National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Malta 11843 T 10 10
1 Malta 11844 C 10 10
2 Malta 11845 T 10 10
3 Malta 11846 A 10 10
4 Malta 11847 A 10 10
5 Malta 11848 A 10 10
6 Malta 11849 A 10 10
7 Malta 11850 T 10 10
8 Malta 11851 G 10 10
9 Malta 11852 T 10 10
10 Malta 11853 C 10 10
11 Malta 11854 A 10 10
12 Malta 11855 G 10 10
13 Malta 11856 A 10 10
14 Malta 11857 T 10 10
15 Malta 11858 G 10 10
16 Malta 11859 T 10 10
17 Malta 11860 A 10 10
18 Malta 11861 A 10 10
19 Malta 11862 A 10 10
20 Malta 11863 G 10 10
21 Malta 11864 T 10 10
22 Malta 11865 G 10 10
23 Malta 11866 C 10 10
24 Malta 11867 A 10 10
25 Malta 11868 C 10 10
26 Malta 11869 A 10 10
27 Malta 11870 T 10 10
28 Malta 11871 C 10 10
29 Malta 11872 A 10 10
30 Malta 11873 G 10 10
31 Malta 11874 T 10 10
32 Malta 11875 A 10 10
33 Malta 11876 G 10 10
34 Malta 11877 T 10 10
35 Malta 11878 C 10 10
36 Malta 11879 T 10 10
37 Malta 11880 T 10 10
38 Malta 11881 A 10 10
39 Malta 11882 C 10 10
40 Malta 11883 T 10 10
41 Malta 11884 C 10 10
42 Malta 11885 T 10 10
43 Malta 11886 C 10 10
44 Malta 11887 A 10 10
45 Malta 11888 G 10 10
46 Malta 11889 T 10 10
47 Malta 11890 T 10 10
48 Malta 11891 T 10 10
49 Malta 11892 T 10 10
50 Malta 11893 G 10 10
51 Malta 11894 C 10 10
52 Malta 11895 A 10 10
53 Malta 11896 A 10 10
54 Malta 11897 C 10 10
55 Malta 11898 A 10 10
56 Malta 11899 A 10 10
57 Malta 11900 C 10 10
58 Malta 11901 T 10 10
59 Malta 11902 C 10 10
60 Malta 11903 A 10 10
61 Malta 11904 G 10 10
62 Malta 11905 A 10 10
63 Malta 11906 G 10 10
64 Malta 11907 T 10 10
65 Malta 11908 A 10 10
66 Malta 11909 G 10 10
67 Malta 11910 A 10 10
68 Malta 11911 A 10 10
69 Malta 11912 T 10 10
70 Malta 11913 C 10 10
71 Malta 11914 A 10 10
72 Malta 11915 T 10 10
73 Malta 11916 C 10 10
74 Malta 11917 A 10 10
75 Malta 11918 T 10 10
76 Malta 11919 C 10 10
77 Malta 11920 T 10 10
78 Malta 11921 A 10 10
79 Malta 11922 A 10 10
80 Malta 11923 A 10 10
81 Malta 11924 T 10 10
82 Malta 11925 T 10 10
83 Malta 11926 G 10 10
84 Malta 11927 T 10 10
85 Malta 11928 G 10 10
86 Malta 11929 G 10 10
87 Malta 11930 G 10 10
88 Malta 11931 C 10 10
89 Malta 11932 T 10 10
90 Malta 11933 C 10 10
91 Malta 11934 A 10 10
92 Malta 11935 A 10 10
93 Malta 11936 T 10 10
94 Malta 11937 G 10 10
95 Malta 11938 T 10 10
96 Malta 11939 G 10 10
97 Malta 11940 T 10 10
98 Malta 11941 C 10 10
99 Malta 11942 C 10 10
100 Malta 11943 A 10 10
101 Malta 11944 G 10 10
102 Malta 11945 T 10 10
103 Malta 11946 T 10 10
104 Malta 11947 A 10 10
105 Malta 11948 C 10 10
106 Malta 11949 A 10 10
107 Malta 11950 C 10 10
108 Malta 11951 A 10 10
109 Malta 11952 A 10 10
110 Malta 11953 T 10 10
111 Malta 11954 G 10 10
112 Malta 11955 A 10 10
113 Malta 11956 C 10 10
114 Malta 11957 A 10 10
115 Malta 11958 T 10 10
116 Malta 11959 T 10 10
117 Malta 11960 C 10 10
118 Malta 11961 T 10 10
119 Malta 11962 C 10 10
120 Malta 11963 T 10 10
121 Malta 11964 T 10 10
122 Malta 11965 A 10 10
123 Malta 11966 G 10 10
124 Malta 11967 C 10 10
125 Malta 11968 T 10 10
