National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Lebanon 11843 T 19 19
1 Lebanon 11844 C 19 19
2 Lebanon 11845 T 19 19
3 Lebanon 11846 A 19 19
4 Lebanon 11847 A 19 19
5 Lebanon 11848 A 19 19
6 Lebanon 11849 A 19 19
7 Lebanon 11850 T 19 19
8 Lebanon 11851 G 19 19
9 Lebanon 11852 T 19 19
10 Lebanon 11853 C 19 19
11 Lebanon 11854 A 19 19
12 Lebanon 11855 G 19 19
13 Lebanon 11856 A 19 19
14 Lebanon 11857 T 19 19
15 Lebanon 11858 G 19 19
16 Lebanon 11859 T 19 19
17 Lebanon 11860 A 19 19
18 Lebanon 11861 A 19 19
19 Lebanon 11862 A 19 19
20 Lebanon 11863 G 19 19
21 Lebanon 11864 T 19 19
22 Lebanon 11865 G 19 19
23 Lebanon 11866 C 19 19
24 Lebanon 11867 A 19 19
25 Lebanon 11868 C 19 19
26 Lebanon 11869 A 19 19
27 Lebanon 11870 T 19 19
28 Lebanon 11871 C 19 19
29 Lebanon 11872 A 19 19
30 Lebanon 11873 G 19 19
31 Lebanon 11874 T 19 19
32 Lebanon 11875 A 19 19
33 Lebanon 11876 G 19 19
34 Lebanon 11877 T 19 19
35 Lebanon 11878 C 19 19
36 Lebanon 11879 T 19 19
37 Lebanon 11880 T 19 19
38 Lebanon 11881 A 19 19
39 Lebanon 11882 C 19 19
40 Lebanon 11883 T 19 19
41 Lebanon 11884 C 19 19
42 Lebanon 11885 T 19 19
43 Lebanon 11886 C 19 19
44 Lebanon 11887 A 19 19
45 Lebanon 11888 G 19 19
46 Lebanon 11889 T 19 19
47 Lebanon 11890 T 23 23
48 Lebanon 11891 T 23 23
49 Lebanon 11892 T 23 23
50 Lebanon 11893 G 23 23
51 Lebanon 11894 C 23 23
52 Lebanon 11895 A 23 23
53 Lebanon 11896 A 23 23
54 Lebanon 11897 C 23 23
55 Lebanon 11898 A 23 23
56 Lebanon 11899 A 23 23
57 Lebanon 11900 C 23 23
58 Lebanon 11901 T 23 23
59 Lebanon 11902 C 23 23
60 Lebanon 11903 A 23 23
61 Lebanon 11904 G 23 23
62 Lebanon 11905 A 23 23
63 Lebanon 11906 G 23 23
64 Lebanon 11907 T 23 23
65 Lebanon 11908 A 23 23
66 Lebanon 11909 G 23 23
67 Lebanon 11910 A 23 23
68 Lebanon 11911 A 23 23
69 Lebanon 11912 T 23 23
70 Lebanon 11913 C 23 23
71 Lebanon 11914 A 23 23
72 Lebanon 11915 T 23 23
73 Lebanon 11916 C 23 23
74 Lebanon 11917 A 23 23
75 Lebanon 11918 T 23 23
76 Lebanon 11919 C 23 23
77 Lebanon 11920 T 23 23
78 Lebanon 11921 A 23 23
79 Lebanon 11922 A 23 23
80 Lebanon 11923 A 23 23
81 Lebanon 11924 T 23 23
82 Lebanon 11925 T 23 23
83 Lebanon 11926 G 23 23
84 Lebanon 11927 T 23 23
85 Lebanon 11928 G 23 23
86 Lebanon 11929 G 23 23
87 Lebanon 11930 G 23 23
88 Lebanon 11931 C 23 23
89 Lebanon 11932 T 23 23
90 Lebanon 11933 C 23 23
91 Lebanon 11934 A 23 23
92 Lebanon 11935 A 23 23
93 Lebanon 11936 T 23 23
94 Lebanon 11937 G 23 23
95 Lebanon 11938 T 23 23
96 Lebanon 11939 G 23 23
97 Lebanon 11940 T 23 23
98 Lebanon 11941 C 23 23
99 Lebanon 11942 C 23 23
100 Lebanon 11943 A 23 23
101 Lebanon 11944 G 23 23
102 Lebanon 11945 T 23 23
103 Lebanon 11946 T 23 23
104 Lebanon 11947 A 23 23
105 Lebanon 11948 C 23 23
106 Lebanon 11949 A 23 23
107 Lebanon 11950 C 23 23
108 Lebanon 11951 A 23 23
109 Lebanon 11952 A 23 23
110 Lebanon 11953 T 23 23
111 Lebanon 11954 G 23 23
112 Lebanon 11955 A 23 23
113 Lebanon 11956 C 23 23
114 Lebanon 11957 A 23 23
115 Lebanon 11958 T 23 23
116 Lebanon 11959 T 23 23
117 Lebanon 11960 C 23 23
118 Lebanon 11961 T 23 23
119 Lebanon 11962 C 23 23
120 Lebanon 11963 T 23 23
121 Lebanon 11964 T 23 23
122 Lebanon 11965 A 23 23
123 Lebanon 11966 G 23 23
124 Lebanon 11967 C 23 23
