National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N P Q R S T V W Y
*                                              
-     249                                        
?                                              
A     15 1                                      
C     9   1                                    
D     15     1                                 1
E 1   15       2   1                       1    
F     3                                        
G     3     1                       1          
H     3             1                          
I     6                                        
K     18                 1     1                
L     45         3         4 1     1         1  
M     12               1                        
N     9                       2       1        
P                                              
Q     18             1             1            
R     6                                        
S     30         1         2     1     3 1      
T     12                                 1      
V     27         1     1                   1    
W     3                                        
Y                                              

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 India 11843 T 4707 4707
1 India 11844 C 4708 4708
2 India 11845 T 4710 4710
3 India 11846 A 4711 4710
4 India 11847 A 4712 4712
5 India 11848 A 4712 4712
6 India 11849 A 4712 4711
7 India 11850 T 4712 4712
8 India 11851 G 4712 4712
9 India 11852 T 4712 4705
10 India 11853 C 4713 4711
11 India 11854 A 4714 4714
12 India 11855 G T 4715 4714 Asp3864Tyr
13 India 11856 A 4715 4715
14 India 11857 T 4715 4715
15 India 11858 G 4716 4713
16 India 11859 T 4717 4702
17 India 11860 A 4718 4711
18 India 11861 A 4719 4718
19 India 11862 A 4720 4717
20 India 11863 G 4725 4719
21 India 11864 T 4746 4745
22 India 11865 G 4747 4745
23 India 11866 C T 4747 4744 Cys3867Cys
24 India 11867 A 4747 4745
25 India 11868 C 4748 4746
26 India 11869 A 4748 4747
27 India 11870 T 4751 4751
28 India 11871 C 4751 4751
29 India 11872 A 4751 4751
30 India 11873 G 4751 4751
31 India 11874 T 4751 4751
32 India 11875 A 4751 4750
33 India 11876 G 4766 4765
34 India 11877 T 4766 4766
35 India 11878 C 4766 4763
36 India 11879 T 4766 4766
37 India 11880 T 4766 4766
38 India 11881 A 4766 4766
39 India 11882 C 4766 4766
40 India 11883 T 4766 4766
41 India 11884 C 4766 4764
42 India 11885 T 4766 4766
43 India 11886 C 4766 4765
44 India 11887 A C 4766 4764 Ser3874Ser
45 India 11888 G 4766 4766
46 India 11889 T 4766 4766
47 India 11890 T 4766 4766
48 India 11891 T 4766 4766
49 India 11892 T G 4766 4765 Leu3876Trp
50 India 11893 G 4766 4766
51 India 11894 C 4766 4764
52 India 11895 A 4766 4766
53 India 11896 A 4766 4765
54 India 11897 C 4766 4766
55 India 11898 A 4766 4766
56 India 11899 A 4766 4766
57 India 11900 C 4766 4766
58 India 11901 T 4766 4766
59 India 11902 C 4766 4765
60 India 11903 A 4766 4766
61 India 11904 G 4766 4766
62 India 11905 A 4766 4766
63 India 11906 G 4766 4765
64 India 11907 T 4766 4766
65 India 11908 A 4766 4766
66 India 11909 G T 4766 4765 Glu3882*
67 India 11910 A 4766 4764
68 India 11911 A G 4766 4763 Glu3882Glu
69 India 11912 T 4766 4764
70 India 11913 C 4766 4762
71 India 11914 A 4766 4764
72 India 11915 T A 4766 4763 Ser3884Thr
73 India 11916 C T 4766 4757 Ser3884Leu
74 India 11917 A 4766 4764
75 India 11918 T 4766 4764
76 India 11919 C T 4766 4762 Ser3885Phe
77 India 11920 T 4766 4764
78 India 11921 A 4766 4764
79 India 11922 A 4766 4764
80 India 11923 A 4766 4762
81 India 11924 T 4766 4762
82 India 11925 T 4766 4761
83 India 11926 G 4766 4762
84 India 11927 T 4766 4762
85 India 11928 G 4766 4762
86 India 11929 G 4766 4762
87 India 11930 G 4765 4760
88 India 11931 C 4765 4761
89 India 11932 T 4765 4761
90 India 11933 C 4765 4761
91 India 11934 A 4765 4761
92 India 11935 A 4765 4761
93 India 11936 T 4765 4761
94 India 11937 G 4765 4762
95 India 11938 T 4765 4762
96 India 11939 G A 4765 4757 Val3892Ile
97 India 11940 T 4765 4761
98 India 11941 C T 4765 4761 Val3892Val
99 India 11942 C 4765 4762
100 India 11943 A 4765 4762
101 India 11944 G T 4765 4761 Gln3893His
102 India 11945 T 4765 4763
103 India 11946 T 4765 4764
104 India 11947 A G 4765 4760 Leu3894Leu
105 India 11948 C 4765 4765
106 India 11949 A 4765 4765
107 India 11950 C T 4765 4762 His3895His
