National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                       1            
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Lithuania 11843 T 234 234
1 Lithuania 11844 C 234 234
2 Lithuania 11845 T 234 234
3 Lithuania 11846 A 234 234
4 Lithuania 11847 A 234 234
5 Lithuania 11848 A 234 234
6 Lithuania 11849 A 234 234
7 Lithuania 11850 T 234 234
8 Lithuania 11851 G 234 234
9 Lithuania 11852 T 234 234
10 Lithuania 11853 C 234 234
11 Lithuania 11854 A 234 234
12 Lithuania 11855 G 234 234
13 Lithuania 11856 A 234 234
14 Lithuania 11857 T 234 234
15 Lithuania 11858 G 234 234
16 Lithuania 11859 T 234 234
17 Lithuania 11860 A 234 234
18 Lithuania 11861 A 234 234
19 Lithuania 11862 A 234 234
20 Lithuania 11863 G 234 234
21 Lithuania 11864 T 234 234
22 Lithuania 11865 G 234 234
23 Lithuania 11866 C 234 234
24 Lithuania 11867 A 234 234
25 Lithuania 11868 C 234 234
26 Lithuania 11869 A 234 234
27 Lithuania 11870 T 234 234
28 Lithuania 11871 C 234 234
29 Lithuania 11872 A 234 234
30 Lithuania 11873 G 234 234
31 Lithuania 11874 T 234 234
32 Lithuania 11875 A 234 234
33 Lithuania 11876 G 234 234
34 Lithuania 11877 T 234 234
35 Lithuania 11878 C 234 234
36 Lithuania 11879 T 234 234
37 Lithuania 11880 T 234 234
38 Lithuania 11881 A 234 234
39 Lithuania 11882 C 234 234
40 Lithuania 11883 T 234 234
41 Lithuania 11884 C 234 234
42 Lithuania 11885 T 234 234
43 Lithuania 11886 C 234 234
44 Lithuania 11887 A 234 234
45 Lithuania 11888 G 234 234
46 Lithuania 11889 T 234 234
47 Lithuania 11890 T 234 234
48 Lithuania 11891 T 234 234
49 Lithuania 11892 T 234 234
50 Lithuania 11893 G 234 234
51 Lithuania 11894 C 234 234
52 Lithuania 11895 A 234 234
53 Lithuania 11896 A 234 234
54 Lithuania 11897 C 234 234
55 Lithuania 11898 A 234 234
56 Lithuania 11899 A 234 234
57 Lithuania 11900 C 234 234
58 Lithuania 11901 T 234 234
59 Lithuania 11902 C 234 234
60 Lithuania 11903 A 234 234
61 Lithuania 11904 G 234 234
62 Lithuania 11905 A 234 234
63 Lithuania 11906 G 234 234
64 Lithuania 11907 T 234 234
65 Lithuania 11908 A 234 234
66 Lithuania 11909 G 234 234
67 Lithuania 11910 A 234 234
68 Lithuania 11911 A 234 234
69 Lithuania 11912 T 234 234
70 Lithuania 11913 C 234 234
71 Lithuania 11914 A 234 234
72 Lithuania 11915 T 234 234
73 Lithuania 11916 C 234 234
74 Lithuania 11917 A 234 234
75 Lithuania 11918 T 234 234
76 Lithuania 11919 C 234 234
77 Lithuania 11920 T 234 234
78 Lithuania 11921 A 234 234
79 Lithuania 11922 A 234 234
80 Lithuania 11923 A 234 234
81 Lithuania 11924 T 234 234
82 Lithuania 11925 T 234 234
83 Lithuania 11926 G 234 234
84 Lithuania 11927 T 234 234
85 Lithuania 11928 G 234 234
86 Lithuania 11929 G 234 234
87 Lithuania 11930 G 234 234
88 Lithuania 11931 C 234 234
89 Lithuania 11932 T 234 234
90 Lithuania 11933 C 234 234
91 Lithuania 11934 A 234 234
92 Lithuania 11935 A 234 234
93 Lithuania 11936 T 234 234
94 Lithuania 11937 G 234 234
95 Lithuania 11938 T 234 234
96 Lithuania 11939 G 234 234
97 Lithuania 11940 T 234 234
98 Lithuania 11941 C 234 234
99 Lithuania 11942 C 234 234
100 Lithuania 11943 A 234 234
101 Lithuania 11944 G 234 234
102 Lithuania 11945 T 234 234
103 Lithuania 11946 T 234 234
104 Lithuania 11947 A 234 234
105 Lithuania 11948 C 234 234
106 Lithuania 11949 A 234 234
107 Lithuania 11950 C 234 234
108 Lithuania 11951 A 234 234
109 Lithuania 11952 A 235 235
110 Lithuania 11953 T 235 235
111 Lithuania 11954 G 235 235
112 Lithuania 11955 A 235 235
113 Lithuania 11956 C 235 235
114 Lithuania 11957 A 235 235
115 Lithuania 11958 T 235 235
116 Lithuania 11959 T 234 234
117 Lithuania 11960 C 234 234
118 Lithuania 11961 T 234 234
119 Lithuania 11962 C 234 234
120 Lithuania 11963 T 234 234
121 Lithuania 11964 T 234 234
122 Lithuania 11965 A 234 234
123 Lithuania 11966 G 234 234
