National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Kuwait 11843 T 8 8
1 Kuwait 11844 C 8 8
2 Kuwait 11845 T 8 8
3 Kuwait 11846 A 8 8
4 Kuwait 11847 A 8 8
5 Kuwait 11848 A 8 8
6 Kuwait 11849 A 8 8
7 Kuwait 11850 T 8 8
8 Kuwait 11851 G 8 8
9 Kuwait 11852 T 8 8
10 Kuwait 11853 C 8 8
11 Kuwait 11854 A 8 8
12 Kuwait 11855 G 8 8
13 Kuwait 11856 A 8 8
14 Kuwait 11857 T 8 8
15 Kuwait 11858 G 8 8
16 Kuwait 11859 T 8 8
17 Kuwait 11860 A 8 8
18 Kuwait 11861 A 8 8
19 Kuwait 11862 A 8 8
20 Kuwait 11863 G 8 8
21 Kuwait 11864 T 8 8
22 Kuwait 11865 G 8 8
23 Kuwait 11866 C 8 8
24 Kuwait 11867 A 8 8
25 Kuwait 11868 C 8 8
26 Kuwait 11869 A 8 8
27 Kuwait 11870 T 8 8
28 Kuwait 11871 C 8 8
29 Kuwait 11872 A 8 8
30 Kuwait 11873 G 8 8
31 Kuwait 11874 T 8 8
32 Kuwait 11875 A 8 8
33 Kuwait 11876 G 8 8
34 Kuwait 11877 T 8 8
35 Kuwait 11878 C 8 8
36 Kuwait 11879 T 8 8
37 Kuwait 11880 T 8 8
38 Kuwait 11881 A 8 8
39 Kuwait 11882 C 8 8
40 Kuwait 11883 T 8 8
41 Kuwait 11884 C 8 8
42 Kuwait 11885 T 8 8
43 Kuwait 11886 C 8 8
44 Kuwait 11887 A 8 8
45 Kuwait 11888 G 8 8
46 Kuwait 11889 T 8 8
47 Kuwait 11890 T 8 8
48 Kuwait 11891 T 8 8
49 Kuwait 11892 T 8 8
50 Kuwait 11893 G 8 8
51 Kuwait 11894 C 8 8
52 Kuwait 11895 A 8 8
53 Kuwait 11896 A 8 8
54 Kuwait 11897 C 8 8
55 Kuwait 11898 A 8 8
56 Kuwait 11899 A 8 8
57 Kuwait 11900 C 8 8
58 Kuwait 11901 T 8 8
59 Kuwait 11902 C 8 8
60 Kuwait 11903 A 8 8
61 Kuwait 11904 G 8 8
62 Kuwait 11905 A 8 8
63 Kuwait 11906 G 8 8
64 Kuwait 11907 T 8 8
65 Kuwait 11908 A 8 8
66 Kuwait 11909 G 8 8
67 Kuwait 11910 A 8 8
68 Kuwait 11911 A 8 8
69 Kuwait 11912 T 8 8
70 Kuwait 11913 C 8 8
71 Kuwait 11914 A 8 8
72 Kuwait 11915 T 8 8
73 Kuwait 11916 C 8 8
74 Kuwait 11917 A 8 8
75 Kuwait 11918 T 8 8
76 Kuwait 11919 C 8 8
77 Kuwait 11920 T 8 8
78 Kuwait 11921 A 8 8
79 Kuwait 11922 A 8 8
80 Kuwait 11923 A 8 8
81 Kuwait 11924 T 8 8
82 Kuwait 11925 T 8 8
83 Kuwait 11926 G 8 8
84 Kuwait 11927 T 8 8
85 Kuwait 11928 G 8 8
86 Kuwait 11929 G 8 8
87 Kuwait 11930 G 8 8
88 Kuwait 11931 C 8 8
89 Kuwait 11932 T 8 8
90 Kuwait 11933 C 8 8
91 Kuwait 11934 A 8 8
92 Kuwait 11935 A 8 8
93 Kuwait 11936 T 8 8
94 Kuwait 11937 G 8 8
95 Kuwait 11938 T 8 8
96 Kuwait 11939 G 8 8
97 Kuwait 11940 T 8 8
98 Kuwait 11941 C 8 8
99 Kuwait 11942 C 8 8
100 Kuwait 11943 A 8 8
101 Kuwait 11944 G 8 8
102 Kuwait 11945 T 8 8
103 Kuwait 11946 T 8 8
104 Kuwait 11947 A 8 8
105 Kuwait 11948 C 8 8
106 Kuwait 11949 A 8 8
107 Kuwait 11950 C 8 8
108 Kuwait 11951 A 8 8
109 Kuwait 11952 A 8 8
110 Kuwait 11953 T 8 8
111 Kuwait 11954 G 8 8
112 Kuwait 11955 A 8 8
113 Kuwait 11956 C 8 8
114 Kuwait 11957 A 8 8
115 Kuwait 11958 T 8 8
116 Kuwait 11959 T 8 8
117 Kuwait 11960 C 8 8
118 Kuwait 11961 T 8 8
119 Kuwait 11962 C 8 8
120 Kuwait 11963 T 8 8
121 Kuwait 11964 T 8 8
122 Kuwait 11965 A 8 8
123 Kuwait 11966 G 8 8
124 Kuwait 11967 C 8 8
125 Kuwait 11968 T 8 8
