National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
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Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  - ? A C D E F G H I K L M N Q R S T V W
-   249                                    
?                                        
A   15                                    
C   9                                    
D   15                                    
E   15           1                        
F   3                                    
G   3                                    
H   3                                    
I   6                                    
K   18                                    
L   45                             1      
M   12                                    
N   9                                    
Q   18                                    
R   6                                    
S   30                                    
T   12                                    
V   27                                    
W   3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Iran 11843 T 35 35
1 Iran 11844 C 35 35
2 Iran 11845 T 35 35
3 Iran 11846 A 35 35
4 Iran 11847 A 35 35
5 Iran 11848 A 35 35
6 Iran 11849 A 35 35
7 Iran 11850 T 35 35
8 Iran 11851 G 35 35
9 Iran 11852 T 35 35
10 Iran 11853 C 35 35
11 Iran 11854 A 35 35
12 Iran 11855 G 35 35
13 Iran 11856 A 35 35
14 Iran 11857 T 35 35
15 Iran 11858 G 35 35
16 Iran 11859 T 35 35
17 Iran 11860 A 35 35
18 Iran 11861 A 35 35
19 Iran 11862 A 35 35
20 Iran 11863 G 35 35
21 Iran 11864 T 35 35
22 Iran 11865 G 35 35
23 Iran 11866 C 35 35
24 Iran 11867 A 35 35
25 Iran 11868 C 35 35
26 Iran 11869 A 35 35
27 Iran 11870 T 35 35
28 Iran 11871 C 35 35
29 Iran 11872 A 35 35
30 Iran 11873 G 35 35
31 Iran 11874 T 35 35
32 Iran 11875 A 35 35
33 Iran 11876 G 35 35
34 Iran 11877 T 35 35
35 Iran 11878 C 35 34
36 Iran 11879 T 35 35
37 Iran 11880 T C 35 34 Leu3872Ser
38 Iran 11881 A 35 35
39 Iran 11882 C 35 35
40 Iran 11883 T 35 35
41 Iran 11884 C 35 35
42 Iran 11885 T 35 35
43 Iran 11886 C 35 35
44 Iran 11887 A 35 35
45 Iran 11888 G 35 35
46 Iran 11889 T 35 35
47 Iran 11890 T 35 35
48 Iran 11891 T 35 35
49 Iran 11892 T 35 34
50 Iran 11893 G 35 34
51 Iran 11894 C 35 34
52 Iran 11895 A 35 34
53 Iran 11896 A 35 34
54 Iran 11897 C 35 34
55 Iran 11898 A 35 34
56 Iran 11899 A 35 34
57 Iran 11900 C 35 34
58 Iran 11901 T 35 34
59 Iran 11902 C 35 34
60 Iran 11903 A 35 34
61 Iran 11904 G 35 34
62 Iran 11905 A 35 34
63 Iran 11906 G 35 34
64 Iran 11907 T 35 34
65 Iran 11908 A 35 34
66 Iran 11909 G 35 34
67 Iran 11910 A 35 35
68 Iran 11911 A 35 35
69 Iran 11912 T 35 35
70 Iran 11913 C 35 35
71 Iran 11914 A 35 35
72 Iran 11915 T 35 35
73 Iran 11916 C 35 35
74 Iran 11917 A 35 35
75 Iran 11918 T 35 35
76 Iran 11919 C 35 35
77 Iran 11920 T 35 35
78 Iran 11921 A 35 35
79 Iran 11922 A 35 35
80 Iran 11923 A 35 35
81 Iran 11924 T 35 35
82 Iran 11925 T 35 35
83 Iran 11926 G 35 35
84 Iran 11927 T 35 35
85 Iran 11928 G 35 35
86 Iran 11929 G 35 35
87 Iran 11930 G 35 35
88 Iran 11931 C 35 35
89 Iran 11932 T 35 35
90 Iran 11933 C 35 35
91 Iran 11934 A 35 35
92 Iran 11935 A 35 35
93 Iran 11936 T 35 35
94 Iran 11937 G 35 35
95 Iran 11938 T 35 35
96 Iran 11939 G 35 35
97 Iran 11940 T 35 35
98 Iran 11941 C 35 35
99 Iran 11942 C 35 35
100 Iran 11943 A 35 35
101 Iran 11944 G 35 35
102 Iran 11945 T 35 35
