National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W Y
-   249                                      
?                                          
A   15                             1 1 3    
C   9   3                                  
D   15     3                               1
E   15           1                          
F   3                                      
G   3                                      
H   3                                      
I   6                                      
K   18                 1                    
L   45         4     1   9                  
M   12               1               1 1    
N   9                       2     1        
Q   18             1           2 3          
R   6                     1                
S   30         1         2         6        
T   12 1             1               2      
V   27               1                 3    
W   3                                      
Y                                          

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Japan 11843 T 17033 17033
1 Japan 11844 C 17033 17033
2 Japan 11845 T A 17033 17032 Ser3860Ser
3 Japan 11846 A 17033 17033
4 Japan 11847 A 17033 17033
5 Japan 11848 A 17033 17033
6 Japan 11849 A 17033 17033
7 Japan 11850 T 17033 17033
8 Japan 11851 G 17033 17033
9 Japan 11852 T 17033 17033
10 Japan 11853 C T 17033 17032 Ser3863Leu
11 Japan 11854 A 17033 17033
12 Japan 11855 G 17033 17033
13 Japan 11856 A 17033 17033
14 Japan 11857 T 17033 17033
15 Japan 11858 G 17033 17033
16 Japan 11859 T 17033 17033
17 Japan 11860 A 17033 17033
18 Japan 11861 A 17033 17033
19 Japan 11862 A 17033 17033
20 Japan 11863 G 17033 17033
21 Japan 11864 T 17033 17033
22 Japan 11865 G 17033 17033
23 Japan 11866 C T 17033 17028 Cys3867Cys
24 Japan 11867 A 17033 17033
25 Japan 11868 C 17033 17033
26 Japan 11869 A 17033 17033
27 Japan 11870 T 17033 17033
28 Japan 11871 C 17033 17033
29 Japan 11872 A G 17033 17032 Ser3869Ser
30 Japan 11873 G 17033 17033
31 Japan 11874 T 17033 17033
32 Japan 11875 A 17033 17033
33 Japan 11876 G 17033 17033
34 Japan 11877 T 17033 17033
35 Japan 11878 C 17033 17033
36 Japan 11879 T C 17033 17032 Leu3872Leu
37 Japan 11880 T 17033 17033
38 Japan 11881 A 17033 17033
39 Japan 11882 C 17033 17033
40 Japan 11883 T 17033 17033
41 Japan 11884 C T 17033 16999 Leu3873Leu
42 Japan 11885 T 17033 17033
43 Japan 11886 C 17033 17033
44 Japan 11887 A 17033 17033
45 Japan 11888 G 17033 17033
46 Japan 11889 T 17033 17033
47 Japan 11890 T 17033 17033
48 Japan 11891 T 17033 17033
49 Japan 11892 T 17033 17033
50 Japan 11893 G T 17033 17032 Leu3876Phe
51 Japan 11894 C 17033 17033
52 Japan 11895 A 17033 17033
53 Japan 11896 A 17033 17033
54 Japan 11897 C 17033 17033
55 Japan 11898 A G 17033 17032 Gln3878Arg
56 Japan 11899 A G 17033 17032 Gln3878Gln
57 Japan 11900 C 17033 17033
58 Japan 11901 T 17033 17033
59 Japan 11902 C 17033 17033
60 Japan 11903 A 17033 17033
61 Japan 11904 G 17033 17033
62 Japan 11905 A 17033 17033
63 Japan 11906 G 17033 17033
64 Japan 11907 T 17033 17033
