National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                   1                
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Kazakhstan 11843 T 53 53
1 Kazakhstan 11844 C 53 53
2 Kazakhstan 11845 T 53 53
3 Kazakhstan 11846 A 53 53
4 Kazakhstan 11847 A 53 53
5 Kazakhstan 11848 A 53 53
6 Kazakhstan 11849 A 53 53
7 Kazakhstan 11850 T 53 53
8 Kazakhstan 11851 G 53 53
9 Kazakhstan 11852 T 53 53
10 Kazakhstan 11853 C 53 53
11 Kazakhstan 11854 A 53 53
12 Kazakhstan 11855 G 53 53
13 Kazakhstan 11856 A 53 53
14 Kazakhstan 11857 T 53 53
15 Kazakhstan 11858 G 53 53
16 Kazakhstan 11859 T 53 53
17 Kazakhstan 11860 A 53 53
18 Kazakhstan 11861 A 53 53
19 Kazakhstan 11862 A 53 53
20 Kazakhstan 11863 G 53 53
21 Kazakhstan 11864 T 53 53
22 Kazakhstan 11865 G 53 53
23 Kazakhstan 11866 C 53 53
24 Kazakhstan 11867 A 53 53
25 Kazakhstan 11868 C 53 53
26 Kazakhstan 11869 A 53 53
27 Kazakhstan 11870 T 53 53
28 Kazakhstan 11871 C 53 53
29 Kazakhstan 11872 A 53 53
30 Kazakhstan 11873 G 53 53
31 Kazakhstan 11874 T 53 53
32 Kazakhstan 11875 A 53 53
33 Kazakhstan 11876 G 53 53
34 Kazakhstan 11877 T 53 53
35 Kazakhstan 11878 C 53 53
36 Kazakhstan 11879 T 53 53
37 Kazakhstan 11880 T 53 53
38 Kazakhstan 11881 A 53 53
39 Kazakhstan 11882 C 53 53
40 Kazakhstan 11883 T 53 53
41 Kazakhstan 11884 C 53 53
42 Kazakhstan 11885 T 53 53
43 Kazakhstan 11886 C 53 53
44 Kazakhstan 11887 A 53 53
45 Kazakhstan 11888 G 53 53
46 Kazakhstan 11889 T 53 53
47 Kazakhstan 11890 T 53 53
48 Kazakhstan 11891 T 53 53
49 Kazakhstan 11892 T 53 53
50 Kazakhstan 11893 G 53 53
51 Kazakhstan 11894 C 53 53
52 Kazakhstan 11895 A 53 53
53 Kazakhstan 11896 A 53 53
54 Kazakhstan 11897 C 53 53
55 Kazakhstan 11898 A 53 53
56 Kazakhstan 11899 A 53 53
57 Kazakhstan 11900 C 53 53
58 Kazakhstan 11901 T 53 53
59 Kazakhstan 11902 C 53 53
60 Kazakhstan 11903 A 53 53
61 Kazakhstan 11904 G 53 53
62 Kazakhstan 11905 A 53 53
63 Kazakhstan 11906 G 53 53
64 Kazakhstan 11907 T 53 53
65 Kazakhstan 11908 A 53 53
66 Kazakhstan 11909 G 53 53
67 Kazakhstan 11910 A 53 53
68 Kazakhstan 11911 A 53 53
69 Kazakhstan 11912 T 53 53
70 Kazakhstan 11913 C 53 53
71 Kazakhstan 11914 A 53 53
72 Kazakhstan 11915 T 53 53
73 Kazakhstan 11916 C T 53 50 Ser3884Leu
74 Kazakhstan 11917 A 53 53
75 Kazakhstan 11918 T 53 53
76 Kazakhstan 11919 C 53 53
77 Kazakhstan 11920 T 53 53
78 Kazakhstan 11921 A 53 53
79 Kazakhstan 11922 A 53 53
80 Kazakhstan 11923 A 53 53
