National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                   1                
M   12               1                    
N   9                                    
Q   18                                    
R   6                                    
S   30                             1      
T   12               2               1    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Jordan 11843 T 579 579
1 Jordan 11844 C 579 579
2 Jordan 11845 T 579 579
3 Jordan 11846 A 579 579
4 Jordan 11847 A 579 579
5 Jordan 11848 A 579 579
6 Jordan 11849 A 579 579
7 Jordan 11850 T 579 579
8 Jordan 11851 G 579 579
9 Jordan 11852 T 579 579
10 Jordan 11853 C 579 579
11 Jordan 11854 A 579 579
12 Jordan 11855 G 579 579
13 Jordan 11856 A 579 579
14 Jordan 11857 T 579 579
15 Jordan 11858 G 579 579
16 Jordan 11859 T 579 579
17 Jordan 11860 A 579 579
18 Jordan 11861 A 579 579
19 Jordan 11862 A 579 579
20 Jordan 11863 G 579 579
21 Jordan 11864 T 579 579
22 Jordan 11865 G 579 579
23 Jordan 11866 C 579 579
24 Jordan 11867 A 579 579
25 Jordan 11868 C 579 579
26 Jordan 11869 A 579 579
27 Jordan 11870 T 579 579
28 Jordan 11871 C 579 579
29 Jordan 11872 A 579 579
30 Jordan 11873 G 579 579
31 Jordan 11874 T 579 579
32 Jordan 11875 A 579 579
33 Jordan 11876 G 579 579
34 Jordan 11877 T 579 579
35 Jordan 11878 C 579 579
36 Jordan 11879 T 579 579
37 Jordan 11880 T 579 579
38 Jordan 11881 A 579 579
39 Jordan 11882 C 579 579
40 Jordan 11883 T 579 579
41 Jordan 11884 C 579 579
42 Jordan 11885 T 579 579
43 Jordan 11886 C 579 579
44 Jordan 11887 A 579 579
45 Jordan 11888 G 579 579
46 Jordan 11889 T 579 579
47 Jordan 11890 T 579 579
48 Jordan 11891 T 579 579
49 Jordan 11892 T 579 579
50 Jordan 11893 G 579 579
51 Jordan 11894 C 579 579
52 Jordan 11895 A 579 579
53 Jordan 11896 A 579 579
54 Jordan 11897 C 579 579
55 Jordan 11898 A 579 579
56 Jordan 11899 A 579 579
57 Jordan 11900 C 579 579
58 Jordan 11901 T 579 579
59 Jordan 11902 C 579 579
60 Jordan 11903 A 579 579
61 Jordan 11904 G 579 579
62 Jordan 11905 A 579 579
63 Jordan 11906 G 579 579
64 Jordan 11907 T 579 579
65 Jordan 11908 A 579 579
66 Jordan 11909 G 579 579
67 Jordan 11910 A 579 579
68 Jordan 11911 A 579 579
69 Jordan 11912 T 579 579
70 Jordan 11913 C 579 579
71 Jordan 11914 A 579 579
72 Jordan 11915 T 579 579
73 Jordan 11916 C 579 579
74 Jordan 11917 A 579 579
75 Jordan 11918 T 579 579
76 Jordan 11919 C 579 579
77 Jordan 11920 T 579 579
78 Jordan 11921 A 579 579
79 Jordan 11922 A 579 579
80 Jordan 11923 A 579 579
81 Jordan 11924 T 579 579
82 Jordan 11925 T 579 579
83 Jordan 11926 G 579 579
84 Jordan 11927 T 579 579
85 Jordan 11928 G 579 579
86 Jordan 11929 G 579 579
87 Jordan 11930 G 579 579
88 Jordan 11931 C 579 579
89 Jordan 11932 T 579 579
90 Jordan 11933 C 579 579
91 Jordan 11934 A 579 579
92 Jordan 11935 A 579 579
93 Jordan 11936 T 579 579
94 Jordan 11937 G 579 579
95 Jordan 11938 T 579 579
96 Jordan 11939 G 579 579
97 Jordan 11940 T 579 579
98 Jordan 11941 C 579 579
99 Jordan 11942 C 579 579
100 Jordan 11943 A 579 579
101 Jordan 11944 G 579 579
102 Jordan 11945 T 579 579
103 Jordan 11946 T 579 579
104 Jordan 11947 A 579 579
105 Jordan 11948 C 579 579
106 Jordan 11949 A 579 579
107 Jordan 11950 C 579 579
108 Jordan 11951 A 579 579
109 Jordan 11952 A 579 579
110 Jordan 11953 T 579 579
111 Jordan 11954 G 579 579
112 Jordan 11955 A 579 579
113 Jordan 11956 C 579 579
114 Jordan 11957 A 579 579
115 Jordan 11958 T 579 579
116 Jordan 11959 T 579 579
117 Jordan 11960 C 579 579
118 Jordan 11961 T 579 579
119 Jordan 11962 C 579 579
