National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                 2  
C   9                                    
D   15     1                              
E   15           1                        
F   3                                    
G   3                                    
H   3             1                      
I   6                                    
K   18                                    
L   45         1         1                
M   12               3                    
N   9                       1            
Q   18             1                      
R   6                                    
S   30                   2         1      
T   12               1                    
V   27                                 1  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Ireland 11843 T 1958 1958
1 Ireland 11844 C 1958 1958
2 Ireland 11845 T 1958 1958
3 Ireland 11846 A 1958 1958
4 Ireland 11847 A 1958 1958
5 Ireland 11848 A 1958 1958
6 Ireland 11849 A 1958 1958
7 Ireland 11850 T 1958 1958
8 Ireland 11851 G T 1958 1944 Met3862Ile
9 Ireland 11852 T 1958 1958
10 Ireland 11853 C 1958 1958
11 Ireland 11854 A 1958 1958
12 Ireland 11855 G 1958 1958
13 Ireland 11856 A 1958 1958
14 Ireland 11857 T 1959 1959
15 Ireland 11858 G 1959 1959
16 Ireland 11859 T 1959 1959
17 Ireland 11860 A 1959 1959
18 Ireland 11861 A 1959 1959
19 Ireland 11862 A 1959 1959
20 Ireland 11863 G 1959 1959
21 Ireland 11864 T 1959 1959
22 Ireland 11865 G 1959 1959
23 Ireland 11866 C 1959 1959
24 Ireland 11867 A 1959 1959
25 Ireland 11868 C 1959 1959
26 Ireland 11869 A 1959 1959
27 Ireland 11870 T 1959 1959
28 Ireland 11871 C 1959 1959
29 Ireland 11872 A 1959 1959
30 Ireland 11873 G 1959 1959
31 Ireland 11874 T 1959 1959
32 Ireland 11875 A 1959 1959
33 Ireland 11876 G 1959 1959
34 Ireland 11877 T 1959 1959
35 Ireland 11878 C 1959 1959
36 Ireland 11879 T 1959 1958
37 Ireland 11880 T 1959 1958
38 Ireland 11881 A 1959 1958
39 Ireland 11882 C 1959 1958
40 Ireland 11883 T 1959 1958
41 Ireland 11884 C 1959 1958
42 Ireland 11885 T 1959 1958
43 Ireland 11886 C T 1959 1947 Ser3874Leu
44 Ireland 11887 A 1959 1958
45 Ireland 11888 G 1959 1958
46 Ireland 11889 T 1959 1958
47 Ireland 11890 T 1973 1973
48 Ireland 11891 T 1973 1973
49 Ireland 11892 T 1973 1973
50 Ireland 11893 G 1973 1973
51 Ireland 11894 C 1973 1973
52 Ireland 11895 A 1973 1973
53 Ireland 11896 A 1973 1973
54 Ireland 11897 C 1973 1973
55 Ireland 11898 A 1973 1973
56 Ireland 11899 A 1973 1973
57 Ireland 11900 C 1973 1973
58 Ireland 11901 T 1973 1973
59 Ireland 11902 C 1973 1973
60 Ireland 11903 A 1973 1973
61 Ireland 11904 G 1973 1973
62 Ireland 11905 A 1973 1973
63 Ireland 11906 G 1973 1973
64 Ireland 11907 T 1973 1973
65 Ireland 11908 A 1973 1973
66 Ireland 11909 G 1973 1973
67 Ireland 11910 A 1973 1973