103 Iran 11946 T 35 35
104 Iran 11947 A 35 35
105 Iran 11948 C 35 35
106 Iran 11949 A 35 35
107 Iran 11950 C 35 35
108 Iran 11951 A 35 35
109 Iran 11952 A 35 35
110 Iran 11953 T 35 35
111 Iran 11954 G 35 35
112 Iran 11955 A 35 35
113 Iran 11956 C 35 35
114 Iran 11957 A 35 35
115 Iran 11958 T 35 35
116 Iran 11959 T 35 35
117 Iran 11960 C 35 35
118 Iran 11961 T 35 35
119 Iran 11962 C 35 35
120 Iran 11963 T 35 35
121 Iran 11964 T 35 35
122 Iran 11965 A 35 35
123 Iran 11966 G 35 35
124 Iran 11967 C 35 35
125 Iran 11968 T 35 35
126 Iran 11969 A 35 35
127 Iran 11970 A 35 35
128 Iran 11971 A 35 35
129 Iran 11972 G 35 35
130 Iran 11973 A 35 35
131 Iran 11974 T 35 35
132 Iran 11975 A 35 35
133 Iran 11976 C 35 35
134 Iran 11977 T 35 35
135 Iran 11978 A 35 35
136 Iran 11979 C 35 35
137 Iran 11980 T 35 35
138 Iran 11981 G 35 35
139 Iran 11982 A 35 35
140 Iran 11983 A 35 35
141 Iran 11984 G 35 35
142 Iran 11985 C 35 35
143 Iran 11986 C 35 35
144 Iran 11987 T 35 35
145 Iran 11988 T 35 35
146 Iran 11989 T 35 35
147 Iran 11990 G 35 35
148 Iran 11991 A G 35 34 Glu3909Gly
149 Iran 11992 A 35 35
150 Iran 11993 A 35 35
151 Iran 11994 A 35 35
152 Iran 11995 A 35 35
153 Iran 11996 A 35 35
154 Iran 11997 T 35 35
155 Iran 11998 G 35 35
156 Iran 11999 G 35 35
157 Iran 12000 T 35 35
158 Iran 12001 T 35 35
159 Iran 12002 T 35 35
160 Iran 12003 C 35 35
161 Iran 12004 A 35 35
162 Iran 12005 C 35 35
163 Iran 12006 T 35 35
164 Iran 12007 A 35 35
165 Iran 12008 C 35 35
166 Iran 12009 T 35 35
167 Iran 12010 T 35 35
168 Iran 12011 T 35 35
169 Iran 12012 C 35 35
170 Iran 12013 T 35 35
171 Iran 12014 G 35 35
172 Iran 12015 T 35 35
173 Iran 12016 T 35 35
174 Iran 12017 T 35 35
175 Iran 12018 T 35 35
176 Iran 12019 G 35 35
177 Iran 12020 C 35 35
178 Iran 12021 T 35 35
179 Iran 12022 T 35 35
180 Iran 12023 T 35 35
181 Iran 12024 C 35 35
182 Iran 12025 C 35 35
183 Iran 12026 A 35 35
184 Iran 12027 T 35 35
185 Iran 12028 G 35 35
186 Iran 12029 C 35 35
187 Iran 12030 A 35 35
188 Iran 12031 G 35 35
189 Iran 12032 G 35 35
190 Iran 12033 G 35 35
191 Iran 12034 T 35 35
192 Iran 12035 G 35 35
193 Iran 12036 C 35 35
194 Iran 12037 T 35 35
195 Iran 12038 G 35 35
196 Iran 12039 T 35 35
197 Iran 12040 A 35 35
198 Iran 12041 G 35 35
199 Iran 12042 A 35 35
200 Iran 12043 C 35 35
201 Iran 12044 A 35 35
202 Iran 12045 T 35 35
203 Iran 12046 A 35 35
204 Iran 12047 A 35 35
205 Iran 12048 A 35 35
206 Iran 12049 C 35 35
207 Iran 12050 A 35 35
208 Iran 12051 A 35 35
209 Iran 12052 G 35 35
210 Iran 12053 C 35 35
211 Iran 12054 T 35 35
212 Iran 12055 T 35 35
213 Iran 12056 T 35 35
214 Iran 12057 G 35 35
215 Iran 12058 T 35 35
216 Iran 12059 G 35 35
217 Iran 12060 A 35 35
218 Iran 12061 A 35 35
219 Iran 12062 G 35 35
220 Iran 12063 A 35 35
221 Iran 12064 A 35 35
222 Iran 12065 A 35 35
223 Iran 12066 T 35 35
224 Iran 12067 G 35 35
225 Iran 12068 C 35 35
226 Iran 12069 T 35 35
227 Iran 12070 G 35 35
228 Iran 12071 G 35 35
229 Iran 12072 A 35 35
230 Iran 12073 C 35 35
231 Iran 12074 A 35 35
232 Iran 12075 A 35 35
233 Iran 12076 C 35 35
234 Iran 12077 A 35 35
235 Iran 12078 G 35 35
236 Iran 12079 G 35 35
237 Iran 12080 G 35 35
238 Iran 12081 C 35 35
239 Iran 12082 A 35 35
240 Iran 12083 A 35 35
241 Iran 12084 C 35 35
242 Iran 12085 C 35 35
243 Iran 12086 T 35 35
244 Iran 12087 T 35 35
245 Iran 12088 A 35 35
246 Iran 12089 C 35 35
247 Iran 12090 A 35 35
248 Iran 12091 A 35 35