National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9   1                                
D   15     2                              
E   15           1                        
F   3               1                    
G   3                                    
H   3                                    
I   6               1                    
K   18                       1            
L   45         2         5         1      
M   12               2                    
N   9                       2            
Q   18                                    
R   6                                    
S   30         1         3         1      
T   12               2               1    
V   27                                 3  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Italy 11843 T 2958 2958
1 Italy 11844 C 2958 2958
2 Italy 11845 T 2958 2958
3 Italy 11846 A 2958 2958
4 Italy 11847 A 2958 2958
5 Italy 11848 A 2958 2958
6 Italy 11849 A 2958 2958
7 Italy 11850 T 2958 2958
8 Italy 11851 G T 2958 2930 Met3862Ile
9 Italy 11852 T 2958 2958
10 Italy 11853 C T 2958 2957 Ser3863Leu
11 Italy 11854 A 2958 2958
12 Italy 11855 G 2958 2958
13 Italy 11856 A 2958 2958
14 Italy 11857 T 2958 2958
15 Italy 11858 G 2958 2958
16 Italy 11859 T 2958 2958
17 Italy 11860 A 2958 2958
18 Italy 11861 A 2958 2958
19 Italy 11862 A 2958 2958
20 Italy 11863 G 2958 2958
21 Italy 11864 T 2958 2958
22 Italy 11865 G 2958 2958
23 Italy 11866 C 2958 2958
24 Italy 11867 A 2958 2958
25 Italy 11868 C 2960 2960
26 Italy 11869 A 2960 2960
27 Italy 11870 T 2960 2960
28 Italy 11871 C T 2960 2959 Ser3869Leu
29 Italy 11872 A 2960 2960
30 Italy 11873 G 2960 2960
31 Italy 11874 T 2960 2960
32 Italy 11875 A 2960 2960
33 Italy 11876 G 2960 2960
34 Italy 11877 T 2960 2960
35 Italy 11878 C 2960 2960
36 Italy 11879 T 2960 2960
37 Italy 11880 T 2960 2960
38 Italy 11881 A 2960 2960
39 Italy 11882 C 2960 2960
40 Italy 11883 T 2960 2960
41 Italy 11884 C T 2960 2957 Leu3873Leu
42 Italy 11885 T 2960 2960
43 Italy 11886 C 2960 2960
44 Italy 11887 A 2960 2960
45 Italy 11888 G 2960 2960
46 Italy 11889 T 2960 2960
47 Italy 11890 T C 2960 2959 Val3875Val
48 Italy 11891 T 2960 2960
49 Italy 11892 T 2960 2960
50 Italy 11893 G 2960 2960
51 Italy 11894 C 2960 2960
52 Italy 11895 A 2960 2960
53 Italy 11896 A 2960 2960
54 Italy 11897 C 2960 2960
55 Italy 11898 A 2960 2960
56 Italy 11899 A 2960 2960
57 Italy 11900 C 2960 2960
58 Italy 11901 T 2960 2960
59 Italy 11902 C 2960 2960
60 Italy 11903 A 2960 2960
61 Italy 11904 G 2961 2961
62 Italy 11905 A 2961 2961
63 Italy 11906 G 2961 2961
64 Italy 11907 T 2961 2961
65 Italy 11908 A G 2961 2958 Val3881Val
66 Italy 11909 G 2961 2961
67 Italy 11910 A 2961 2961
