National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.
Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15     1                              
E   15                                    
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                                    
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                 1  
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide
Contoury Position Reference Alt. NSR NS AAchange
0 Iraq 11843 T 31 31
1 Iraq 11844 C 31 31
2 Iraq 11845 T 31 31
3 Iraq 11846 A 31 31
4 Iraq 11847 A 31 31
5 Iraq 11848 A 31 31
6 Iraq 11849 A 31 31
7 Iraq 11850 T 31 31
8 Iraq 11851 G 31 31
9 Iraq 11852 T 31 31
10 Iraq 11853 C 31 31
11 Iraq 11854 A 31 31
12 Iraq 11855 G 31 31
13 Iraq 11856 A 31 31
14 Iraq 11857 T 31 31
15 Iraq 11858 G 31 31
16 Iraq 11859 T 31 31
17 Iraq 11860 A 31 31
18 Iraq 11861 A 31 31
19 Iraq 11862 A 31 31
20 Iraq 11863 G 31 31
21 Iraq 11864 T 31 31
22 Iraq 11865 G 31 31
23 Iraq 11866 C 31 31
24 Iraq 11867 A 31 31
25 Iraq 11868 C 31 31
26 Iraq 11869 A 31 31
27 Iraq 11870 T 31 31
28 Iraq 11871 C 31 31
29 Iraq 11872 A 31 31
30 Iraq 11873 G 31 31
31 Iraq 11874 T 31 31
32 Iraq 11875 A 31 31
33 Iraq 11876 G 31 31
34 Iraq 11877 T 31 31
35 Iraq 11878 C 31 31
36 Iraq 11879 T 31 31
37 Iraq 11880 T 31 31
38 Iraq 11881 A 31 31
39 Iraq 11882 C 31 31
40 Iraq 11883 T 31 31
41 Iraq 11884 C 31 31
42 Iraq 11885 T 31 31
43 Iraq 11886 C 31 31
44 Iraq 11887 A 31 31
45 Iraq 11888 G 31 31
46 Iraq 11889 T 31 31
47 Iraq 11890 T 31 31
48 Iraq 11891 T 31 31
49 Iraq 11892 T 31 31
50 Iraq 11893 G 31 31
51 Iraq 11894 C 31 31
52 Iraq 11895 A 31 31
53 Iraq 11896 A 31 31
54 Iraq 11897 C 31 31
55 Iraq 11898 A 31 31
56 Iraq 11899 A 31 31
57 Iraq 11900 C 31 31
58 Iraq 11901 T 31 31
59 Iraq 11902 C 31 31
60 Iraq 11903 A 31 31
61 Iraq 11904 G 31 31
62 Iraq 11905 A 31 31
63 Iraq 11906 G 31 31
64 Iraq 11907 T 31 31
65 Iraq 11908 A 31 31
66 Iraq 11909 G 31 31
67 Iraq 11910 A 31 31
68 Iraq 11911 A 31 31
69 Iraq 11912 T 31 31
70 Iraq 11913 C 31 31
71 Iraq 11914 A 31 31
72 Iraq 11915 T 31 31
73 Iraq 11916 C 31 31
74 Iraq 11917 A 31 31
75 Iraq 11918 T 31 31
76 Iraq 11919 C 31 31
77 Iraq 11920 T 31 31
78 Iraq 11921 A 31 31
79 Iraq 11922 A 31 31
80 Iraq 11923 A 31 31
81 Iraq 11924 T 31 31
82 Iraq 11925 T 31 31
83 Iraq 11926 G 31 31
84 Iraq 11927 T 31 31
85 Iraq 11928 G 31 31
86 Iraq 11929 G 31 31
87 Iraq 11930 G 31 31
88 Iraq 11931 C 31 31
89 Iraq 11932 T 31 31
90 Iraq 11933 C 31 31
91 Iraq 11934 A 31 31
92 Iraq 11935 A 31 31
93 Iraq 11936 T 31 31
94 Iraq 11937 G 31 31
95 Iraq 11938 T 31 31
96 Iraq 11939 G 31 31
97 Iraq 11940 T 31 31
98 Iraq 11941 C T 31 30 Val3892Val
99 Iraq 11942 C 31 31
100 Iraq 11943 A 31 31
101 Iraq 11944 G 31 31
102 Iraq 11945 T 31 31
103 Iraq 11946 T 31 31
104 Iraq 11947 A 31 31
105 Iraq 11948 C 31 31
106 Iraq 11949 A 31 31
107 Iraq 11950 C 31 31
108 Iraq 11951 A 31 31
109 Iraq 11952 A 31 31
110 Iraq 11953 T 31 31
111 Iraq 11954 G 31 31
112 Iraq 11955 A 31 31
113 Iraq 11956 C 31 31
114 Iraq 11957 A 31 31
115 Iraq 11958 T 31 31
116 Iraq 11959 T 31 31