125 Lebanon 11968 T 23 23
126 Lebanon 11969 A 23 23
127 Lebanon 11970 A 23 23
128 Lebanon 11971 A 23 23
129 Lebanon 11972 G 23 23
130 Lebanon 11973 A 23 23
131 Lebanon 11974 T 23 23
132 Lebanon 11975 A 23 23
133 Lebanon 11976 C 23 23
134 Lebanon 11977 T 23 23
135 Lebanon 11978 A 23 23
136 Lebanon 11979 C 23 23
137 Lebanon 11980 T 23 23
138 Lebanon 11981 G 23 23
139 Lebanon 11982 A 23 23
140 Lebanon 11983 A 23 23
141 Lebanon 11984 G 23 23
142 Lebanon 11985 C 23 23
143 Lebanon 11986 C 23 23
144 Lebanon 11987 T 23 23
145 Lebanon 11988 T 23 23
146 Lebanon 11989 T 23 23
147 Lebanon 11990 G 23 23
148 Lebanon 11991 A 23 23
149 Lebanon 11992 A 23 23
150 Lebanon 11993 A 23 23
151 Lebanon 11994 A 23 23
152 Lebanon 11995 A 23 23
153 Lebanon 11996 A 23 23
154 Lebanon 11997 T 23 23
155 Lebanon 11998 G 23 23
156 Lebanon 11999 G 23 23
157 Lebanon 12000 T 23 23
158 Lebanon 12001 T 23 23
159 Lebanon 12002 T 23 23
160 Lebanon 12003 C 23 23
161 Lebanon 12004 A 23 23
162 Lebanon 12005 C 23 23
163 Lebanon 12006 T 23 23
164 Lebanon 12007 A 23 23
165 Lebanon 12008 C 23 23
166 Lebanon 12009 T 23 23
167 Lebanon 12010 T 23 23
168 Lebanon 12011 T 23 23
169 Lebanon 12012 C 23 23
170 Lebanon 12013 T 23 23
171 Lebanon 12014 G 23 23
172 Lebanon 12015 T 23 23
173 Lebanon 12016 T 23 23
174 Lebanon 12017 T 23 23
175 Lebanon 12018 T 23 23
176 Lebanon 12019 G 23 23
177 Lebanon 12020 C 23 23
178 Lebanon 12021 T 23 23
179 Lebanon 12022 T 23 23
180 Lebanon 12023 T 23 23
181 Lebanon 12024 C 23 23
182 Lebanon 12025 C 23 23
183 Lebanon 12026 A 23 23
184 Lebanon 12027 T 23 23
185 Lebanon 12028 G 23 23
186 Lebanon 12029 C 23 23
187 Lebanon 12030 A 23 23
188 Lebanon 12031 G 23 23
189 Lebanon 12032 G 23 23
190 Lebanon 12033 G 23 23
191 Lebanon 12034 T 23 23
192 Lebanon 12035 G 23 23
193 Lebanon 12036 C 23 23
194 Lebanon 12037 T 23 23
195 Lebanon 12038 G 23 23
196 Lebanon 12039 T 23 23
197 Lebanon 12040 A 23 23
198 Lebanon 12041 G 23 23
199 Lebanon 12042 A 23 23
200 Lebanon 12043 C 23 23
201 Lebanon 12044 A 23 23
202 Lebanon 12045 T 23 23
203 Lebanon 12046 A 23 23
204 Lebanon 12047 A 23 23
205 Lebanon 12048 A 23 23
206 Lebanon 12049 C 23 23
207 Lebanon 12050 A 23 23
208 Lebanon 12051 A 23 23
209 Lebanon 12052 G 23 23
210 Lebanon 12053 C 23 23
211 Lebanon 12054 T 23 23
212 Lebanon 12055 T 23 23
213 Lebanon 12056 T 23 23
214 Lebanon 12057 G 23 23
215 Lebanon 12058 T 23 23
216 Lebanon 12059 G 23 23
217 Lebanon 12060 A 23 23
218 Lebanon 12061 A 23 23
219 Lebanon 12062 G 23 23
220 Lebanon 12063 A 23 23
221 Lebanon 12064 A 23 23
222 Lebanon 12065 A 23 23
223 Lebanon 12066 T 23 23
224 Lebanon 12067 G 23 23
225 Lebanon 12068 C 23 23
226 Lebanon 12069 T 23 23
227 Lebanon 12070 G 23 23
228 Lebanon 12071 G 23 23
229 Lebanon 12072 A 23 23
230 Lebanon 12073 C 23 23
231 Lebanon 12074 A 23 23
232 Lebanon 12075 A 23 23
233 Lebanon 12076 C 23 23
234 Lebanon 12077 A 23 23
235 Lebanon 12078 G 23 23
236 Lebanon 12079 G 23 23
237 Lebanon 12080 G 23 23
238 Lebanon 12081 C 23 23
239 Lebanon 12082 A 23 23
240 Lebanon 12083 A 23 23
241 Lebanon 12084 C 23 23
242 Lebanon 12085 C 23 23
243 Lebanon 12086 T 23 23
244 Lebanon 12087 T 23 23
245 Lebanon 12088 A 23 23
246 Lebanon 12089 C 23 23
247 Lebanon 12090 A 23 23
248 Lebanon 12091 A 23 23