68 Italy 11911 A 2961 2960
69 Italy 11912 T 2961 2960
70 Italy 11913 C 2961 2960
71 Italy 11914 A 2961 2960
72 Italy 11915 T 2961 2960
73 Italy 11916 C T 2961 2956 Ser3884Leu
74 Italy 11917 A 2961 2960
75 Italy 11918 T 2961 2960
76 Italy 11919 C T 2961 2953 Ser3885Phe
77 Italy 11920 T 2961 2960
78 Italy 11921 A 2961 2960
79 Italy 11922 A 2961 2960
80 Italy 11923 A 2960 2957
81 Italy 11924 T 2960 2957
82 Italy 11925 T 2960 2957
83 Italy 11926 G 2960 2957
84 Italy 11927 T 2960 2957
85 Italy 11928 G 2959 2956
86 Italy 11929 G 2959 2956
87 Italy 11930 G 2959 2956
88 Italy 11931 C 2959 2956
89 Italy 11932 T 2959 2956
90 Italy 11933 C 2959 2956
91 Italy 11934 A 2959 2956
92 Italy 11935 A 2959 2956
93 Italy 11936 T 2959 2956
94 Italy 11937 G 2959 2958
95 Italy 11938 T 2959 2958
96 Italy 11939 G 2959 2958
97 Italy 11940 T 2959 2958
98 Italy 11941 C T 2959 2956 Val3892Val
99 Italy 11942 C 2959 2959
100 Italy 11943 A 2959 2958
101 Italy 11944 G 2959 2958
102 Italy 11945 T 2959 2958
103 Italy 11946 T C 2959 2957 Leu3894Ser
104 Italy 11947 A 2959 2959
105 Italy 11948 C 2959 2959
106 Italy 11949 A 2959 2959
107 Italy 11950 C 2959 2959
108 Italy 11951 A 2959 2959
109 Italy 11952 A 2959 2958
110 Italy 11953 T 2959 2959
111 Italy 11954 G 2959 2959
112 Italy 11955 A 2959 2959
113 Italy 11956 C T 2959 2858 Asp3897Asp
114 Italy 11957 A 2959 2959
115 Italy 11958 T 2959 2959
116 Italy 11959 T C 2959 2958 Ile3898Ile
117 Italy 11960 C 2959 2959
118 Italy 11961 T 2959 2959
119 Italy 11962 C T 2959 2957 Leu3899Leu
120 Italy 11963 T 2959 2959
121 Italy 11964 T 2959 2959
122 Italy 11965 A 2959 2959
123 Italy 11966 G 2959 2959
124 Italy 11967 C 2959 2959
125 Italy 11968 T 2959 2959
126 Italy 11969 A 2959 2959
127 Italy 11970 A 2959 2959
128 Italy 11971 A 2959 2959
129 Italy 11972 G 2959 2959
130 Italy 11973 A 2959 2959
131 Italy 11974 T 2959 2959
132 Italy 11975 A 2959 2959
133 Italy 11976 C 2959 2959
134 Italy 11977 T 2959 2959
135 Italy 11978 A 2959 2959
136 Italy 11979 C T 2959 2958 Thr3905Ile
137 Italy 11980 T 2959 2958
138 Italy 11981 G 2959 2957
139 Italy 11982 A 2959 2958
140 Italy 11983 A 2959 2958
141 Italy 11984 G 2959 2958
142 Italy 11985 C 2959 2958
143 Italy 11986 C 2959 2958
144 Italy 11987 T A 2959 2957 Phe3908Ile
145 Italy 11988 T 2959 2958
146 Italy 11989 T 2959 2958
147 Italy 11990 G 2959 2958
148 Italy 11991 A G 2959 2956 Glu3909Gly
149 Italy 11992 A 2959 2958
150 Italy 11993 A 2959 2958
151 Italy 11994 A 2958 2957
152 Italy 11995 A 2958 2957
153 Italy 11996 A 2958 2957
154 Italy 11997 T 2958 2957
155 Italy 11998 G 2958 2957
156 Italy 11999 G 2958 2957
157 Italy 12000 T 2958 2957
158 Italy 12001 T 2958 2957
159 Italy 12002 T 2958 2957