81 Kazakhstan 11924 T 53 53
82 Kazakhstan 11925 T 53 53
83 Kazakhstan 11926 G 53 53
84 Kazakhstan 11927 T 53 53
85 Kazakhstan 11928 G 53 53
86 Kazakhstan 11929 G 53 53
87 Kazakhstan 11930 G 53 53
88 Kazakhstan 11931 C 53 53
89 Kazakhstan 11932 T 53 53
90 Kazakhstan 11933 C 53 53
91 Kazakhstan 11934 A 53 53
92 Kazakhstan 11935 A 53 53
93 Kazakhstan 11936 T 53 53
94 Kazakhstan 11937 G 53 53
95 Kazakhstan 11938 T 53 53
96 Kazakhstan 11939 G 53 53
97 Kazakhstan 11940 T 53 53
98 Kazakhstan 11941 C 53 53
99 Kazakhstan 11942 C 53 53
100 Kazakhstan 11943 A 53 53
101 Kazakhstan 11944 G 53 53
102 Kazakhstan 11945 T 53 53
103 Kazakhstan 11946 T 53 53
104 Kazakhstan 11947 A 53 53
105 Kazakhstan 11948 C 53 53
106 Kazakhstan 11949 A 53 53
107 Kazakhstan 11950 C 53 53
108 Kazakhstan 11951 A 53 53
109 Kazakhstan 11952 A 53 53
110 Kazakhstan 11953 T 53 53
111 Kazakhstan 11954 G 53 53
112 Kazakhstan 11955 A 53 53
113 Kazakhstan 11956 C 53 53
114 Kazakhstan 11957 A 53 53
115 Kazakhstan 11958 T 53 53
116 Kazakhstan 11959 T 53 53
117 Kazakhstan 11960 C 53 53
118 Kazakhstan 11961 T 53 53
119 Kazakhstan 11962 C 53 53
120 Kazakhstan 11963 T 53 53
121 Kazakhstan 11964 T 53 53
122 Kazakhstan 11965 A 53 53
123 Kazakhstan 11966 G 53 53
124 Kazakhstan 11967 C 53 53
125 Kazakhstan 11968 T 53 53
126 Kazakhstan 11969 A 53 53
127 Kazakhstan 11970 A 53 53
128 Kazakhstan 11971 A 53 53
129 Kazakhstan 11972 G 53 53
130 Kazakhstan 11973 A 53 53
131 Kazakhstan 11974 T 53 53
132 Kazakhstan 11975 A 53 53
133 Kazakhstan 11976 C 53 53
134 Kazakhstan 11977 T 53 53
135 Kazakhstan 11978 A 53 53
136 Kazakhstan 11979 C 53 53
137 Kazakhstan 11980 T 53 53
138 Kazakhstan 11981 G 53 53
139 Kazakhstan 11982 A 53 53
140 Kazakhstan 11983 A 53 53
141 Kazakhstan 11984 G 53 53
142 Kazakhstan 11985 C 53 53
143 Kazakhstan 11986 C 53 53
144 Kazakhstan 11987 T 53 53
145 Kazakhstan 11988 T 53 53
146 Kazakhstan 11989 T 53 53
147 Kazakhstan 11990 G 53 53
148 Kazakhstan 11991 A 53 53
149 Kazakhstan 11992 A 53 53
150 Kazakhstan 11993 A 53 53
151 Kazakhstan 11994 A 53 53
152 Kazakhstan 11995 A 53 53
153 Kazakhstan 11996 A 53 53
154 Kazakhstan 11997 T 53 53
155 Kazakhstan 11998 G 53 53
156 Kazakhstan 11999 G 53 53
157 Kazakhstan 12000 T 53 53
158 Kazakhstan 12001 T 53 53
159 Kazakhstan 12002 T 53 53
160 Kazakhstan 12003 C 53 53
161 Kazakhstan 12004 A 53 53
162 Kazakhstan 12005 C 53 53
163 Kazakhstan 12006 T 53 53
164 Kazakhstan 12007 A 53 53
