National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15     1                              
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                       1            
L   45                                    
M   12                                    
N   9                                    
Q   18                         1          
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Latvia 11843 T 233 233
1 Latvia 11844 C 233 233
2 Latvia 11845 T 233 233
3 Latvia 11846 A 233 233
4 Latvia 11847 A 233 233
5 Latvia 11848 A 233 233
6 Latvia 11849 A 233 233
7 Latvia 11850 T 233 233
8 Latvia 11851 G 233 233
9 Latvia 11852 T 233 233
10 Latvia 11853 C 233 233
11 Latvia 11854 A 233 233
12 Latvia 11855 G 233 233
13 Latvia 11856 A 233 233
14 Latvia 11857 T 233 233
15 Latvia 11858 G 233 233
16 Latvia 11859 T 233 233
17 Latvia 11860 A 233 233
18 Latvia 11861 A 233 233
19 Latvia 11862 A 233 233
20 Latvia 11863 G 233 233
21 Latvia 11864 T 233 233
22 Latvia 11865 G 233 233
23 Latvia 11866 C 233 233
24 Latvia 11867 A 233 233
25 Latvia 11868 C 233 233
26 Latvia 11869 A 233 233
27 Latvia 11870 T 233 233
28 Latvia 11871 C 233 233
29 Latvia 11872 A 233 233
30 Latvia 11873 G 233 233
31 Latvia 11874 T 233 233
32 Latvia 11875 A 233 233
33 Latvia 11876 G 233 233
34 Latvia 11877 T 233 233
35 Latvia 11878 C 233 233
36 Latvia 11879 T 233 233
37 Latvia 11880 T 233 233
38 Latvia 11881 A 233 233
39 Latvia 11882 C 233 233
40 Latvia 11883 T 233 233
41 Latvia 11884 C 233 233
42 Latvia 11885 T 233 233
43 Latvia 11886 C 233 233
44 Latvia 11887 A 233 233
45 Latvia 11888 G 233 233
46 Latvia 11889 T 233 233
47 Latvia 11890 T 233 233
48 Latvia 11891 T 233 233
49 Latvia 11892 T 233 233
50 Latvia 11893 G 233 233
51 Latvia 11894 C 233 233
52 Latvia 11895 A 233 233
53 Latvia 11896 A 233 233
54 Latvia 11897 C 233 233
55 Latvia 11898 A 233 233
56 Latvia 11899 A 233 233
57 Latvia 11900 C 233 233
58 Latvia 11901 T 233 233
59 Latvia 11902 C 233 233
60 Latvia 11903 A 233 233
61 Latvia 11904 G 233 233
62 Latvia 11905 A 233 233
63 Latvia 11906 G 233 233
64 Latvia 11907 T 233 233
65 Latvia 11908 A 233 233
66 Latvia 11909 G 233 233
67 Latvia 11910 A 233 233
68 Latvia 11911 A 233 233
69 Latvia 11912 T 233 233
70 Latvia 11913 C 233 233
71 Latvia 11914 A 233 233
72 Latvia 11915 T 233 233
73 Latvia 11916 C 233 233
74 Latvia 11917 A 233 233
75 Latvia 11918 T 233 233
76 Latvia 11919 C 233 233
77 Latvia 11920 T 233 233
78 Latvia 11921 A 233 233
79 Latvia 11922 A 233 233
80 Latvia 11923 A 233 233
81 Latvia 11924 T 233 233
82 Latvia 11925 T 233 233
83 Latvia 11926 G 233 233
84 Latvia 11927 T 233 233
85 Latvia 11928 G 233 233
86 Latvia 11929 G 233 233
87 Latvia 11930 G 233 233
88 Latvia 11931 C 233 233
89 Latvia 11932 T 233 233
90 Latvia 11933 C 233 233
91 Latvia 11934 A 233 233
92 Latvia 11935 A 233 233
93 Latvia 11936 T 233 233
94 Latvia 11937 G 233 233
95 Latvia 11938 T 233 233
96 Latvia 11939 G 233 233
97 Latvia 11940 T 233 233
98 Latvia 11941 C 233 233
99 Latvia 11942 C 233 233
100 Latvia 11943 A 233 233
101 Latvia 11944 G 233 233
102 Latvia 11945 T 233 233
103 Latvia 11946 T 233 233
104 Latvia 11947 A 233 233
105 Latvia 11948 C 233 233
106 Latvia 11949 A 233 233
107 Latvia 11950 C 233 233
108 Latvia 11951 A 233 233
109 Latvia 11952 A 233 233
110 Latvia 11953 T 233 233
111 Latvia 11954 G 233 233
112 Latvia 11955 A 233 233
113 Latvia 11956 C 233 233
114 Latvia 11957 A 233 233
115 Latvia 11958 T 233 233
116 Latvia 11959 T 233 233
117 Latvia 11960 C 233 233
118 Latvia 11961 T 233 233
119 Latvia 11962 C 233 233