65 Japan 11908 A G 17033 17032 Val3881Val
66 Japan 11909 G 17033 17033
67 Japan 11910 A 17033 17033
68 Japan 11911 A 17033 17033
69 Japan 11912 T 17033 17033
70 Japan 11913 C 17033 17033
71 Japan 11914 A G,C 17033 17022 Ser3883Ser-p.Ser3883Ser
72 Japan 11915 T 17033 17033
73 Japan 11916 C T 17033 17026 Ser3884Leu
74 Japan 11917 A 17033 17033
75 Japan 11918 T 17033 17033
76 Japan 11919 C T 17033 17021 Ser3885Phe
77 Japan 11920 T C 17033 17032 Ser3885Ser
78 Japan 11921 A 17033 17033
79 Japan 11922 A 17033 17033
80 Japan 11923 A 17033 17033
81 Japan 11924 T 17033 17033
82 Japan 11925 T 17033 17033
83 Japan 11926 G A 17033 17032 Leu3887Leu
84 Japan 11927 T 17033 17033
85 Japan 11928 G 17032 17032
86 Japan 11929 G 17032 17032
87 Japan 11930 G 17032 17032
88 Japan 11931 C 17032 17032
89 Japan 11932 T 17032 17032
90 Japan 11933 C 17032 17032
91 Japan 11934 A G 17032 17027 Gln3890Arg
92 Japan 11935 A G 17032 17031 Gln3890Gln
93 Japan 11936 T 17032 17032
94 Japan 11937 G 17032 17032
95 Japan 11938 T C 17032 17031 Cys3891Cys
96 Japan 11939 G A 17032 17030 Val3892Ile
97 Japan 11940 T 17032 17032
98 Japan 11941 C T 17032 17030 Val3892Val
99 Japan 11942 C 17032 17032
100 Japan 11943 A 17032 17032
101 Japan 11944 G T 17032 17027 Gln3893His
102 Japan 11945 T 17032 17032
103 Japan 11946 T 17032 17032
104 Japan 11947 A 17032 17032
105 Japan 11948 C 17032 17032
106 Japan 11949 A 17032 17032
107 Japan 11950 C 17032 17032
108 Japan 11951 A 17032 17032
109 Japan 11952 A 17032 17032
110 Japan 11953 T 17032 17032
111 Japan 11954 G 17032 17032
112 Japan 11955 A 17032 17032
113 Japan 11956 C T 17032 17024 Asp3897Asp
114 Japan 11957 A 17032 17032
115 Japan 11958 T 17032 17032
116 Japan 11959 T 17032 17032
117 Japan 11960 C A 17032 17031 Leu3899Ile
118 Japan 11961 T 17032 17032
119 Japan 11962 C T 17032 17031 Leu3899Leu
120 Japan 11963 T 17032 17032
121 Japan 11964 T 17032 17032
122 Japan 11965 A 17032 17032
123 Japan 11966 G 17032 17032
124 Japan 11967 C T 17032 17030 Ala3901Val
125 Japan 11968 T 17032 17032
126 Japan 11969 A 17032 17032
127 Japan 11970 A 17032 17032
128 Japan 11971 A 17032 17032
129 Japan 11972 G 17032 17032
130 Japan 11973 A 17032 17032
131 Japan 11974 T 17032 17031
132 Japan 11975 A 17032 17032
133 Japan 11976 C 17032 17032
134 Japan 11977 T 17032 17032
135 Japan 11978 A G 17032 17031 Thr3905Ala
136 Japan 11979 C 17032 17032
137 Japan 11980 T A 17032 17031 Thr3905Thr
138 Japan 11981 G 17032 17032
139 Japan 11982 A 17032 17032
140 Japan 11983 A 17032 17032
141 Japan 11984 G T 17032 17027 Ala3907Ser
142 Japan 11985 C 17032 17032
143 Japan 11986 C 17032 17032
144 Japan 11987 T 17032 17032
145 Japan 11988 T 17032 17032
146 Japan 11989 T 17032 17032
147 Japan 11990 G 17032 17032
148 Japan 11991 A G 17032 17031 Glu3909Gly
149 Japan 11992 A 17032 17032
150 Japan 11993 A 17032 17032
151 Japan 11994 A 17032 17032
152 Japan 11995 A 17032 17032
153 Japan 11996 A 17032 17032
154 Japan 11997 T 17032 17032
155 Japan 11998 G 17032 17032
156 Japan 11999 G 17032 17032
157 Japan 12000 T 17032 17032
158 Japan 12001 T 17032 17032
