National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                   1                
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Jamaica 11843 T 9 9
1 Jamaica 11844 C 9 9
2 Jamaica 11845 T 9 9
3 Jamaica 11846 A 9 9
4 Jamaica 11847 A 9 9
5 Jamaica 11848 A 9 9
6 Jamaica 11849 A 9 9
7 Jamaica 11850 T 9 9
8 Jamaica 11851 G 9 9
9 Jamaica 11852 T 9 9
10 Jamaica 11853 C 9 9
11 Jamaica 11854 A 9 9
12 Jamaica 11855 G 9 9
13 Jamaica 11856 A 9 9
14 Jamaica 11857 T 9 9
15 Jamaica 11858 G 9 9
16 Jamaica 11859 T 9 9
17 Jamaica 11860 A 9 9
18 Jamaica 11861 A 9 9
19 Jamaica 11862 A 9 9
20 Jamaica 11863 G 9 9
21 Jamaica 11864 T 9 9
22 Jamaica 11865 G 9 9
23 Jamaica 11866 C 9 9
24 Jamaica 11867 A 9 9
25 Jamaica 11868 C 9 9
26 Jamaica 11869 A 9 9
27 Jamaica 11870 T 9 9
28 Jamaica 11871 C 9 9
29 Jamaica 11872 A 9 9
30 Jamaica 11873 G 9 9
31 Jamaica 11874 T 9 9
32 Jamaica 11875 A 9 9
33 Jamaica 11876 G 9 9
34 Jamaica 11877 T 9 9
35 Jamaica 11878 C 9 9
36 Jamaica 11879 T 9 9
37 Jamaica 11880 T 9 9
38 Jamaica 11881 A 9 9
39 Jamaica 11882 C 9 9
40 Jamaica 11883 T 9 9
41 Jamaica 11884 C 9 9
42 Jamaica 11885 T 9 9
43 Jamaica 11886 C 9 9
44 Jamaica 11887 A 9 9
45 Jamaica 11888 G 9 9
46 Jamaica 11889 T 9 9
47 Jamaica 11890 T 13 13
48 Jamaica 11891 T 13 13
49 Jamaica 11892 T 13 13
50 Jamaica 11893 G 13 13
51 Jamaica 11894 C 13 13
52 Jamaica 11895 A 13 13
53 Jamaica 11896 A 13 13
54 Jamaica 11897 C 13 13
55 Jamaica 11898 A 13 13
56 Jamaica 11899 A 13 13
57 Jamaica 11900 C 13 13
58 Jamaica 11901 T 13 13
59 Jamaica 11902 C 13 13
60 Jamaica 11903 A 13 13
61 Jamaica 11904 G 13 13
62 Jamaica 11905 A 13 13
63 Jamaica 11906 G 13 13
64 Jamaica 11907 T 13 13
65 Jamaica 11908 A 13 13
66 Jamaica 11909 G 13 13
67 Jamaica 11910 A 13 13
68 Jamaica 11911 A 13 13
69 Jamaica 11912 T 13 13
70 Jamaica 11913 C 13 13
71 Jamaica 11914 A 13 13
72 Jamaica 11915 T 13 13
73 Jamaica 11916 C T 13 12 Ser3884Leu
74 Jamaica 11917 A 13 13
75 Jamaica 11918 T 13 13
76 Jamaica 11919 C 13 13
77 Jamaica 11920 T 13 13
78 Jamaica 11921 A 13 13
79 Jamaica 11922 A 13 13
80 Jamaica 11923 A 13 13
81 Jamaica 11924 T 13 13
82 Jamaica 11925 T 13 13
83 Jamaica 11926 G 13 13
84 Jamaica 11927 T 13 13
85 Jamaica 11928 G 13 13
86 Jamaica 11929 G 13 13
87 Jamaica 11930 G 13 13
88 Jamaica 11931 C 13 13
89 Jamaica 11932 T 13 13
90 Jamaica 11933 C 13 13
91 Jamaica 11934 A 13 13
92 Jamaica 11935 A 13 13
93 Jamaica 11936 T 13 13
94 Jamaica 11937 G 13 13
95 Jamaica 11938 T 13 13
96 Jamaica 11939 G 13 13
97 Jamaica 11940 T 13 13
98 Jamaica 11941 C 13 13
99 Jamaica 11942 C 13 13
100 Jamaica 11943 A 13 13
101 Jamaica 11944 G 13 13
102 Jamaica 11945 T 13 13
103 Jamaica 11946 T 13 13
104 Jamaica 11947 A 13 13
105 Jamaica 11948 C 13 13
106 Jamaica 11949 A 13 13
107 Jamaica 11950 C 13 13
108 Jamaica 11951 A 13 13
109 Jamaica 11952 A 13 13
110 Jamaica 11953 T 13 13
111 Jamaica 11954 G 13 13
112 Jamaica 11955 A 13 13
113 Jamaica 11956 C 13 13
114 Jamaica 11957 A 13 13
115 Jamaica 11958 T 13 13
116 Jamaica 11959 T 13 13
117 Jamaica 11960 C 13 13
118 Jamaica 11961 T 13 13
119 Jamaica 11962 C 13 13
120 Jamaica 11963 T 13 13
121 Jamaica 11964 T 13 13
122 Jamaica 11965 A 13 13
123 Jamaica 11966 G 13 13
124 Jamaica 11967 C 13 13