165 Kazakhstan 12008 C 53 53
166 Kazakhstan 12009 T 53 53
167 Kazakhstan 12010 T 53 53
168 Kazakhstan 12011 T 53 53
169 Kazakhstan 12012 C 53 53
170 Kazakhstan 12013 T 53 53
171 Kazakhstan 12014 G 53 53
172 Kazakhstan 12015 T 53 53
173 Kazakhstan 12016 T 53 53
174 Kazakhstan 12017 T 53 53
175 Kazakhstan 12018 T 53 53
176 Kazakhstan 12019 G 53 53
177 Kazakhstan 12020 C 53 53
178 Kazakhstan 12021 T 53 53
179 Kazakhstan 12022 T 53 53
180 Kazakhstan 12023 T 53 53
181 Kazakhstan 12024 C 53 53
182 Kazakhstan 12025 C 53 53
183 Kazakhstan 12026 A 53 53
184 Kazakhstan 12027 T 53 53
185 Kazakhstan 12028 G 53 53
186 Kazakhstan 12029 C 53 53
187 Kazakhstan 12030 A 53 53
188 Kazakhstan 12031 G 53 53
189 Kazakhstan 12032 G 53 53
190 Kazakhstan 12033 G 53 53
191 Kazakhstan 12034 T 53 53
192 Kazakhstan 12035 G 53 53
193 Kazakhstan 12036 C 53 53
194 Kazakhstan 12037 T 53 53
195 Kazakhstan 12038 G 53 53
196 Kazakhstan 12039 T 53 53
197 Kazakhstan 12040 A 53 53
198 Kazakhstan 12041 G 53 53
199 Kazakhstan 12042 A 53 53
200 Kazakhstan 12043 C 53 53
201 Kazakhstan 12044 A 53 53
202 Kazakhstan 12045 T 53 53
203 Kazakhstan 12046 A 53 53
204 Kazakhstan 12047 A 53 53
205 Kazakhstan 12048 A 53 53
206 Kazakhstan 12049 C 53 53
207 Kazakhstan 12050 A 53 53
208 Kazakhstan 12051 A 53 53
209 Kazakhstan 12052 G 53 53
210 Kazakhstan 12053 C 53 53
211 Kazakhstan 12054 T 53 53
212 Kazakhstan 12055 T 53 53
213 Kazakhstan 12056 T 53 53
214 Kazakhstan 12057 G 53 53
215 Kazakhstan 12058 T 53 53
216 Kazakhstan 12059 G 53 53
217 Kazakhstan 12060 A 53 53
218 Kazakhstan 12061 A 53 53
219 Kazakhstan 12062 G 53 53
220 Kazakhstan 12063 A 53 53
221 Kazakhstan 12064 A 53 53
222 Kazakhstan 12065 A 53 53
223 Kazakhstan 12066 T 53 53
224 Kazakhstan 12067 G 53 53
225 Kazakhstan 12068 C 53 53
226 Kazakhstan 12069 T 53 53
227 Kazakhstan 12070 G 53 53
228 Kazakhstan 12071 G 53 53
229 Kazakhstan 12072 A 53 53
230 Kazakhstan 12073 C 53 53
231 Kazakhstan 12074 A 53 53
232 Kazakhstan 12075 A 53 53
233 Kazakhstan 12076 C 53 53
234 Kazakhstan 12077 A 53 53
235 Kazakhstan 12078 G 53 53
236 Kazakhstan 12079 G 53 53
237 Kazakhstan 12080 G 53 53
238 Kazakhstan 12081 C 53 53
239 Kazakhstan 12082 A 53 53
240 Kazakhstan 12083 A 53 53
241 Kazakhstan 12084 C 53 53
242 Kazakhstan 12085 C 53 53
243 Kazakhstan 12086 T 53 53
244 Kazakhstan 12087 T 53 53
245 Kazakhstan 12088 A 53 53
246 Kazakhstan 12089 C 53 53
247 Kazakhstan 12090 A 53 53
248 Kazakhstan 12091 A 53 53