124 Lithuania 11967 C 234 234
125 Lithuania 11968 T 234 234
126 Lithuania 11969 A 234 234
127 Lithuania 11970 A 234 234
128 Lithuania 11971 A 234 234
129 Lithuania 11972 G 234 234
130 Lithuania 11973 A 234 234
131 Lithuania 11974 T 234 234
132 Lithuania 11975 A 234 234
133 Lithuania 11976 C 234 234
134 Lithuania 11977 T 234 234
135 Lithuania 11978 A 234 234
136 Lithuania 11979 C 234 234
137 Lithuania 11980 T 234 234
138 Lithuania 11981 G 234 234
139 Lithuania 11982 A 234 234
140 Lithuania 11983 A 234 234
141 Lithuania 11984 G 234 234
142 Lithuania 11985 C 234 234
143 Lithuania 11986 C 234 234
144 Lithuania 11987 T 234 234
145 Lithuania 11988 T 234 234
146 Lithuania 11989 T 234 234
147 Lithuania 11990 G 234 234
148 Lithuania 11991 A 234 234
149 Lithuania 11992 A 234 234
150 Lithuania 11993 A 234 234
151 Lithuania 11994 A 234 234
152 Lithuania 11995 A 234 234
153 Lithuania 11996 A 234 234
154 Lithuania 11997 T 234 234
155 Lithuania 11998 G 234 234
156 Lithuania 11999 G 234 234
157 Lithuania 12000 T 234 234
158 Lithuania 12001 T 234 234
159 Lithuania 12002 T 234 234
160 Lithuania 12003 C 234 234
161 Lithuania 12004 A 234 234
162 Lithuania 12005 C 234 234
163 Lithuania 12006 T 234 234
164 Lithuania 12007 A 234 234
165 Lithuania 12008 C 234 234
166 Lithuania 12009 T 234 234
167 Lithuania 12010 T 234 234
168 Lithuania 12011 T 234 234
169 Lithuania 12012 C 234 234
170 Lithuania 12013 T 234 234
171 Lithuania 12014 G 234 234
172 Lithuania 12015 T 234 234
173 Lithuania 12016 T 234 234
174 Lithuania 12017 T 234 234
175 Lithuania 12018 T 234 234
176 Lithuania 12019 G 234 234
177 Lithuania 12020 C 234 234
178 Lithuania 12021 T 234 234
179 Lithuania 12022 T 234 234
180 Lithuania 12023 T 234 234
181 Lithuania 12024 C 234 234
182 Lithuania 12025 C 234 234
183 Lithuania 12026 A 234 234
184 Lithuania 12027 T 234 234
185 Lithuania 12028 G 234 234
186 Lithuania 12029 C 234 234
187 Lithuania 12030 A 234 234
188 Lithuania 12031 G 234 234
189 Lithuania 12032 G 234 234
190 Lithuania 12033 G 234 234
191 Lithuania 12034 T 234 234
192 Lithuania 12035 G 234 234
193 Lithuania 12036 C 234 234
194 Lithuania 12037 T 234 234
195 Lithuania 12038 G 234 234
196 Lithuania 12039 T 234 234
197 Lithuania 12040 A 234 234
198 Lithuania 12041 G 234 234
199 Lithuania 12042 A 234 234
200 Lithuania 12043 C 234 234
201 Lithuania 12044 A 234 234
202 Lithuania 12045 T 234 234
203 Lithuania 12046 A 234 234
204 Lithuania 12047 A 234 234
205 Lithuania 12048 A 234 234
206 Lithuania 12049 C 234 234
207 Lithuania 12050 A 234 234
208 Lithuania 12051 A 234 234
209 Lithuania 12052 G 234 234
210 Lithuania 12053 C 234 234
211 Lithuania 12054 T 234 234
212 Lithuania 12055 T 234 234
213 Lithuania 12056 T 234 234
214 Lithuania 12057 G 234 234
215 Lithuania 12058 T 234 234
216 Lithuania 12059 G 234 234
217 Lithuania 12060 A 234 234
218 Lithuania 12061 A 234 234
219 Lithuania 12062 G 234 234
220 Lithuania 12063 A 234 234
221 Lithuania 12064 A 234 234
222 Lithuania 12065 A 234 234
223 Lithuania 12066 T 234 234
224 Lithuania 12067 G 234 234
225 Lithuania 12068 C 234 234
226 Lithuania 12069 T 234 234
227 Lithuania 12070 G 234 234
228 Lithuania 12071 G 234 234
229 Lithuania 12072 A 234 234
230 Lithuania 12073 C 234 234
231 Lithuania 12074 A 234 234
232 Lithuania 12075 A 234 234
233 Lithuania 12076 C T 234 233 Asn3937Asn
234 Lithuania 12077 A 234 234
235 Lithuania 12078 G 234 234
236 Lithuania 12079 G 234 234
237 Lithuania 12080 G 234 234
238 Lithuania 12081 C 234 234
239 Lithuania 12082 A 234 234
240 Lithuania 12083 A 234 234
241 Lithuania 12084 C 234 234
242 Lithuania 12085 C 234 234
243 Lithuania 12086 T 234 234
244 Lithuania 12087 T 234 234
245 Lithuania 12088 A 234 234
246 Lithuania 12089 C 234 234
247 Lithuania 12090 A 234 234
248 Lithuania 12091 A 234 234