68 Ireland 11911 A 1973 1973
69 Ireland 11912 T 1973 1973
70 Ireland 11913 C 1973 1973
71 Ireland 11914 A 1973 1973
72 Ireland 11915 T 1973 1973
73 Ireland 11916 C T 1973 1971 Ser3884Leu
74 Ireland 11917 A 1973 1973
75 Ireland 11918 T 1973 1973
76 Ireland 11919 C 1973 1973
77 Ireland 11920 T 1973 1973
78 Ireland 11921 A 1973 1973
79 Ireland 11922 A 1973 1973
80 Ireland 11923 A 1973 1973
81 Ireland 11924 T 1973 1973
82 Ireland 11925 T 1973 1973
83 Ireland 11926 G 1973 1973
84 Ireland 11927 T 1973 1973
85 Ireland 11928 G 1972 1972
86 Ireland 11929 G 1972 1972
87 Ireland 11930 G 1972 1972
88 Ireland 11931 C 1972 1972
89 Ireland 11932 T 1972 1972
90 Ireland 11933 C 1972 1972
91 Ireland 11934 A 1972 1972
92 Ireland 11935 A 1972 1972
93 Ireland 11936 T 1972 1972
94 Ireland 11937 G 1972 1972
95 Ireland 11938 T 1972 1972
96 Ireland 11939 G 1972 1972
97 Ireland 11940 T 1972 1972
98 Ireland 11941 C T 1972 1968 Val3892Val
99 Ireland 11942 C 1972 1972
100 Ireland 11943 A 1972 1972
101 Ireland 11944 G 1972 1972
102 Ireland 11945 T 1972 1972
103 Ireland 11946 T 1972 1972
104 Ireland 11947 A 1972 1972
105 Ireland 11948 C 1972 1972
106 Ireland 11949 A 1972 1972
107 Ireland 11950 C T 1971 1970 His3895His
108 Ireland 11951 A 1971 1971
109 Ireland 11952 A 1971 1971
110 Ireland 11953 T 1971 1971
111 Ireland 11954 G 1971 1971
112 Ireland 11955 A 1971 1971
113 Ireland 11956 C 1971 1971
114 Ireland 11957 A 1971 1971
115 Ireland 11958 T 1971 1971
116 Ireland 11959 T 1971 1971
117 Ireland 11960 C 1971 1971
118 Ireland 11961 T 1971 1971
119 Ireland 11962 C 1971 1971
120 Ireland 11963 T 1971 1971
121 Ireland 11964 T 1971 1971
122 Ireland 11965 A 1971 1971
123 Ireland 11966 G 1971 1971
124 Ireland 11967 C T 1971 1970 Ala3901Val
125 Ireland 11968 T 1971 1971
126 Ireland 11969 A 1971 1971
127 Ireland 11970 A 1971 1971
128 Ireland 11971 A 1971 1971
129 Ireland 11972 G 1971 1971
130 Ireland 11973 A 1971 1971
131 Ireland 11974 T 1971 1971
132 Ireland 11975 A 1971 1971
133 Ireland 11976 C 1971 1971
134 Ireland 11977 T 1971 1971
135 Ireland 11978 A 1971 1971
136 Ireland 11979 C 1971 1971
137 Ireland 11980 T 1971 1971
138 Ireland 11981 G 1971 1971
139 Ireland 11982 A 1971 1971
140 Ireland 11983 A 1971 1971
141 Ireland 11984 G 1971 1971
142 Ireland 11985 C 1971 1971
143 Ireland 11986 C 1971 1971
144 Ireland 11987 T 1971 1971
145 Ireland 11988 T 1971 1971
146 Ireland 11989 T 1971 1971
147 Ireland 11990 G 1971 1971
148 Ireland 11991 A G 1971 1970 Glu3909Gly
149 Ireland 11992 A 1971 1971
150 Ireland 11993 A 1971 1971
151 Ireland 11994 A 1971 1971
152 Ireland 11995 A 1971 1971
153 Ireland 11996 A 1971 1971
154 Ireland 11997 T 1971 1971
155 Ireland 11998 G 1971 1971
156 Ireland 11999 G 1971 1970
157 Ireland 12000 T 1971 1971
158 Ireland 12001 T 1971 1971
159 Ireland 12002 T 1971 1971