125 Jamaica 11968 T 13 13
126 Jamaica 11969 A 13 13
127 Jamaica 11970 A 13 13
128 Jamaica 11971 A 13 13
129 Jamaica 11972 G 13 13
130 Jamaica 11973 A 13 13
131 Jamaica 11974 T 13 13
132 Jamaica 11975 A 13 13
133 Jamaica 11976 C 13 13
134 Jamaica 11977 T 13 13
135 Jamaica 11978 A 13 13
136 Jamaica 11979 C 13 13
137 Jamaica 11980 T 13 13
138 Jamaica 11981 G 13 13
139 Jamaica 11982 A 13 13
140 Jamaica 11983 A 13 13
141 Jamaica 11984 G 13 13
142 Jamaica 11985 C 13 13
143 Jamaica 11986 C 13 13
144 Jamaica 11987 T 13 13
145 Jamaica 11988 T 13 13
146 Jamaica 11989 T 13 13
147 Jamaica 11990 G 13 13
148 Jamaica 11991 A 13 13
149 Jamaica 11992 A 13 13
150 Jamaica 11993 A 13 13
151 Jamaica 11994 A 13 13
152 Jamaica 11995 A 13 13
153 Jamaica 11996 A 13 13
154 Jamaica 11997 T 13 13
155 Jamaica 11998 G 13 13
156 Jamaica 11999 G 13 13
157 Jamaica 12000 T 13 13
158 Jamaica 12001 T 13 13
159 Jamaica 12002 T 13 13
160 Jamaica 12003 C 13 13
161 Jamaica 12004 A 13 13
162 Jamaica 12005 C 13 13
163 Jamaica 12006 T 13 13
164 Jamaica 12007 A 13 13
165 Jamaica 12008 C 13 13
166 Jamaica 12009 T 13 13
167 Jamaica 12010 T 13 13
168 Jamaica 12011 T 13 13
169 Jamaica 12012 C 13 13
170 Jamaica 12013 T 13 13
171 Jamaica 12014 G 13 13
172 Jamaica 12015 T 13 13
173 Jamaica 12016 T 13 13
174 Jamaica 12017 T 13 13
175 Jamaica 12018 T 13 13
176 Jamaica 12019 G 13 13
177 Jamaica 12020 C 13 13
178 Jamaica 12021 T 13 13
179 Jamaica 12022 T 13 13
180 Jamaica 12023 T 13 13
181 Jamaica 12024 C 13 13
182 Jamaica 12025 C 13 13
183 Jamaica 12026 A 13 13
184 Jamaica 12027 T 13 13
185 Jamaica 12028 G 13 13
186 Jamaica 12029 C 13 13
187 Jamaica 12030 A 13 13
188 Jamaica 12031 G 13 13
189 Jamaica 12032 G 13 13
190 Jamaica 12033 G 13 13
191 Jamaica 12034 T 13 13
192 Jamaica 12035 G 13 13
193 Jamaica 12036 C 13 13
194 Jamaica 12037 T 13 13
195 Jamaica 12038 G 13 13
196 Jamaica 12039 T 13 13
197 Jamaica 12040 A 13 13
198 Jamaica 12041 G 13 13
199 Jamaica 12042 A 13 13
200 Jamaica 12043 C 13 13
201 Jamaica 12044 A 13 13
202 Jamaica 12045 T 13 13
203 Jamaica 12046 A 13 13
204 Jamaica 12047 A 13 13
205 Jamaica 12048 A 13 13
206 Jamaica 12049 C 13 13
207 Jamaica 12050 A 13 13
208 Jamaica 12051 A 13 13
209 Jamaica 12052 G 13 13
210 Jamaica 12053 C 13 13
211 Jamaica 12054 T 13 13
212 Jamaica 12055 T 13 13
213 Jamaica 12056 T 13 13
214 Jamaica 12057 G 13 13
215 Jamaica 12058 T 13 13
216 Jamaica 12059 G 13 13
217 Jamaica 12060 A 13 13
218 Jamaica 12061 A 13 13
219 Jamaica 12062 G 13 13
220 Jamaica 12063 A 13 13
221 Jamaica 12064 A 13 13
222 Jamaica 12065 A 13 13
223 Jamaica 12066 T 13 13
224 Jamaica 12067 G 13 13
225 Jamaica 12068 C 13 13
226 Jamaica 12069 T 13 13
227 Jamaica 12070 G 13 13
228 Jamaica 12071 G 13 13
229 Jamaica 12072 A 13 13
230 Jamaica 12073 C 13 13
231 Jamaica 12074 A 13 13
232 Jamaica 12075 A 13 13
233 Jamaica 12076 C 13 13
234 Jamaica 12077 A 13 13
235 Jamaica 12078 G 13 13
236 Jamaica 12079 G 13 13
237 Jamaica 12080 G 13 13
238 Jamaica 12081 C 13 13
239 Jamaica 12082 A 13 13
240 Jamaica 12083 A 13 13
241 Jamaica 12084 C 13 13
242 Jamaica 12085 C 13 13
243 Jamaica 12086 T 13 13
244 Jamaica 12087 T 13 13
245 Jamaica 12088 A 13 13
246 Jamaica 12089 C 13 13
247 Jamaica 12090 A 13 13
248 Jamaica 12091 A 13 13