National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                 1                  
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                   1                
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Mali 11843 T 24 24
1 Mali 11844 C 24 24
2 Mali 11845 T 24 24
3 Mali 11846 A 24 24
4 Mali 11847 A 24 24
5 Mali 11848 A 24 24
6 Mali 11849 A 24 24
7 Mali 11850 T 24 24
8 Mali 11851 G 24 24
9 Mali 11852 T 24 24
10 Mali 11853 C 24 24
11 Mali 11854 A 24 24
12 Mali 11855 G 24 24
13 Mali 11856 A 24 24
14 Mali 11857 T 24 24
15 Mali 11858 G 24 24
16 Mali 11859 T 24 24
17 Mali 11860 A 24 24
18 Mali 11861 A 24 24
19 Mali 11862 A 24 24
20 Mali 11863 G 24 24
21 Mali 11864 T 24 24
22 Mali 11865 G 24 24
23 Mali 11866 C 24 24
24 Mali 11867 A 24 24
25 Mali 11868 C 24 24
26 Mali 11869 A 24 24
27 Mali 11870 T 24 24
28 Mali 11871 C 24 24
29 Mali 11872 A 24 24
30 Mali 11873 G 24 24
31 Mali 11874 T 24 24
32 Mali 11875 A 24 24
33 Mali 11876 G 24 24
34 Mali 11877 T 24 24
35 Mali 11878 C 24 24
36 Mali 11879 T 24 24
37 Mali 11880 T 24 24
38 Mali 11881 A 24 24
39 Mali 11882 C 24 24
40 Mali 11883 T 24 24
41 Mali 11884 C 24 24
42 Mali 11885 T 24 24
43 Mali 11886 C 24 24
44 Mali 11887 A 24 24
45 Mali 11888 G 24 24
46 Mali 11889 T 24 24
47 Mali 11890 T 24 24
48 Mali 11891 T 24 24
49 Mali 11892 T 24 24
50 Mali 11893 G 24 24
51 Mali 11894 C 24 24
52 Mali 11895 A 24 24
53 Mali 11896 A 24 24
54 Mali 11897 C 24 24
55 Mali 11898 A 24 24
56 Mali 11899 A 24 24
57 Mali 11900 C 24 24
58 Mali 11901 T 24 24
59 Mali 11902 C 24 24
60 Mali 11903 A 24 24
61 Mali 11904 G 24 24
62 Mali 11905 A 24 24
63 Mali 11906 G 24 24
64 Mali 11907 T 24 24
65 Mali 11908 A 24 24
66 Mali 11909 G 24 24
67 Mali 11910 A 24 24
68 Mali 11911 A 24 24
69 Mali 11912 T 24 24
70 Mali 11913 C 24 24
71 Mali 11914 A 24 24
72 Mali 11915 T 24 24
73 Mali 11916 C T 24 23 Ser3884Leu
74 Mali 11917 A 24 24
75 Mali 11918 T 24 24
76 Mali 11919 C 24 24
77 Mali 11920 T 24 24
78 Mali 11921 A 24 24
79 Mali 11922 A 24 24
80 Mali 11923 A 24 24
81 Mali 11924 T 24 24
82 Mali 11925 T 24 24
83 Mali 11926 G 24 24
84 Mali 11927 T 24 24
85 Mali 11928 G 24 24
86 Mali 11929 G 24 24
87 Mali 11930 G 24 24
88 Mali 11931 C 24 24
89 Mali 11932 T 24 24
90 Mali 11933 C 24 24
91 Mali 11934 A 24 24
92 Mali 11935 A 24 24
93 Mali 11936 T 24 24
94 Mali 11937 G 24 24
95 Mali 11938 T 24 24
96 Mali 11939 G 24 24
97 Mali 11940 T 24 24
98 Mali 11941 C 24 24
99 Mali 11942 C 24 24
100 Mali 11943 A 24 24
101 Mali 11944 G 24 24
102 Mali 11945 T 24 24
103 Mali 11946 T 24 24
104 Mali 11947 A 24 24
105 Mali 11948 C 24 24
106 Mali 11949 A 24 24
107 Mali 11950 C 24 24
108 Mali 11951 A 24 24
109 Mali 11952 A 24 24
110 Mali 11953 T 24 24
111 Mali 11954 G 24 24
112 Mali 11955 A 24 24
113 Mali 11956 C 24 24
114 Mali 11957 A 24 24
115 Mali 11958 T 24 24
116 Mali 11959 T 24 24
117 Mali 11960 C 24 24
118 Mali 11961 T 24 24
119 Mali 11962 C 24 24
120 Mali 11963 T 24 24
121 Mali 11964 T 24 24