126 Malta 11969 A 10 10
127 Malta 11970 A 10 10
128 Malta 11971 A 10 10
129 Malta 11972 G 10 10
130 Malta 11973 A 10 10
131 Malta 11974 T 10 10
132 Malta 11975 A 10 10
133 Malta 11976 C 10 10
134 Malta 11977 T 10 10
135 Malta 11978 A 10 10
136 Malta 11979 C 10 10
137 Malta 11980 T 10 10
138 Malta 11981 G 10 10
139 Malta 11982 A 10 10
140 Malta 11983 A 10 10
141 Malta 11984 G 10 10
142 Malta 11985 C 10 10
143 Malta 11986 C 10 10
144 Malta 11987 T 10 10
145 Malta 11988 T 10 10
146 Malta 11989 T 10 10
147 Malta 11990 G 10 10
148 Malta 11991 A 10 10
149 Malta 11992 A 10 10
150 Malta 11993 A 10 10
151 Malta 11994 A 10 10
152 Malta 11995 A 10 10
153 Malta 11996 A 10 10
154 Malta 11997 T 10 10
155 Malta 11998 G 10 10
156 Malta 11999 G 10 10
157 Malta 12000 T 10 10
158 Malta 12001 T 10 10
159 Malta 12002 T 10 10
160 Malta 12003 C 10 10
161 Malta 12004 A 10 10
162 Malta 12005 C 10 10
163 Malta 12006 T 10 10
164 Malta 12007 A 10 10
165 Malta 12008 C 10 10
166 Malta 12009 T 10 10
167 Malta 12010 T 10 10
168 Malta 12011 T 10 10
169 Malta 12012 C 10 10
170 Malta 12013 T 10 10
171 Malta 12014 G 10 10
172 Malta 12015 T 10 10
173 Malta 12016 T 10 10
174 Malta 12017 T 10 10
175 Malta 12018 T 10 10
176 Malta 12019 G 10 10
177 Malta 12020 C 10 10
178 Malta 12021 T 10 10
179 Malta 12022 T 10 10
180 Malta 12023 T 10 10
181 Malta 12024 C 10 10
182 Malta 12025 C 10 10
183 Malta 12026 A 10 10
184 Malta 12027 T 10 10
185 Malta 12028 G 10 10
186 Malta 12029 C 10 10
187 Malta 12030 A 10 10
188 Malta 12031 G 10 10
189 Malta 12032 G 10 10
190 Malta 12033 G 10 10
191 Malta 12034 T 10 10
192 Malta 12035 G 10 10
193 Malta 12036 C 10 10
194 Malta 12037 T 10 10
195 Malta 12038 G 10 10
196 Malta 12039 T 10 10
197 Malta 12040 A 10 10
198 Malta 12041 G 10 10
199 Malta 12042 A 10 10
200 Malta 12043 C 10 10
201 Malta 12044 A 10 10
202 Malta 12045 T 10 10
203 Malta 12046 A 10 10
204 Malta 12047 A 10 10
205 Malta 12048 A 10 10
206 Malta 12049 C 10 10
207 Malta 12050 A 10 10
208 Malta 12051 A 10 10
209 Malta 12052 G 10 10
210 Malta 12053 C 10 10
211 Malta 12054 T 10 10
212 Malta 12055 T 10 10
213 Malta 12056 T 10 10
214 Malta 12057 G 10 10
215 Malta 12058 T 10 10
216 Malta 12059 G 10 10
217 Malta 12060 A 10 10
218 Malta 12061 A 10 10
219 Malta 12062 G 10 10
220 Malta 12063 A 10 10
221 Malta 12064 A 10 10
222 Malta 12065 A 10 10
223 Malta 12066 T 10 10
224 Malta 12067 G 10 10
225 Malta 12068 C 10 10
226 Malta 12069 T 10 10
227 Malta 12070 G 10 10
228 Malta 12071 G 10 10
229 Malta 12072 A 10 10
230 Malta 12073 C 10 10
231 Malta 12074 A 10 10
232 Malta 12075 A 10 10
233 Malta 12076 C 10 10
234 Malta 12077 A 10 10
235 Malta 12078 G 10 10
236 Malta 12079 G 10 10
237 Malta 12080 G 10 10
238 Malta 12081 C 10 10
239 Malta 12082 A 10 10
240 Malta 12083 A 10 10
241 Malta 12084 C 10 10
242 Malta 12085 C 10 10
243 Malta 12086 T 10 10
244 Malta 12087 T 10 10
245 Malta 12088 A 10 10
246 Malta 12089 C 10 10
247 Malta 12090 A 10 10
248 Malta 12091 A 10 10