National Institute Of Genetic Engineering and Biotechnology

P.I:Mohammad-Ali Malboobi
Here we provide last mutation observed in Nucleocapsid gene of COVID-19 prevalent in Iran.
We kindly wait your comment or coopration in tracking crona virus project.

Amino acid changes

How to read this table:
- Rows are reference amino acids and columns are changed amino acids. E.g. Row 'A' column 'E' indicates how many 'A' amino acids have been replaced by 'E' amino acids.
- Red background colors indicate that more changes happened (heat-map).
- Diagonals are indicated using grey background color
- WARNING: This table may include different translation codon tables (e.g. mamalian DNA and mitochondrial DNA).

  * - ? A C D E F G H I K L M N Q R S T V W
*                                          
-     249                                    
?                                          
A     15                                 1  
C     9   1                                
D     15     3                              
E     15                                    
F     3                                    
G     3                                    
H     3                                    
I     6               1                    
K     18                         1          
L     45         1         3             1  
M     12               3                    
N     9                       1            
Q     18                                    
R     6                                    
S 1   30         1                   1      
T     12               1               1    
V     27           1   1                 1  
W     3                                    

Nucleotide and amino acid mutations

Here we provide list of mutation observed in Nucleocapsid at gene and protein of COVID-19.
-The position column is nucleotide position in reference genome as NC_045512.2
-The Reference column indicate reference nucleotide in NC_045512.2
-The NS column indicate number of samples that this position have been observed
-The NSR column indicate number of samples with reference nucleotide. Therefore diffrenciate related to Ns indicate number of sample with mutated nucleotide