126 Kuwait 11969 A 8 8
127 Kuwait 11970 A 8 8
128 Kuwait 11971 A 8 8
129 Kuwait 11972 G 8 8
130 Kuwait 11973 A 8 8
131 Kuwait 11974 T 8 8
132 Kuwait 11975 A 8 8
133 Kuwait 11976 C 8 8
134 Kuwait 11977 T 8 8
135 Kuwait 11978 A 8 8
136 Kuwait 11979 C 8 8
137 Kuwait 11980 T 8 8
138 Kuwait 11981 G 8 8
139 Kuwait 11982 A 8 8
140 Kuwait 11983 A 8 8
141 Kuwait 11984 G 8 8
142 Kuwait 11985 C 8 8
143 Kuwait 11986 C 8 8
144 Kuwait 11987 T 8 8
145 Kuwait 11988 T 8 8
146 Kuwait 11989 T 8 8
147 Kuwait 11990 G 8 8
148 Kuwait 11991 A 8 8
149 Kuwait 11992 A 8 8
150 Kuwait 11993 A 8 8
151 Kuwait 11994 A 8 8
152 Kuwait 11995 A 8 8
153 Kuwait 11996 A 8 8
154 Kuwait 11997 T 8 8
155 Kuwait 11998 G 8 8
156 Kuwait 11999 G 8 8
157 Kuwait 12000 T 8 8
158 Kuwait 12001 T 8 8
159 Kuwait 12002 T 8 8
160 Kuwait 12003 C 8 8
161 Kuwait 12004 A 8 8
162 Kuwait 12005 C 8 8
163 Kuwait 12006 T 8 8
164 Kuwait 12007 A 8 8
165 Kuwait 12008 C 8 8
166 Kuwait 12009 T 8 8
167 Kuwait 12010 T 8 8
168 Kuwait 12011 T 8 8
169 Kuwait 12012 C 8 8
170 Kuwait 12013 T 8 8
171 Kuwait 12014 G 8 8
172 Kuwait 12015 T 8 8
173 Kuwait 12016 T 8 8
174 Kuwait 12017 T 8 8
175 Kuwait 12018 T 8 8
176 Kuwait 12019 G 8 8
177 Kuwait 12020 C 8 8
178 Kuwait 12021 T 8 8
179 Kuwait 12022 T 8 8
180 Kuwait 12023 T 8 8
181 Kuwait 12024 C 8 8
182 Kuwait 12025 C 8 8
183 Kuwait 12026 A 8 8
184 Kuwait 12027 T 8 8
185 Kuwait 12028 G 8 8
186 Kuwait 12029 C 8 8
187 Kuwait 12030 A 8 8
188 Kuwait 12031 G 8 8
189 Kuwait 12032 G 8 8
190 Kuwait 12033 G 8 8
191 Kuwait 12034 T 8 8
192 Kuwait 12035 G 8 8
193 Kuwait 12036 C 8 8
194 Kuwait 12037 T 8 8
195 Kuwait 12038 G 8 8
196 Kuwait 12039 T 8 8
197 Kuwait 12040 A 8 8
198 Kuwait 12041 G 8 8
199 Kuwait 12042 A 8 8
200 Kuwait 12043 C 8 8
201 Kuwait 12044 A 8 8
202 Kuwait 12045 T 8 8
203 Kuwait 12046 A 8 8
204 Kuwait 12047 A 8 8
205 Kuwait 12048 A 8 8
206 Kuwait 12049 C 8 8
207 Kuwait 12050 A 8 8
208 Kuwait 12051 A 8 8
209 Kuwait 12052 G 8 8
210 Kuwait 12053 C 8 8
211 Kuwait 12054 T 8 8
212 Kuwait 12055 T 8 8
213 Kuwait 12056 T 8 8
214 Kuwait 12057 G 8 8
215 Kuwait 12058 T 8 8
216 Kuwait 12059 G 8 8
217 Kuwait 12060 A 8 8
218 Kuwait 12061 A 8 8
219 Kuwait 12062 G 8 8
220 Kuwait 12063 A 8 8
221 Kuwait 12064 A 8 8
222 Kuwait 12065 A 8 8
223 Kuwait 12066 T 8 8
224 Kuwait 12067 G 8 8
225 Kuwait 12068 C 8 8
226 Kuwait 12069 T 8 8
227 Kuwait 12070 G 8 8
228 Kuwait 12071 G 8 8
229 Kuwait 12072 A 8 8
230 Kuwait 12073 C 8 8
231 Kuwait 12074 A 8 8
232 Kuwait 12075 A 8 8
233 Kuwait 12076 C 8 8
234 Kuwait 12077 A 8 8
235 Kuwait 12078 G 8 8
236 Kuwait 12079 G 8 8
237 Kuwait 12080 G 8 8
238 Kuwait 12081 C 8 8
239 Kuwait 12082 A 8 8
240 Kuwait 12083 A 8 8
241 Kuwait 12084 C 8 8
242 Kuwait 12085 C 8 8
243 Kuwait 12086 T 8 8
244 Kuwait 12087 T 8 8
245 Kuwait 12088 A 8 8
246 Kuwait 12089 C 8 8
247 Kuwait 12090 A 8 8
248 Kuwait 12091 A 8 8