120 Jordan 11963 T 579 579
121 Jordan 11964 T 579 579
122 Jordan 11965 A 579 579
123 Jordan 11966 G 579 579
124 Jordan 11967 C 579 579
125 Jordan 11968 T 579 579
126 Jordan 11969 A 579 579
127 Jordan 11970 A 579 579
128 Jordan 11971 A 579 579
129 Jordan 11972 G 579 579
130 Jordan 11973 A 579 579
131 Jordan 11974 T 579 579
132 Jordan 11975 A 579 579
133 Jordan 11976 C T 579 578 Thr3904Ile
134 Jordan 11977 T 579 579
135 Jordan 11978 A 579 579
136 Jordan 11979 C 579 579
137 Jordan 11980 T 579 579
138 Jordan 11981 G 579 579
139 Jordan 11982 A 579 579
140 Jordan 11983 A 579 579
141 Jordan 11984 G 579 579
142 Jordan 11985 C 579 579
143 Jordan 11986 C 579 579
144 Jordan 11987 T 579 579
145 Jordan 11988 T 579 579
146 Jordan 11989 T 579 579
147 Jordan 11990 G 579 579
148 Jordan 11991 A 579 579
149 Jordan 11992 A 579 579
150 Jordan 11993 A 579 579
151 Jordan 11994 A 579 579
152 Jordan 11995 A 579 579
153 Jordan 11996 A 579 579
154 Jordan 11997 T 579 579
155 Jordan 11998 G 579 579
156 Jordan 11999 G 579 579
157 Jordan 12000 T 579 579
158 Jordan 12001 T 579 579
159 Jordan 12002 T 579 579
160 Jordan 12003 C 579 579
161 Jordan 12004 A C 579 578 Ser3913Ser
162 Jordan 12005 C 579 579
163 Jordan 12006 T 579 579
164 Jordan 12007 A 579 579
165 Jordan 12008 C 579 579
166 Jordan 12009 T 579 579
167 Jordan 12010 T 579 579
168 Jordan 12011 T 579 579
169 Jordan 12012 C 579 579
170 Jordan 12013 T 579 579
171 Jordan 12014 G 579 579
172 Jordan 12015 T 579 579
173 Jordan 12016 T 579 579
174 Jordan 12017 T 579 579
175 Jordan 12018 T 579 579
176 Jordan 12019 G 579 579
177 Jordan 12020 C 579 579
178 Jordan 12021 T 579 579
179 Jordan 12022 T 579 579
180 Jordan 12023 T 579 579
181 Jordan 12024 C 579 579
182 Jordan 12025 C 579 579
183 Jordan 12026 A 579 579
184 Jordan 12027 T 579 579
185 Jordan 12028 G 579 579
186 Jordan 12029 C 579 579
187 Jordan 12030 A 579 579
188 Jordan 12031 G 579 579
189 Jordan 12032 G 579 579
190 Jordan 12033 G 579 579
191 Jordan 12034 T 579 579
192 Jordan 12035 G 579 579
193 Jordan 12036 C 579 579
194 Jordan 12037 T 579 579
195 Jordan 12038 G 579 579
196 Jordan 12039 T 579 579
197 Jordan 12040 A 579 579
198 Jordan 12041 G 579 579
199 Jordan 12042 A 579 579
200 Jordan 12043 C 579 579
201 Jordan 12044 A 579 579
202 Jordan 12045 T 579 579
203 Jordan 12046 A 579 579
204 Jordan 12047 A 579 579
205 Jordan 12048 A 579 579
206 Jordan 12049 C 579 579
207 Jordan 12050 A 579 579
208 Jordan 12051 A 579 579
209 Jordan 12052 G 579 579
210 Jordan 12053 C 579 579
211 Jordan 12054 T 579 579
212 Jordan 12055 T 579 579
213 Jordan 12056 T 579 579
214 Jordan 12057 G 579 579
215 Jordan 12058 T 579 579
216 Jordan 12059 G 579 579
217 Jordan 12060 A 579 579
218 Jordan 12061 A 579 579
219 Jordan 12062 G 579 579
220 Jordan 12063 A 579 579
221 Jordan 12064 A 579 579
222 Jordan 12065 A 579 579
223 Jordan 12066 T 579 579
224 Jordan 12067 G T 579 576 Met3934Ile
225 Jordan 12068 C T 579 570 Leu3935Leu
226 Jordan 12069 T 579 579
227 Jordan 12070 G 579 579
228 Jordan 12071 G 579 579
229 Jordan 12072 A 579 579
230 Jordan 12073 C 579 579
231 Jordan 12074 A 579 579
232 Jordan 12075 A 579 579
233 Jordan 12076 C 579 579
234 Jordan 12077 A 579 579
235 Jordan 12078 G 579 579
236 Jordan 12079 G 579 579
237 Jordan 12080 G 579 579
238 Jordan 12081 C 579 579
239 Jordan 12082 A 579 579
240 Jordan 12083 A 579 579
241 Jordan 12084 C T 579 578 Thr3940Ile
242 Jordan 12085 C T 579 576 Thr3940Thr
243 Jordan 12086 T 579 579
244 Jordan 12087 T 579 579
245 Jordan 12088 A 579 579
246 Jordan 12089 C 579 579
247 Jordan 12090 A 579 579
248 Jordan 12091 A 579 579