Contoury Position Reference Alt. NSR NS AAchange
0 Iceland 11843 T 4116 4116
1 Iceland 11844 C 4116 4116
2 Iceland 11845 T 4116 4116
3 Iceland 11846 A 4116 4116
4 Iceland 11847 A 4116 4116
5 Iceland 11848 A 4116 4116
6 Iceland 11849 A 4116 4116
7 Iceland 11850 T 4116 4116
8 Iceland 11851 G T 4116 4115 Met3862Ile
9 Iceland 11852 T 4116 4116
10 Iceland 11853 C 4116 4116
11 Iceland 11854 A 4116 4116
12 Iceland 11855 G 4116 4116
13 Iceland 11856 A 4116 4116
14 Iceland 11857 T C 4116 4115 Asp3864Asp
15 Iceland 11858 G 4117 4115
16 Iceland 11859 T 4117 4116
17 Iceland 11860 A 4117 4116
18 Iceland 11861 A C 4117 4115 Lys3866Gln
19 Iceland 11862 A 4117 4116
20 Iceland 11863 G 4117 4115
21 Iceland 11864 T 4147 4147
22 Iceland 11865 G 4147 4147
23 Iceland 11866 C T 4147 4145 Cys3867Cys
24 Iceland 11867 A 4147 4147
25 Iceland 11868 C 4147 4147
26 Iceland 11869 A 4147 4147
27 Iceland 11870 T 4147 4147
28 Iceland 11871 C 4147 4147
29 Iceland 11872 A 4147 4146
30 Iceland 11873 G 4147 4147
31 Iceland 11874 T 4147 4146
32 Iceland 11875 A 4147 4147
33 Iceland 11876 G 4147 4147
34 Iceland 11877 T 4147 4147
35 Iceland 11878 C 4147 4147
36 Iceland 11879 T 4147 4147
37 Iceland 11880 T 4147 4147
38 Iceland 11881 A 4147 4147
39 Iceland 11882 C 4147 4147
40 Iceland 11883 T 4147 4147
41 Iceland 11884 C 4147 4147
42 Iceland 11885 T 4147 4147
43 Iceland 11886 C A 4147 4146 Ser3874*
44 Iceland 11887 A 4147 4147
45 Iceland 11888 G 4147 4147
46 Iceland 11889 T 4147 4147
47 Iceland 11890 T 4163 4163
48 Iceland 11891 T 4163 4163
49 Iceland 11892 T 4163 4163
50 Iceland 11893 G 4163 4163
51 Iceland 11894 C 4163 4163
52 Iceland 11895 A 4163 4163
53 Iceland 11896 A 4163 4163
54 Iceland 11897 C 4163 4163
55 Iceland 11898 A 4163 4163
56 Iceland 11899 A 4163 4163
57 Iceland 11900 C 4163 4163
58 Iceland 11901 T 4163 4163
59 Iceland 11902 C 4163 4163
60 Iceland 11903 A 4163 4163
61 Iceland 11904 G 4163 4163
62 Iceland 11905 A 4163 4163
63 Iceland 11906 G 4163 4163
64 Iceland 11907 T 4163 4163
65 Iceland 11908 A 4163 4163
66 Iceland 11909 G 4163 4163
67 Iceland 11910 A 4163 4163
68 Iceland 11911 A 4163 4163
69 Iceland 11912 T 4163 4163
70 Iceland 11913 C 4163 4163
71 Iceland 11914 A 4163 4163
72 Iceland 11915 T 4163 4163
73 Iceland 11916 C 4163 4163
74 Iceland 11917 A 4163 4163
75 Iceland 11918 T 4163 4162
76 Iceland 11919 C T 4163 4162 Ser3885Phe
77 Iceland 11920 T 4163 4163
78 Iceland 11921 A 4163 4163
79 Iceland 11922 A 4163 4163
80 Iceland 11923 A 4163 4163
81 Iceland 11924 T 4163 4163
82 Iceland 11925 T 4163 4163
83 Iceland 11926 G 4163 4163
84 Iceland 11927 T 4163 4163
85 Iceland 11928 G 4160 4160
86 Iceland 11929 G 4160 4160
87 Iceland 11930 G 4160 4160
88 Iceland 11931 C 4160 4160
89 Iceland 11932 T 4160 4160
90 Iceland 11933 C 4160 4160
91 Iceland 11934 A 4160 4160
92 Iceland 11935 A 4160 4160
93 Iceland 11936 T 4160 4160
94 Iceland 11937 G 4160 4160
95 Iceland 11938 T 4160 4160
96 Iceland 11939 G A 4160 4159 Val3892Ile
97 Iceland 11940 T 4160 4160
98 Iceland 11941 C T 4160 4159 Val3892Val
99 Iceland 11942 C 4160 4160
100 Iceland 11943 A 4160 4160
101 Iceland 11944 G 4160 4160
102 Iceland 11945 T 4160 4160
103 Iceland 11946 T 4160 4160
104 Iceland 11947 A 4160 4160
105 Iceland 11948 C 4160 4160
106 Iceland 11949 A 4160 4160
107 Iceland 11950 C 4155 4153
108 Iceland 11951 A 4155 4153
109 Iceland 11952 A 4155 4153
110 Iceland 11953 T C 4155 4153 Asn3896Asn
111 Iceland 11954 G 4155 4154
112 Iceland 11955 A 4155 4153
113 Iceland 11956 C 4155 4154
114 Iceland 11957 A 4155 4155
115 Iceland 11958 T 4155 4155
116 Iceland 11959 T C 4155 4154 Ile3898Ile
117 Iceland 11960 C 4155 4154
118 Iceland 11961 T 4155 4155
119 Iceland 11962 C T 4155 4154 Leu3899Leu
120 Iceland 11963 T 4155 4155
121 Iceland 11964 T 4155 4155
122 Iceland 11965 A 4155 4155
123 Iceland 11966 G 4155 4154
124 Iceland 11967 C 4155 4154
125 Iceland 11968 T 4155 4155