160 Italy 12003 C 2958 2957
161 Italy 12004 A 2958 2956
162 Italy 12005 C T 2958 2955 Leu3914Leu
163 Italy 12006 T 2958 2956
164 Italy 12007 A 2958 2954
165 Italy 12008 C T 2958 2949 Leu3915Phe
166 Italy 12009 T 2958 2954
167 Italy 12010 T 2958 2954
168 Italy 12011 T 2958 2955
169 Italy 12012 C 2958 2955
170 Italy 12013 T 2958 2955
171 Italy 12014 G 2958 2955
172 Italy 12015 T 2958 2955
173 Italy 12016 T 2958 2955
174 Italy 12017 T 2958 2955
175 Italy 12018 T 2958 2955
176 Italy 12019 G 2958 2955
177 Italy 12020 C 2958 2954
178 Italy 12021 T 2958 2955
179 Italy 12022 T 2958 2955
180 Italy 12023 T 2958 2955
181 Italy 12024 C 2958 2955
182 Italy 12025 C T 2958 2954 Ser3920Ser
183 Italy 12026 A 2958 2955
184 Italy 12027 T 2959 2956
185 Italy 12028 G 2959 2956
186 Italy 12029 C 2959 2956
187 Italy 12030 A 2959 2955
188 Italy 12031 G 2959 2955
189 Italy 12032 G 2959 2955
190 Italy 12033 G 2959 2955
191 Italy 12034 T 2959 2955
192 Italy 12035 G 2960 2959
193 Italy 12036 C 2960 2958
194 Italy 12037 T 2960 2959
195 Italy 12038 G 2960 2959
196 Italy 12039 T 2961 2960
197 Italy 12040 A 2961 2960
198 Italy 12041 G 2961 2960
199 Italy 12042 A 2961 2960
200 Italy 12043 C T 2961 2951 Asp3926Asp
201 Italy 12044 A 2961 2960
202 Italy 12045 T 2961 2960
203 Italy 12046 A 2961 2961
204 Italy 12047 A 2961 2961
205 Italy 12048 A 2961 2961
206 Italy 12049 C T 2961 2959 Asn3928Asn
207 Italy 12050 A 2961 2961
208 Italy 12051 A 2961 2961
209 Italy 12052 G T 2961 2958 Lys3929Asn
210 Italy 12053 C T 2961 2959 Leu3930Phe
211 Italy 12054 T 2961 2961
212 Italy 12055 T 2961 2961
213 Italy 12056 T 2961 2961
214 Italy 12057 G 2961 2961
215 Italy 12058 T C 2961 2960 Cys3931Cys
216 Italy 12059 G 2961 2961
217 Italy 12060 A 2961 2961
218 Italy 12061 A 2961 2961
219 Italy 12062 G 2961 2961
220 Italy 12063 A 2961 2961
221 Italy 12064 A 2961 2961
222 Italy 12065 A 2961 2961
223 Italy 12066 T 2961 2961
224 Italy 12067 G T 2961 2958 Met3934Ile
225 Italy 12068 C T 2961 2959 Leu3935Leu
226 Italy 12069 T 2961 2961
227 Italy 12070 G A 2961 2960 Leu3935Leu
228 Italy 12071 G 2961 2961
229 Italy 12072 A 2961 2961
230 Italy 12073 C 2961 2961
231 Italy 12074 A 2961 2961
232 Italy 12075 A 2961 2961
233 Italy 12076 C T 2961 2955 Asn3937Asn
234 Italy 12077 A 2961 2961
235 Italy 12078 G 2961 2961
236 Italy 12079 G 2961 2961
237 Italy 12080 G 2961 2961
238 Italy 12081 C 2961 2961
239 Italy 12082 A 2961 2961
240 Italy 12083 A 2961 2961
241 Italy 12084 C T 2961 2957 Thr3940Ile
242 Italy 12085 C T 2961 2960 Thr3940Thr
243 Italy 12086 T 2961 2961
244 Italy 12087 T 2961 2961
245 Italy 12088 A 2961 2961
246 Italy 12089 C 2961 2961
247 Italy 12090 A 2961 2961
248 Italy 12091 A 2961 2961