160 Ireland 12003 C 1971 1971
161 Ireland 12004 A 1971 1971
162 Ireland 12005 C 1971 1971
163 Ireland 12006 T 1971 1971
164 Ireland 12007 A 1971 1971
165 Ireland 12008 C 1971 1971
166 Ireland 12009 T 1971 1971
167 Ireland 12010 T 1971 1971
168 Ireland 12011 T 1971 1971
169 Ireland 12012 C 1971 1971
170 Ireland 12013 T 1971 1971
171 Ireland 12014 G 1971 1971
172 Ireland 12015 T 1971 1971
173 Ireland 12016 T 1971 1971
174 Ireland 12017 T 1971 1971
175 Ireland 12018 T 1971 1971
176 Ireland 12019 G 1971 1971
177 Ireland 12020 C 1971 1971
178 Ireland 12021 T 1971 1971
179 Ireland 12022 T 1971 1971
180 Ireland 12023 T 1971 1971
181 Ireland 12024 C 1971 1971
182 Ireland 12025 C T 1971 1970 Ser3920Ser
183 Ireland 12026 A 1971 1971
184 Ireland 12027 T 1971 1971
185 Ireland 12028 G T 1971 1970 Met3921Ile
186 Ireland 12029 C 1971 1971
187 Ireland 12030 A 1971 1971
188 Ireland 12031 G T 1971 1970 Gln3922His
189 Ireland 12032 G 1971 1971
190 Ireland 12033 G 1971 1971
191 Ireland 12034 T 1971 1971
192 Ireland 12035 G 1971 1971
193 Ireland 12036 C 1971 1970
194 Ireland 12037 T 1971 1971
195 Ireland 12038 G 1971 1971
196 Ireland 12039 T 1971 1971
197 Ireland 12040 A 1971 1971
198 Ireland 12041 G 1971 1971
199 Ireland 12042 A 1971 1971
200 Ireland 12043 C 1971 1971
201 Ireland 12044 A 1971 1971
202 Ireland 12045 T 1971 1971
203 Ireland 12046 A 1971 1971
204 Ireland 12047 A 1971 1971
205 Ireland 12048 A 1971 1971
206 Ireland 12049 C 1971 1971
207 Ireland 12050 A 1971 1971
208 Ireland 12051 A 1971 1971
209 Ireland 12052 G 1971 1971
210 Ireland 12053 C T 1971 1964 Leu3930Phe
211 Ireland 12054 T 1971 1971
212 Ireland 12055 T 1971 1971
213 Ireland 12056 T 1971 1971
214 Ireland 12057 G 1971 1971
215 Ireland 12058 T 1971 1971
216 Ireland 12059 G 1971 1971
217 Ireland 12060 A 1971 1971
218 Ireland 12061 A 1971 1971
219 Ireland 12062 G 1971 1971
220 Ireland 12063 A 1971 1971
221 Ireland 12064 A 1971 1971
222 Ireland 12065 A 1971 1971
223 Ireland 12066 T 1971 1971
224 Ireland 12067 G T 1971 1970 Met3934Ile
225 Ireland 12068 C T 1971 1970 Leu3935Leu
226 Ireland 12069 T 1971 1971
227 Ireland 12070 G 1971 1971
228 Ireland 12071 G 1971 1971
229 Ireland 12072 A 1971 1971
230 Ireland 12073 C T 1971 1968 Asp3936Asp
231 Ireland 12074 A 1971 1971
232 Ireland 12075 A 1971 1971
233 Ireland 12076 C T 1971 1952 Asn3937Asn
234 Ireland 12077 A 1971 1971
235 Ireland 12078 G 1971 1971
236 Ireland 12079 G 1971 1971
237 Ireland 12080 G 1971 1971
238 Ireland 12081 C T 1971 1970 Ala3939Val
239 Ireland 12082 A 1971 1971
240 Ireland 12083 A 1971 1971
241 Ireland 12084 C T 1971 1970 Thr3940Ile
242 Ireland 12085 C 1971 1971
243 Ireland 12086 T 1971 1971
244 Ireland 12087 T 1971 1971
245 Ireland 12088 A 1971 1971
246 Ireland 12089 C 1971 1971
247 Ireland 12090 A 1971 1971
248 Ireland 12091 A 1971 1971