120 Latvia 11963 T 233 233
121 Latvia 11964 T 233 233
122 Latvia 11965 A 233 233
123 Latvia 11966 G 233 233
124 Latvia 11967 C 233 233
125 Latvia 11968 T 233 233
126 Latvia 11969 A 233 233
127 Latvia 11970 A 233 233
128 Latvia 11971 A 233 233
129 Latvia 11972 G 233 233
130 Latvia 11973 A 233 233
131 Latvia 11974 T 233 233
132 Latvia 11975 A 233 233
133 Latvia 11976 C 233 233
134 Latvia 11977 T 233 233
135 Latvia 11978 A 233 233
136 Latvia 11979 C 233 233
137 Latvia 11980 T 233 233
138 Latvia 11981 G 233 233
139 Latvia 11982 A 233 233
140 Latvia 11983 A 233 233
141 Latvia 11984 G 233 233
142 Latvia 11985 C 233 233
143 Latvia 11986 C 233 233
144 Latvia 11987 T 233 233
145 Latvia 11988 T 233 233
146 Latvia 11989 T 233 233
147 Latvia 11990 G 233 233
148 Latvia 11991 A 233 233
149 Latvia 11992 A 233 233
150 Latvia 11993 A 233 233
151 Latvia 11994 A 233 233
152 Latvia 11995 A 233 233
153 Latvia 11996 A 233 233
154 Latvia 11997 T 233 233
155 Latvia 11998 G 233 233
156 Latvia 11999 G 233 233
157 Latvia 12000 T 233 233
158 Latvia 12001 T 233 233
159 Latvia 12002 T 233 233
160 Latvia 12003 C 233 233
161 Latvia 12004 A 233 233
162 Latvia 12005 C 233 233
163 Latvia 12006 T 233 233
164 Latvia 12007 A 233 233
165 Latvia 12008 C 233 233
166 Latvia 12009 T 233 233
167 Latvia 12010 T 233 233
168 Latvia 12011 T 233 233
169 Latvia 12012 C 233 233
170 Latvia 12013 T 233 233
171 Latvia 12014 G 233 233
172 Latvia 12015 T 233 233
173 Latvia 12016 T 233 233
174 Latvia 12017 T 233 233
175 Latvia 12018 T 233 233
176 Latvia 12019 G 233 233
177 Latvia 12020 C 233 233
178 Latvia 12021 T 233 233
179 Latvia 12022 T 233 233
180 Latvia 12023 T 233 233
181 Latvia 12024 C 233 233
182 Latvia 12025 C 233 233
183 Latvia 12026 A 233 233
184 Latvia 12027 T 233 233
185 Latvia 12028 G 233 233
186 Latvia 12029 C 233 233
187 Latvia 12030 A 233 233
188 Latvia 12031 G A 233 229 Gln3922Gln
189 Latvia 12032 G 233 233
190 Latvia 12033 G 233 233
191 Latvia 12034 T 233 233
192 Latvia 12035 G 233 233
193 Latvia 12036 C 233 233
194 Latvia 12037 T 233 233
195 Latvia 12038 G 233 233
196 Latvia 12039 T 233 233
197 Latvia 12040 A 233 233
198 Latvia 12041 G 233 233
199 Latvia 12042 A 233 233
200 Latvia 12043 C T 233 232 Asp3926Asp
201 Latvia 12044 A 233 233
202 Latvia 12045 T 233 233
203 Latvia 12046 A 233 233
204 Latvia 12047 A 233 233
205 Latvia 12048 A 233 233
206 Latvia 12049 C 233 233
207 Latvia 12050 A 233 233
208 Latvia 12051 A 233 233
209 Latvia 12052 G T 233 232 Lys3929Asn
210 Latvia 12053 C 233 233
211 Latvia 12054 T 233 233
212 Latvia 12055 T 233 233
213 Latvia 12056 T 233 233
214 Latvia 12057 G 233 233
215 Latvia 12058 T 233 233
216 Latvia 12059 G 233 233
217 Latvia 12060 A 233 233
218 Latvia 12061 A 233 233
219 Latvia 12062 G 233 233
220 Latvia 12063 A 233 233
221 Latvia 12064 A 233 233
222 Latvia 12065 A 233 233
223 Latvia 12066 T 233 233
224 Latvia 12067 G 233 233
225 Latvia 12068 C 233 233
226 Latvia 12069 T 233 233
227 Latvia 12070 G 233 233
228 Latvia 12071 G 233 233
229 Latvia 12072 A 233 233
230 Latvia 12073 C 233 233
231 Latvia 12074 A 233 233
232 Latvia 12075 A 233 233
233 Latvia 12076 C 233 233
234 Latvia 12077 A 233 233
235 Latvia 12078 G 233 233
236 Latvia 12079 G 233 233
237 Latvia 12080 G 233 233
238 Latvia 12081 C 233 233
239 Latvia 12082 A 233 233
240 Latvia 12083 A 233 233
241 Latvia 12084 C 233 233
242 Latvia 12085 C 233 233
243 Latvia 12086 T 233 233
244 Latvia 12087 T 233 233
245 Latvia 12088 A 233 233
246 Latvia 12089 C 233 233
247 Latvia 12090 A 233 233
248 Latvia 12091 A 233 233