108 India 11951 A 4765 4765
109 India 11952 A 4765 4765
110 India 11953 T 4765 4765
111 India 11954 G 4765 4765
112 India 11955 A 4765 4765
113 India 11956 C 4765 4764
114 India 11957 A 4765 4765
115 India 11958 T 4765 4765
116 India 11959 T 4765 4765
117 India 11960 C 4765 4765
118 India 11961 T 4765 4765
119 India 11962 C T 4765 4762 Leu3899Leu
120 India 11963 T 4765 4765
121 India 11964 T 4765 4765
122 India 11965 A 4765 4765
123 India 11966 G 4765 4765
124 India 11967 C 4765 4764
125 India 11968 T 4765 4765
126 India 11969 A 4765 4764
127 India 11970 A 4765 4765
128 India 11971 A 4765 4765
129 India 11972 G 4765 4765
130 India 11973 A 4765 4765
131 India 11974 T 4765 4765
132 India 11975 A 4765 4765
133 India 11976 C 4765 4765
134 India 11977 T 4765 4765
135 India 11978 A 4765 4765
136 India 11979 C 4765 4765
137 India 11980 T 4765 4764
138 India 11981 G 4765 4764
139 India 11982 A 4765 4764
140 India 11983 A 4765 4761
141 India 11984 G 4765 4764
142 India 11985 C 4765 4764
143 India 11986 C A 4765 4761 Ala3907Ala
144 India 11987 T 4766 4765
145 India 11988 T 4766 4765
146 India 11989 T 4766 4765
147 India 11990 G 4766 4765
148 India 11991 A G 4766 4762 Glu3909Gly
149 India 11992 A 4766 4765
150 India 11993 A 4766 4765
151 India 11994 A 4766 4765
152 India 11995 A G 4766 4764 Lys3910Lys
153 India 11996 A 4766 4765
154 India 11997 T 4766 4765
155 India 11998 G 4766 4765
156 India 11999 G 4766 4765
157 India 12000 T 4766 4764
158 India 12001 T 4766 4764
159 India 12002 T C 4766 4762 Ser3913Pro
160 India 12003 C T 4766 4750 Ser3913Leu
161 India 12004 A G 4766 4761 Ser3913Ser
162 India 12005 C 4766 4761
163 India 12006 T 4766 4761
164 India 12007 A 4766 4761
165 India 12008 C T 4766 4758 Leu3915Phe
166 India 12009 T 4766 4761
167 India 12010 T 4766 4761
168 India 12011 T 4766 4761
169 India 12012 C 4766 4761
170 India 12013 T 4766 4760
171 India 12014 G T 4766 4759 Val3917Phe
172 India 12015 T 4766 4760
173 India 12016 T 4766 4760
174 India 12017 T 4766 4760
175 India 12018 T 4766 4760
176 India 12019 G 4766 4759
177 India 12020 C T 4766 4755 Leu3919Phe
178 India 12021 T 4766 4759
179 India 12022 T 4766 4758
180 India 12023 T 4766 4760
181 India 12024 C 4766 4759
182 India 12025 C T 4766 4758 Ser3920Ser
183 India 12026 A 4766 4760
184 India 12027 T 4766 4760
185 India 12028 G 4766 4760
186 India 12029 C 4766 4760
187 India 12030 A 4766 4760
188 India 12031 G A 4766 4758 Gln3922Gln
189 India 12032 G C 4766 4759 Gly3923Arg
190 India 12033 G A 4766 4760 Gly3923Asp
191 India 12034 T 4766 4762
192 India 12035 G 4766 4763
193 India 12036 C 4766 4763
194 India 12037 T 4766 4764
195 India 12038 G 4766 4764
196 India 12039 T 4766 4764
197 India 12040 A 4766 4765
198 India 12041 G 4766 4765
199 India 12042 A 4766 4765
200 India 12043 C T 4766 4764 Asp3926Asp
201 India 12044 A 4766 4765
202 India 12045 T 4766 4765
203 India 12046 A 4766 4766
204 India 12047 A 4766 4766
205 India 12048 A 4766 4766
206 India 12049 C T 4766 4764 Asn3928Asn
207 India 12050 A 4766 4766
208 India 12051 A 4766 4766
209 India 12052 G T 4766 4765 Lys3929Asn
210 India 12053 C T 4766 4761 Leu3930Phe
211 India 12054 T 4766 4766
212 India 12055 T 4766 4766
213 India 12056 T 4766 4766
214 India 12057 G 4766 4766
215 India 12058 T 4766 4766
216 India 12059 G 4766 4766
217 India 12060 A 4766 4766
218 India 12061 A 4766 4766
219 India 12062 G 4766 4765
220 India 12063 A T 4766 4765 Glu3933Val
221 India 12064 A G 4766 4765 Glu3933Glu
222 India 12065 A 4766 4766
223 India 12066 T 4766 4766
224 India 12067 G T 4766 4763 Met3934Ile
225 India 12068 C A,T 4766 4754 Leu3935Met-p.Leu3935Leu
226 India 12069 T A 4766 4765 Leu3935Gln
227 India 12070 G T 4766 4764 Leu3935Leu
228 India 12071 G 4766 4766
229 India 12072 A 4766 4766
230 India 12073 C 4766 4766
231 India 12074 A 4766 4766
232 India 12075 A G 4766 4763 Asn3937Ser
233 India 12076 C T 4766 4745 Asn3937Asn
234 India 12077 A 4766 4766
235 India 12078 G 4766 4766
236 India 12079 G 4766 4764
237 India 12080 G 4766 4766
238 India 12081 C 4766 4765
239 India 12082 A 4766 4766
240 India 12083 A 4766 4766
241 India 12084 C 4766 4766
242 India 12085 C T 4766 4764 Thr3940Thr
243 India 12086 T 4766 4766
244 India 12087 T 4766 4766
245 India 12088 A 4766 4766
246 India 12089 C 4766 4766
247 India 12090 A 4766 4766
248 India 12091 A 4766 4766