122 Mali 11965 A 24 24
123 Mali 11966 G 24 24
124 Mali 11967 C 24 24
125 Mali 11968 T 24 24
126 Mali 11969 A 24 24
127 Mali 11970 A 24 24
128 Mali 11971 A 24 24
129 Mali 11972 G 24 24
130 Mali 11973 A 24 24
131 Mali 11974 T 24 24
132 Mali 11975 A 24 24
133 Mali 11976 C 24 24
134 Mali 11977 T 24 24
135 Mali 11978 A 24 24
136 Mali 11979 C 24 24
137 Mali 11980 T 24 24
138 Mali 11981 G 24 24
139 Mali 11982 A 24 24
140 Mali 11983 A 24 24
141 Mali 11984 G 24 24
142 Mali 11985 C 24 24
143 Mali 11986 C 24 24
144 Mali 11987 T 24 24
145 Mali 11988 T 24 24
146 Mali 11989 T 24 24
147 Mali 11990 G 24 24
148 Mali 11991 A 24 24
149 Mali 11992 A 24 24
150 Mali 11993 A 24 24
151 Mali 11994 A 24 24
152 Mali 11995 A 24 24
153 Mali 11996 A 24 24
154 Mali 11997 T 24 24
155 Mali 11998 G 24 24
156 Mali 11999 G 24 24
157 Mali 12000 T 24 24
158 Mali 12001 T 24 24
159 Mali 12002 T 24 24
160 Mali 12003 C 24 24
161 Mali 12004 A 24 24
162 Mali 12005 C 24 24
163 Mali 12006 T 24 24
164 Mali 12007 A 24 24
165 Mali 12008 C 24 24
166 Mali 12009 T 24 24
167 Mali 12010 T 24 24
168 Mali 12011 T 24 24
169 Mali 12012 C 24 24
170 Mali 12013 T 24 24
171 Mali 12014 G 24 24
172 Mali 12015 T 24 24
173 Mali 12016 T 24 24
174 Mali 12017 T 24 24
175 Mali 12018 T 24 24
176 Mali 12019 G 24 24
177 Mali 12020 C 24 24
178 Mali 12021 T 24 24
179 Mali 12022 T 24 24
180 Mali 12023 T 24 24
181 Mali 12024 C 24 24
182 Mali 12025 C 24 24
183 Mali 12026 A 24 24
184 Mali 12027 T 24 24
185 Mali 12028 G 24 24
186 Mali 12029 C 24 24
187 Mali 12030 A 24 24
188 Mali 12031 G 24 24
189 Mali 12032 G 24 24
190 Mali 12033 G 24 24
191 Mali 12034 T 24 24
192 Mali 12035 G 24 24
193 Mali 12036 C 24 24
194 Mali 12037 T 24 24
195 Mali 12038 G 24 24
196 Mali 12039 T 24 24
197 Mali 12040 A 24 24
198 Mali 12041 G 24 24
199 Mali 12042 A 24 24
200 Mali 12043 C 24 24
201 Mali 12044 A 24 24
202 Mali 12045 T 24 24
203 Mali 12046 A 24 24
204 Mali 12047 A 24 24
205 Mali 12048 A 24 24
206 Mali 12049 C 24 24
207 Mali 12050 A 24 24
208 Mali 12051 A 24 24
209 Mali 12052 G A 24 23 Lys3929Lys
210 Mali 12053 C 24 24
211 Mali 12054 T 24 24
212 Mali 12055 T 24 24
213 Mali 12056 T 24 24
214 Mali 12057 G 24 24
215 Mali 12058 T 24 24
216 Mali 12059 G 24 24
217 Mali 12060 A 24 24
218 Mali 12061 A 24 24
219 Mali 12062 G 24 24
220 Mali 12063 A 24 24
221 Mali 12064 A 24 24
222 Mali 12065 A 24 24
223 Mali 12066 T 24 24
224 Mali 12067 G 24 24
225 Mali 12068 C 24 24
226 Mali 12069 T 24 24
227 Mali 12070 G 24 24
228 Mali 12071 G 24 24
229 Mali 12072 A 24 24
230 Mali 12073 C 24 24
231 Mali 12074 A 24 24
232 Mali 12075 A 24 24
233 Mali 12076 C 24 24
234 Mali 12077 A 24 24
235 Mali 12078 G 24 24
236 Mali 12079 G 24 24
237 Mali 12080 G 24 24
238 Mali 12081 C 24 24
239 Mali 12082 A 24 24
240 Mali 12083 A 24 24
241 Mali 12084 C 24 24
242 Mali 12085 C 24 24
243 Mali 12086 T 24 24
244 Mali 12087 T 24 24
245 Mali 12088 A 24 24
246 Mali 12089 C 24 24
247 Mali 12090 A 24 24
248 Mali 12091 A 24 24