159 Japan 12002 T 17032 17032
160 Japan 12003 C 17032 17032
161 Japan 12004 A 17032 17032
162 Japan 12005 C T 17032 17031 Leu3914Leu
163 Japan 12006 T 17032 17032
164 Japan 12007 A 17032 17032
165 Japan 12008 C T 17032 17031 Leu3915Phe
166 Japan 12009 T 17032 17032
167 Japan 12010 T C 17032 17031 Leu3915Leu
168 Japan 12011 T 17032 17032
169 Japan 12012 C 17032 17031
170 Japan 12013 T 17032 17031
171 Japan 12014 G 17032 17032
172 Japan 12015 T 17032 17032
173 Japan 12016 T 17032 17032
174 Japan 12017 T C 17032 17030 Leu3918Leu
175 Japan 12018 T 17032 17031
176 Japan 12019 G 17032 17032
177 Japan 12020 C T 17032 17029 Leu3919Phe
178 Japan 12021 T 17032 17031
179 Japan 12022 T 17032 17031
180 Japan 12023 T 17032 17031
181 Japan 12024 C 17032 17031
182 Japan 12025 C T 17032 17026 Ser3920Ser
183 Japan 12026 A 17032 17031
184 Japan 12027 T 17032 17031
185 Japan 12028 G 17032 17031
186 Japan 12029 C 17032 17031
187 Japan 12030 A G 17032 17027 Gln3922Arg
188 Japan 12031 G 17032 17032
189 Japan 12032 G 17032 17032
190 Japan 12033 G 17032 17032
191 Japan 12034 T 17032 17032
192 Japan 12035 G 17032 17032
193 Japan 12036 C T 17032 17030 Ala3924Val
194 Japan 12037 T 17032 17032
195 Japan 12038 G 17032 17032
196 Japan 12039 T 17032 17032
197 Japan 12040 A G 17032 17031 Val3925Val
198 Japan 12041 G 17032 17032
199 Japan 12042 A 17032 17032
200 Japan 12043 C T 17032 17029 Asp3926Asp
201 Japan 12044 A 17032 17032
202 Japan 12045 T 17032 17032
203 Japan 12046 A 17032 17032
204 Japan 12047 A 17032 17032
205 Japan 12048 A 17032 17032
206 Japan 12049 C T 17032 15802 Asn3928Asn
207 Japan 12050 A 17032 17032
208 Japan 12051 A 17032 17032
209 Japan 12052 G A 17032 17031 Lys3929Lys
210 Japan 12053 C T 17032 16984 Leu3930Phe
211 Japan 12054 T 17032 17032
212 Japan 12055 T 17032 17032
213 Japan 12056 T 17032 17032
214 Japan 12057 G 17032 17032
215 Japan 12058 T C 17032 17031 Cys3931Cys
216 Japan 12059 G 17032 17032
217 Japan 12060 A 17032 17031
218 Japan 12061 A 17032 17032
219 Japan 12062 G 17032 17032
220 Japan 12063 A 17032 17032
221 Japan 12064 A 17032 17032
222 Japan 12065 A G 17032 17031 Met3934Val
223 Japan 12066 T C 17032 17031 Met3934Thr
224 Japan 12067 G T 17032 17031 Met3934Ile
225 Japan 12068 C T 17032 17024 Leu3935Leu
226 Japan 12069 T 17032 17032
227 Japan 12070 G T 17032 17030 Leu3935Leu
228 Japan 12071 G T 17032 17030 Asp3936Tyr
229 Japan 12072 A 17032 17032
230 Japan 12073 C T 17032 17028 Asp3936Asp
231 Japan 12074 A 17032 17032
232 Japan 12075 A G 17032 17000 Asn3937Ser
233 Japan 12076 C T 17032 17026 Asn3937Asn
234 Japan 12077 A 17032 17032
235 Japan 12078 G T 17032 17031 Arg3938Met
236 Japan 12079 G 17032 17032
237 Japan 12080 G A 17032 17030 Ala3939Thr
238 Japan 12081 C T 17032 17029 Ala3939Val
239 Japan 12082 A 17032 17032
240 Japan 12083 A 17032 17032
241 Japan 12084 C T 17032 17030 Thr3940Ile
242 Japan 12085 C T 17032 17029 Thr3940Thr
243 Japan 12086 T 17032 17032
244 Japan 12087 T 17032 17032
245 Japan 12088 A 17032 17032
246 Japan 12089 C 17032 17032
247 Japan 12090 A 17032 17032
248 Japan 12091 A 17032 17032