117 Iraq 11960 C 31 31
118 Iraq 11961 T 31 31
119 Iraq 11962 C 31 31
120 Iraq 11963 T 31 31
121 Iraq 11964 T 31 31
122 Iraq 11965 A 31 31
123 Iraq 11966 G 31 31
124 Iraq 11967 C 31 31
125 Iraq 11968 T 31 31
126 Iraq 11969 A 31 31
127 Iraq 11970 A 31 31
128 Iraq 11971 A 31 31
129 Iraq 11972 G 31 31
130 Iraq 11973 A 31 31
131 Iraq 11974 T 31 31
132 Iraq 11975 A 31 31
133 Iraq 11976 C 31 31
134 Iraq 11977 T 31 31
135 Iraq 11978 A 31 31
136 Iraq 11979 C 31 31
137 Iraq 11980 T 31 31
138 Iraq 11981 G 31 31
139 Iraq 11982 A 31 31
140 Iraq 11983 A 31 31
141 Iraq 11984 G 31 31
142 Iraq 11985 C 31 31
143 Iraq 11986 C 31 31
144 Iraq 11987 T 31 31
145 Iraq 11988 T 31 31
146 Iraq 11989 T 31 31
147 Iraq 11990 G 31 31
148 Iraq 11991 A 31 31
149 Iraq 11992 A 31 31
150 Iraq 11993 A 31 31
151 Iraq 11994 A 31 31
152 Iraq 11995 A 31 31
153 Iraq 11996 A 31 31
154 Iraq 11997 T 31 31
155 Iraq 11998 G 31 31
156 Iraq 11999 G 31 31
157 Iraq 12000 T 31 31
158 Iraq 12001 T 31 31
159 Iraq 12002 T 31 31
160 Iraq 12003 C 31 31
161 Iraq 12004 A 31 31
162 Iraq 12005 C 31 31
163 Iraq 12006 T 31 31
164 Iraq 12007 A 31 31
165 Iraq 12008 C 31 31
166 Iraq 12009 T 31 31
167 Iraq 12010 T 31 31
168 Iraq 12011 T 31 31
169 Iraq 12012 C 31 31
170 Iraq 12013 T 31 31
171 Iraq 12014 G 31 31
172 Iraq 12015 T 31 31
173 Iraq 12016 T 31 31
174 Iraq 12017 T 31 31
175 Iraq 12018 T 31 31
176 Iraq 12019 G 31 31
177 Iraq 12020 C 31 31
178 Iraq 12021 T 31 31
179 Iraq 12022 T 31 31
180 Iraq 12023 T 31 31
181 Iraq 12024 C 31 31
182 Iraq 12025 C 31 31
183 Iraq 12026 A 31 31
184 Iraq 12027 T 31 31
185 Iraq 12028 G 31 31
186 Iraq 12029 C 31 31
187 Iraq 12030 A 31 31
188 Iraq 12031 G 31 31
189 Iraq 12032 G 31 31
190 Iraq 12033 G 31 31
191 Iraq 12034 T 31 31
192 Iraq 12035 G 31 31
193 Iraq 12036 C 31 31
194 Iraq 12037 T 31 31
195 Iraq 12038 G 31 31
196 Iraq 12039 T 31 31
197 Iraq 12040 A 31 31
198 Iraq 12041 G 31 31
199 Iraq 12042 A 31 31
200 Iraq 12043 C T 31 30 Asp3926Asp
201 Iraq 12044 A 31 31
202 Iraq 12045 T 31 31
203 Iraq 12046 A 31 31
204 Iraq 12047 A 31 31
205 Iraq 12048 A 31 31
206 Iraq 12049 C 31 31
207 Iraq 12050 A 31 31
208 Iraq 12051 A 31 31
209 Iraq 12052 G 31 31
210 Iraq 12053 C 31 31
211 Iraq 12054 T 31 31
212 Iraq 12055 T 31 31
213 Iraq 12056 T 31 31
214 Iraq 12057 G 31 31
215 Iraq 12058 T 31 31
216 Iraq 12059 G 31 31
217 Iraq 12060 A 31 31
218 Iraq 12061 A 31 31
219 Iraq 12062 G 31 31
220 Iraq 12063 A 31 31
221 Iraq 12064 A 31 31
222 Iraq 12065 A 31 31
223 Iraq 12066 T 31 31
224 Iraq 12067 G 31 31
225 Iraq 12068 C 31 31
226 Iraq 12069 T 31 31
227 Iraq 12070 G 31 31
228 Iraq 12071 G 31 31
229 Iraq 12072 A 31 31
230 Iraq 12073 C 31 31
231 Iraq 12074 A 31 31
232 Iraq 12075 A 31 31
233 Iraq 12076 C 31 31
234 Iraq 12077 A 31 31
235 Iraq 12078 G 31 31
236 Iraq 12079 G 31 31
237 Iraq 12080 G 31 31
238 Iraq 12081 C 31 31
239 Iraq 12082 A 31 31
240 Iraq 12083 A 31 31
241 Iraq 12084 C 31 31
242 Iraq 12085 C 31 31
243 Iraq 12086 T 31 31
244 Iraq 12087 T 31 31
245 Iraq 12088 A 31 31
246 Iraq 12089 C 31 31
247 Iraq 12090 A 31 31
248 Iraq 12091 A 31 31