126 Iceland 11969 A 4155 4155
127 Iceland 11970 A 4155 4155
128 Iceland 11971 A 4155 4155
129 Iceland 11972 G 4155 4155
130 Iceland 11973 A 4155 4155
131 Iceland 11974 T C 4155 4154 Asp3903Asp
132 Iceland 11975 A 4155 4155
133 Iceland 11976 C 4155 4155
134 Iceland 11977 T 4155 4155
135 Iceland 11978 A 4155 4155
136 Iceland 11979 C T 4155 4154 Thr3905Ile
137 Iceland 11980 T 4155 4155
138 Iceland 11981 G 4155 4155
139 Iceland 11982 A 4155 4155
140 Iceland 11983 A 4155 4155
141 Iceland 11984 G 4155 4155
142 Iceland 11985 C 4155 4155
143 Iceland 11986 C 4155 4155
144 Iceland 11987 T 4155 4155
145 Iceland 11988 T 4155 4155
146 Iceland 11989 T 4155 4155
147 Iceland 11990 G 4155 4155
148 Iceland 11991 A 4155 4155
149 Iceland 11992 A 4155 4155
150 Iceland 11993 A 4155 4155
151 Iceland 11994 A 4155 4155
152 Iceland 11995 A 4155 4155
153 Iceland 11996 A 4155 4155
154 Iceland 11997 T 4155 4155
155 Iceland 11998 G T 4155 4153 Met3911Ile
156 Iceland 11999 G 4155 4154
157 Iceland 12000 T 4155 4155
158 Iceland 12001 T 4155 4155
159 Iceland 12002 T 4155 4155
160 Iceland 12003 C 4155 4155
161 Iceland 12004 A 4155 4155
162 Iceland 12005 C 4155 4155
163 Iceland 12006 T 4155 4155
164 Iceland 12007 A 4155 4155
165 Iceland 12008 C T 4155 4154 Leu3915Phe
166 Iceland 12009 T 4155 4155
167 Iceland 12010 T 4155 4155
168 Iceland 12011 T 4155 4155
169 Iceland 12012 C 4154 4151
170 Iceland 12013 T 4154 4151
171 Iceland 12014 G 4154 4151
172 Iceland 12015 T G 4154 4149 Val3917Gly
173 Iceland 12016 T 4154 4152
174 Iceland 12017 T 4154 4153
175 Iceland 12018 T 4154 4152
176 Iceland 12019 G 4154 4153
177 Iceland 12020 C 4154 4152
178 Iceland 12021 T 4154 4153
179 Iceland 12022 T 4154 4152
180 Iceland 12023 T 4154 4152
181 Iceland 12024 C 4154 4153
182 Iceland 12025 C T 4154 4147 Ser3920Ser
183 Iceland 12026 A 4154 4153
184 Iceland 12027 T 4154 4152
185 Iceland 12028 G 4154 4152
186 Iceland 12029 C 4154 4153
187 Iceland 12030 A 4154 4152
188 Iceland 12031 G 4154 4152
189 Iceland 12032 G 4154 4153
190 Iceland 12033 G 4154 4153
191 Iceland 12034 T 4154 4152
192 Iceland 12035 G 4154 4153
193 Iceland 12036 C 4154 4153
194 Iceland 12037 T 4153 4152
195 Iceland 12038 G 4153 4153
196 Iceland 12039 T 4153 4153
197 Iceland 12040 A 4153 4153
198 Iceland 12041 G 4153 4153
199 Iceland 12042 A 4153 4153
200 Iceland 12043 C T 4153 4152 Asp3926Asp
201 Iceland 12044 A 4153 4153
202 Iceland 12045 T 4153 4153
203 Iceland 12046 A 4153 4153
204 Iceland 12047 A 4153 4153
205 Iceland 12048 A 4153 4153
206 Iceland 12049 C 4153 4153
207 Iceland 12050 A 4153 4153
208 Iceland 12051 A 4153 4153
209 Iceland 12052 G 4153 4153
210 Iceland 12053 C 4153 4152
211 Iceland 12054 T 4153 4153
212 Iceland 12055 T 4153 4153
213 Iceland 12056 T 4153 4153
214 Iceland 12057 G 4153 4153
215 Iceland 12058 T 4154 4154
216 Iceland 12059 G 4154 4154
217 Iceland 12060 A 4154 4154
218 Iceland 12061 A 4154 4154
219 Iceland 12062 G 4154 4153
220 Iceland 12063 A 4154 4154
221 Iceland 12064 A 4154 4154
222 Iceland 12065 A 4154 4154
223 Iceland 12066 T 4154 4154
224 Iceland 12067 G T 4154 4151 Met3934Ile
225 Iceland 12068 C T,G 4154 4151 Leu3935Val-p.Leu3935Leu
226 Iceland 12069 T 4153 4153
227 Iceland 12070 G T 4153 4150 Leu3935Leu
228 Iceland 12071 G 4153 4153
229 Iceland 12072 A 4153 4153
230 Iceland 12073 C 4153 4153
231 Iceland 12074 A 4153 4153
232 Iceland 12075 A 4153 4153
233 Iceland 12076 C 4153 4153
234 Iceland 12077 A 4152 4152
235 Iceland 12078 G 4152 4152
236 Iceland 12079 G 4152 4152
237 Iceland 12080 G 4152 4152
238 Iceland 12081 C T 4152 4151 Ala3939Val
239 Iceland 12082 A 4152 4152
240 Iceland 12083 A 4152 4152
241 Iceland 12084 C 4152 4152
242 Iceland 12085 C T 4152 4137 Thr3940Thr
243 Iceland 12086 T 4152 4152
244 Iceland 12087 T 4152 4152
245 Iceland 12088 A 4152 4152
246 Iceland 12089 C 4152 4152
247 Iceland 12090 A 4152 4152
248 Iceland 12091 A 4152 4152