 597
136 Mexico 11979 C 597 597
137 Mexico 11980 T 597 597
138 Mexico 11981 G 597 597
139 Mexico 11982 A 597 597
140 Mexico 11983 A 597 597
141 Mexico 11984 G 597 597
142 Mexico 11985 C 597 597
143 Mexico 11986 C 597 597
144 Mexico 11987 T 597 597
145 Mexico 11988 T 597 597
146 Mexico 11989 T 597 597
147 Mexico 11990 G 597 597
148 Mexico 11991 A 597 597
149 Mexico 11992 A 597 597
150 Mexico 11993 A 597 597
151 Mexico 11994 A 597 597
152 Mexico 11995 A 597 597
153 Mexico 11996 A 597 597
154 Mexico 11997 T 597 597
155 Mexico 11998 G 597 597
156 Mexico 11999 G 597 597
157 Mexico 12000 T 597 597
158 Mexico 12001 T 597 597
159 Mexico 12002 T 597 597
160 Mexico 12003 C 597 597
161 Mexico 12004 A 597 597
162 Mexico 12005 C T 597 596 Leu3914Leu
163 Mexico 12006 T 597 597
164 Mexico 12007 A 597 597
165 Mexico 12008 C T 597 595 Leu3915Phe
166 Mexico 12009 T 597 597
167 Mexico 12010 T 597 597
168 Mexico 12011 T 597 597
169 Mexico 12012 C 597 597
170 Mexico 12013 T 597 597
171 Mexico 12014 G 597 597
172 Mexico 12015 T 597 597
173 Mexico 12016 T 597 597
174 Mexico 12017 T 597 597
175 Mexico 12018 T 597 597
176 Mexico 12019 G 597 597
177 Mexico 12020 C 597 597
178 Mexico 12021 T 597 597
179 Mexico 12022 T 597 597
180 Mexico 12023 T 597 597
181 Mexico 12024 C 597 597
182 Mexico 12025 C 597 597
183 Mexico 12026 A 597 597
184 Mexico 12027 T 597 597
185 Mexico 12028 G 597 597
186 Mexico 12029 C 597 597
187 Mexico 12030 A 597 597
188 Mexico 12031 G 597 597
189 Mexico 12032 G 597 597
190 Mexico 12033 G 597 597
191 Mexico 12034 T 597 597
192 Mexico 12035 G 597 597
193 Mexico 12036 C 597 597
194 Mexico 12037 T 597 597
195 Mexico 12038 G 597 597
196 Mexico 12039 T 597 597
197 Mexico 12040 A 597 597
198 Mexico 12041 G 597 597
199 Mexico 12042 A 597 597
200 Mexico 12043 C 597 597
201 Mexico 12044 A 597 597
202 Mexico 12045 T 597 597
203 Mexico 12046 A 597 597
204 Mexico 12047 A 597 597
205 Mexico 12048 A 597 597
206 Mexico 12049 C 597 597
207 Mexico 12050 A 597 597
208 Mexico 12051 A 597 597
209 Mexico 12052 G 597 597
210 Mexico 12053 C T 597 596 Leu3930Phe
211 Mexico 12054 T 597 597
212 Mexico 12055 T 597 597
213 Mexico 12056 T A 597 596 Cys3931Ser
214 Mexico 12057 G 597 597
215 Mexico 12058 T 597 597
216 Mexico 12059 G 597 597
217 Mexico 12060 A 597 597
218 Mexico 12061 A 597 597
219 Mexico 12062 G 597 597
220 Mexico 12063 A 597 597
221 Mexico 12064 A G 597 596 Glu3933Glu
222 Mexico 12065 A 597 597
223 Mexico 12066 T 597 597
224 Mexico 12067 G 597 597
225 Mexico 12068 C 597 597
226 Mexico 12069 T 597 597
227 Mexico 12070 G T 597 596 Leu3935Leu
228 Mexico 12071 G 597 597
229 Mexico 12072 A 597 597
230 Mexico 12073 C 597 597
231 Mexico 12074 A 597 597
232 Mexico 12075 A 597 597
233 Mexico 12076 C 597 597
234 Mexico 12077 A 597 597
235 Mexico 12078 G 597 597
236 Mexico 12079 G 597 597
237 Mexico 12080 G A 597 596 Ala3939Thr
238 Mexico 12081 C 597 597
239 Mexico 12082 A 597 597
240 Mexico 12083 A 597 597
241 Mexico 12084 C 597 597
242 Mexico 12085 C 597 597
243 Mexico 12086 T 597 597
244 Mexico 12087 T 597 597
245 Mexico 12088 A 597 597
246 Mexico 12089 C 597 597
247 Mexico 12090 A 597 597
248 Mexico 12091 A 597 597